Wall clock time and date at job start Tue Mar 31 2020 14:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 115.56220 * 2 1 4 4 C 1.53079 * 117.50995 * 214.30512 * 2 1 3 5 5 C 1.53000 * 117.50349 * 145.69593 * 2 1 3 6 6 C 1.50693 * 117.50399 * 215.00264 * 5 2 1 7 7 O 1.20828 * 119.99642 * 0.07747 * 6 5 2 8 8 O 1.34224 * 120.00486 * 180.08924 * 6 5 2 9 9 C 1.50703 * 117.49508 * 359.97438 * 5 2 1 10 10 O 1.21279 * 120.00116 * 359.91301 * 9 5 2 11 11 N 1.34775 * 120.00110 * 179.91108 * 9 5 2 12 12 C 1.46500 * 120.00432 * 179.97438 * 11 9 5 13 13 C 1.53001 * 109.47336 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.49831 * 54.93507 * 13 12 11 15 15 C 1.53034 * 109.49597 * 175.00196 * 13 12 11 16 16 C 1.53046 * 109.53856 * 181.31769 * 15 13 12 17 17 C 1.53188 * 109.30760 * 298.63191 * 16 15 13 18 18 N 1.46920 * 108.77580 * 54.63833 * 17 16 15 19 19 C 1.36939 * 120.63582 * 126.36663 * 18 17 16 20 20 H 1.07993 * 120.00338 * 209.20987 * 19 18 17 21 21 C 1.38813 * 119.99951 * 29.20476 * 19 18 17 22 22 N 1.31629 * 119.99850 * 24.22959 * 21 19 18 23 23 Si 1.86795 * 120.00361 * 204.23281 * 21 19 18 24 24 H 1.48500 * 109.47463 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.46959 * 299.99858 * 23 21 19 26 26 H 1.48498 * 109.47181 * 59.99934 * 23 21 19 27 27 C 1.46931 * 118.73802 * 306.63465 * 18 17 16 28 28 H 1.09006 * 109.46739 * 274.30473 * 1 2 3 29 29 H 1.08993 * 109.47347 * 34.30602 * 1 2 3 30 30 H 1.08999 * 109.47089 * 154.31039 * 1 2 3 31 31 H 1.09004 * 109.47332 * 205.69140 * 3 2 1 32 32 H 1.09000 * 109.47491 * 325.69632 * 3 2 1 33 33 H 1.09006 * 109.46647 * 85.69480 * 3 2 1 34 34 H 1.09001 * 117.49458 * 145.03803 * 4 2 1 35 35 H 1.08993 * 117.51607 * 359.97438 * 4 2 1 36 36 H 0.96703 * 117.00220 * 180.02562 * 8 6 5 37 37 H 0.97000 * 120.00236 * 0.02562 * 11 9 5 38 38 H 1.09004 * 109.46812 * 59.99969 * 12 11 9 39 39 H 1.09001 * 109.47002 * 300.00769 * 12 11 9 40 40 H 1.08999 * 109.46845 * 61.29266 * 15 13 12 41 41 H 1.09005 * 109.46134 * 301.33261 * 15 13 12 42 42 H 1.09004 * 109.49599 * 178.68183 * 16 15 13 43 43 H 1.08998 * 109.52068 * 58.60136 * 16 15 13 44 44 H 1.08993 * 109.59025 * 294.84561 * 17 16 15 45 45 H 1.09001 * 109.58413 * 174.42141 * 17 16 15 46 46 H 0.97003 * 119.99345 * 5.77448 * 22 21 19 47 47 H 1.09003 * 109.58722 * 173.14742 * 27 18 17 48 48 H 1.08991 * 109.58659 * 293.57504 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2371 -1.1215 -0.7652 5 6 2.2366 -1.1210 0.7648 6 6 3.5291 -0.7812 1.4611 7 8 3.9689 0.3427 1.4034 8 8 4.1918 -1.7269 2.1452 9 6 1.3721 -2.1404 1.4610 10 8 0.1640 -2.0520 1.4032 11 7 1.9417 -3.1505 2.1480 12 6 1.1014 -4.1412 2.8253 13 6 1.9905 -5.1708 3.5255 14 1 2.6838 -4.6588 4.1930 15 6 1.1180 -6.1325 4.3353 16 6 2.0085 -7.1427 5.0624 17 6 2.7972 -7.9566 4.0318 18 7 3.5267 -7.0301 3.1555 19 6 4.8779 -7.1590 2.9742 20 1 5.4789 -6.2887 2.7557 21 6 5.4752 -8.4083 3.0715 22 7 4.7643 -9.4958 2.8607 23 14 7.2877 -8.5461 3.5016 24 1 7.6792 -9.9779 3.5433 25 1 8.0953 -7.8414 2.4737 26 1 7.5296 -7.9285 4.8302 27 6 2.7799 -5.9590 2.4819 28 1 -0.3633 0.0771 1.0248 29 1 -0.3634 0.8488 -0.5792 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1824 1.3084 -0.4455 32 1 1.5812 2.0743 -0.5792 33 1 2.2773 1.7412 1.0248 34 1 3.1723 -0.8756 -1.2681 35 1 1.6123 -1.8595 -1.2682 36 1 5.0161 -1.4612 2.5754 37 1 2.9080 -3.2211 2.1946 38 1 0.4703 -4.6440 2.0925 39 1 0.4739 -3.6416 3.5633 40 1 0.4414 -6.6618 3.6642 41 1 0.5373 -5.5687 5.0655 42 1 1.3878 -7.8127 5.6574 43 1 2.7019 -6.6130 5.7156 44 1 2.1094 -8.5574 3.4368 45 1 3.5047 -8.6081 4.5447 46 1 3.8462 -9.4236 2.5560 47 1 3.4761 -5.2927 1.9725 48 1 2.0907 -6.3935 1.7580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603321783.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:09 Heat of formation + Delta-G solvation = -91.112694 kcal Electronic energy + Delta-G solvation = -28978.341388 eV Core-core repulsion = 25034.277284 eV Total energy + Delta-G solvation = -3944.064104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46691 -39.56929 -38.36438 -37.46549 -36.13887 -34.94082 -33.21613 -30.92239 -30.34946 -29.76136 -27.62814 -26.40666 -25.11159 -24.92908 -22.63307 -22.08743 -21.05006 -20.59931 -19.48468 -19.07478 -18.59897 -17.50472 -17.27125 -16.14159 -15.83951 -15.42412 -15.21807 -14.50616 -14.45032 -14.27290 -14.15253 -13.87118 -13.71995 -13.57086 -13.37103 -13.28547 -13.07987 -12.51354 -12.37784 -12.22932 -12.14889 -12.11166 -11.79882 -11.54879 -11.49435 -11.06010 -10.95043 -10.70997 -10.64094 -10.41930 -10.29433 -10.15103 -10.08203 -9.97061 -9.89445 -9.56603 -9.27473 -8.96573 -8.39647 -6.89835 -6.08713 -3.27262 1.66699 2.30296 2.65137 3.09108 3.31245 3.46377 3.49810 3.67885 4.08853 4.29037 4.52245 4.55853 4.67462 4.81311 5.00083 5.22565 5.26642 5.29485 5.35393 5.37085 5.47462 5.50308 5.59481 5.70348 5.70634 5.75434 5.83563 5.83804 5.87522 6.01310 6.09498 6.18788 6.21297 6.23294 6.29737 6.43948 6.46053 6.53425 6.66084 6.68172 6.80325 7.08103 7.18879 7.50976 7.61581 7.97380 8.20215 8.55644 9.09588 9.82052 10.27659 11.19324 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.003375 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.146794 B = 8294.262504 C = 9414.140413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.053 4.053 3 C -0.110 4.110 4 C -0.118 4.118 5 C -0.180 4.180 6 C 0.521 3.479 7 O -0.500 6.500 8 O -0.511 6.511 9 C 0.551 3.449 10 O -0.533 6.533 11 N -0.710 5.710 12 C 0.127 3.873 13 C -0.117 4.117 14 H 0.074 0.926 15 C -0.100 4.100 16 C -0.136 4.136 17 C 0.149 3.851 18 N -0.598 5.598 19 C -0.351 4.351 20 H 0.055 0.945 21 C -0.023 4.023 22 N -0.915 5.915 23 Si 1.064 2.936 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.156 3.844 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.420 0.580 37 H 0.412 0.588 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.016 0.984 45 H 0.077 0.923 46 H 0.269 0.731 47 H 0.053 0.947 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 17.586 -3.360 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.054 4.054 3 C -0.167 4.167 4 C -0.156 4.156 5 C -0.184 4.184 6 C 0.363 3.637 7 O -0.388 6.388 8 O -0.324 6.324 9 C 0.336 3.664 10 O -0.411 6.411 11 N -0.365 5.365 12 C 0.003 3.997 13 C -0.138 4.138 14 H 0.092 0.908 15 C -0.138 4.138 16 C -0.176 4.176 17 C 0.023 3.977 18 N -0.321 5.321 19 C -0.480 4.480 20 H 0.072 0.928 21 C -0.225 4.225 22 N -0.555 5.555 23 Si 0.894 3.106 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.030 3.970 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.281 0.719 37 H 0.252 0.748 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.001 16.717 -3.263 18.059 hybrid contribution -0.044 1.096 0.137 1.106 sum -6.045 17.814 -3.125 19.069 Atomic orbital electron populations 1.21436 0.89489 1.02080 1.03228 1.21855 0.96331 0.90605 0.96579 1.21489 0.99838 0.92316 1.03019 1.23458 1.03737 1.01693 0.86670 1.21327 0.94489 1.05455 0.97153 1.21812 0.83952 0.82331 0.75615 1.90732 1.67491 1.21922 1.58640 1.84304 1.40647 1.43824 1.63671 1.18899 0.87520 0.81099 0.78932 1.90706 1.13643 1.75055 1.61652 1.46276 1.12023 1.26461 1.51774 1.21485 0.93244 0.88924 0.96037 1.21853 0.97430 0.95512 0.98969 0.90783 1.21342 0.97278 0.96909 0.98267 1.22055 0.98339 0.98200 0.98957 1.20961 0.94220 0.91861 0.90640 1.44075 1.05000 1.32982 1.50075 1.19937 0.82556 0.94580 1.50893 0.92769 1.25857 1.05831 0.91785 0.99071 1.70781 1.11872 1.29532 1.43311 0.83537 0.75057 0.75757 0.76249 1.21092 1.22004 1.22076 1.20803 0.93659 0.90660 0.91898 0.90919 0.92404 0.91115 0.91496 0.92005 0.91160 0.86893 0.86424 0.71877 0.74753 0.91473 0.91860 0.92436 0.93139 0.92947 0.92394 0.96565 0.90446 0.91985 0.92886 0.96633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 8.09 37.16 0.30 -0.78 16 2 C -0.05 -0.54 2.70 -154.47 -0.42 -0.96 16 3 C -0.11 -1.03 8.09 37.16 0.30 -0.73 16 4 C -0.12 -1.13 9.23 -26.69 -0.25 -1.37 16 5 C -0.18 -2.09 2.56 -156.81 -0.40 -2.50 16 6 C 0.52 5.97 7.84 36.00 0.28 6.25 16 7 O -0.50 -6.34 13.87 -18.75 -0.26 -6.60 16 8 O -0.51 -5.03 10.51 -39.24 -0.41 -5.44 16 9 C 0.55 7.65 7.36 -10.98 -0.08 7.57 16 10 O -0.53 -8.40 13.10 5.56 0.07 -8.33 16 11 N -0.71 -9.85 5.14 -60.29 -0.31 -10.16 16 12 C 0.13 1.84 5.07 -4.04 -0.02 1.82 16 13 C -0.12 -1.91 2.36 -90.72 -0.21 -2.12 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 16 C -0.14 -2.48 6.08 -26.61 -0.16 -2.64 16 17 C 0.15 3.40 4.70 -3.72 -0.02 3.38 16 18 N -0.60 -14.46 2.84 -172.59 -0.49 -14.95 16 19 C -0.35 -9.48 9.48 -15.06 -0.14 -9.63 16 20 H 0.05 1.46 7.94 -52.49 -0.42 1.04 16 21 C -0.02 -0.64 4.69 -17.43 -0.08 -0.72 16 22 N -0.92 -26.99 12.45 55.49 0.69 -26.30 16 23 Si 1.06 24.65 29.98 -169.99 -5.10 19.56 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.16 3.13 5.58 -3.93 -0.02 3.11 16 28 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 29 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 30 H 0.07 0.79 7.02 -51.93 -0.36 0.42 16 31 H 0.07 0.65 7.02 -51.93 -0.36 0.28 16 32 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 33 H 0.07 0.75 7.26 -51.93 -0.38 0.37 16 34 H 0.11 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.12 1.06 8.05 -51.93 -0.42 0.64 16 36 H 0.42 2.40 9.10 45.56 0.41 2.82 16 37 H 0.41 5.60 4.86 -40.82 -0.20 5.40 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.02 0.38 7.85 -51.93 -0.41 -0.03 16 45 H 0.08 1.99 6.39 -51.93 -0.33 1.66 16 46 H 0.27 8.02 6.71 -40.82 -0.27 7.74 16 47 H 0.05 1.05 7.13 -51.93 -0.37 0.68 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -32.32 373.86 -8.14 -40.45 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.90 Total: 7.19 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.06 Total: -1.05 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.11 Total: -51.42 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.60 Total: -20.37 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.10 Total: 19.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.32 -8.14 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603321783.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.661 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds