Wall clock time and date at job start Tue Mar 31 2020 14:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 115.56220 * 2 1 4 4 C 1.53079 * 117.50995 * 214.30512 * 2 1 3 5 5 C 1.53000 * 117.50349 * 145.69593 * 2 1 3 6 6 C 1.50693 * 117.50399 * 215.00264 * 5 2 1 7 7 O 1.20828 * 119.99642 * 0.07747 * 6 5 2 8 8 O 1.34224 * 120.00486 * 180.08924 * 6 5 2 9 9 C 1.50703 * 117.49508 * 359.97438 * 5 2 1 10 10 O 1.21279 * 120.00116 * 359.91301 * 9 5 2 11 11 N 1.34775 * 120.00110 * 179.91108 * 9 5 2 12 12 C 1.46500 * 120.00432 * 179.97438 * 11 9 5 13 13 C 1.53001 * 109.47336 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.49831 * 54.93507 * 13 12 11 15 15 C 1.53034 * 109.49597 * 175.00196 * 13 12 11 16 16 C 1.53046 * 109.53856 * 181.31769 * 15 13 12 17 17 C 1.53188 * 109.30760 * 298.63191 * 16 15 13 18 18 N 1.46920 * 108.77580 * 54.63833 * 17 16 15 19 19 C 1.36939 * 120.63582 * 126.36663 * 18 17 16 20 20 H 1.07993 * 120.00338 * 209.20987 * 19 18 17 21 21 C 1.38813 * 119.99951 * 29.20476 * 19 18 17 22 22 N 1.31629 * 119.99850 * 24.22959 * 21 19 18 23 23 Si 1.86795 * 120.00361 * 204.23281 * 21 19 18 24 24 H 1.48500 * 109.47463 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.46959 * 299.99858 * 23 21 19 26 26 H 1.48498 * 109.47181 * 59.99934 * 23 21 19 27 27 C 1.46931 * 118.73802 * 306.63465 * 18 17 16 28 28 H 1.09006 * 109.46739 * 274.30473 * 1 2 3 29 29 H 1.08993 * 109.47347 * 34.30602 * 1 2 3 30 30 H 1.08999 * 109.47089 * 154.31039 * 1 2 3 31 31 H 1.09004 * 109.47332 * 205.69140 * 3 2 1 32 32 H 1.09000 * 109.47491 * 325.69632 * 3 2 1 33 33 H 1.09006 * 109.46647 * 85.69480 * 3 2 1 34 34 H 1.09001 * 117.49458 * 145.03803 * 4 2 1 35 35 H 1.08993 * 117.51607 * 359.97438 * 4 2 1 36 36 H 0.96703 * 117.00220 * 180.02562 * 8 6 5 37 37 H 0.97000 * 120.00236 * 0.02562 * 11 9 5 38 38 H 1.09004 * 109.46812 * 59.99969 * 12 11 9 39 39 H 1.09001 * 109.47002 * 300.00769 * 12 11 9 40 40 H 1.08999 * 109.46845 * 61.29266 * 15 13 12 41 41 H 1.09005 * 109.46134 * 301.33261 * 15 13 12 42 42 H 1.09004 * 109.49599 * 178.68183 * 16 15 13 43 43 H 1.08998 * 109.52068 * 58.60136 * 16 15 13 44 44 H 1.08993 * 109.59025 * 294.84561 * 17 16 15 45 45 H 1.09001 * 109.58413 * 174.42141 * 17 16 15 46 46 H 0.97003 * 119.99345 * 5.77448 * 22 21 19 47 47 H 1.09003 * 109.58722 * 173.14742 * 27 18 17 48 48 H 1.08991 * 109.58659 * 293.57504 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2371 -1.1215 -0.7652 5 6 2.2366 -1.1210 0.7648 6 6 3.5291 -0.7812 1.4611 7 8 3.9689 0.3427 1.4034 8 8 4.1918 -1.7269 2.1452 9 6 1.3721 -2.1404 1.4610 10 8 0.1640 -2.0520 1.4032 11 7 1.9417 -3.1505 2.1480 12 6 1.1014 -4.1412 2.8253 13 6 1.9905 -5.1708 3.5255 14 1 2.6838 -4.6588 4.1930 15 6 1.1180 -6.1325 4.3353 16 6 2.0085 -7.1427 5.0624 17 6 2.7972 -7.9566 4.0318 18 7 3.5267 -7.0301 3.1555 19 6 4.8779 -7.1590 2.9742 20 1 5.4789 -6.2887 2.7557 21 6 5.4752 -8.4083 3.0715 22 7 4.7643 -9.4958 2.8607 23 14 7.2877 -8.5461 3.5016 24 1 7.6792 -9.9779 3.5433 25 1 8.0953 -7.8414 2.4737 26 1 7.5296 -7.9285 4.8302 27 6 2.7799 -5.9590 2.4819 28 1 -0.3633 0.0771 1.0248 29 1 -0.3634 0.8488 -0.5792 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1824 1.3084 -0.4455 32 1 1.5812 2.0743 -0.5792 33 1 2.2773 1.7412 1.0248 34 1 3.1723 -0.8756 -1.2681 35 1 1.6123 -1.8595 -1.2682 36 1 5.0161 -1.4612 2.5754 37 1 2.9080 -3.2211 2.1946 38 1 0.4703 -4.6440 2.0925 39 1 0.4739 -3.6416 3.5633 40 1 0.4414 -6.6618 3.6642 41 1 0.5373 -5.5687 5.0655 42 1 1.3878 -7.8127 5.6574 43 1 2.7019 -6.6130 5.7156 44 1 2.1094 -8.5574 3.4368 45 1 3.5047 -8.6081 4.5447 46 1 3.8462 -9.4236 2.5560 47 1 3.4761 -5.2927 1.9725 48 1 2.0907 -6.3935 1.7580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603321783.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:09 Heat of formation + Delta-G solvation = -111.611749 kcal Electronic energy + Delta-G solvation = -28979.230294 eV Core-core repulsion = 25034.277284 eV Total energy + Delta-G solvation = -3944.953010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.36849 -40.60099 -39.71868 -38.53988 -37.01454 -36.37763 -34.82078 -32.28889 -32.15174 -30.78668 -28.40035 -27.51739 -27.03810 -26.02442 -24.01201 -23.45051 -22.44974 -21.60045 -20.82178 -20.14634 -19.55321 -19.30680 -18.34804 -17.05368 -16.97400 -16.51527 -16.46100 -16.08434 -15.87599 -15.43540 -15.36176 -15.21700 -15.05801 -14.85505 -14.63362 -14.26653 -14.11290 -13.89566 -13.71016 -13.62803 -13.25677 -13.01830 -12.94939 -12.70860 -12.62444 -12.42308 -12.30581 -11.98646 -11.95487 -11.91599 -11.75149 -11.68387 -11.47683 -11.44024 -11.09656 -10.98914 -10.61935 -10.45407 -10.10310 -8.91255 -8.22126 -5.40024 0.80058 1.34529 1.59291 1.66705 1.77649 1.85111 2.09989 2.44399 2.66700 3.22961 3.25865 3.40727 3.49137 3.61484 3.83959 3.92148 3.97383 3.98067 4.04702 4.27070 4.43656 4.45971 4.50597 4.57909 4.65452 4.74236 4.77186 4.78818 4.83413 4.84855 4.99418 5.00130 5.00749 5.04521 5.11706 5.20931 5.24288 5.25837 5.29429 5.37598 5.48958 5.54122 5.55651 5.85902 6.40833 6.46499 6.79706 7.07792 7.13734 7.79296 8.24910 9.02056 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.003375 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.146794 B = 8294.262504 C = 9414.140413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.052 4.052 3 C -0.104 4.104 4 C -0.105 4.105 5 C -0.197 4.197 6 C 0.525 3.475 7 O -0.515 6.515 8 O -0.513 6.513 9 C 0.550 3.450 10 O -0.554 6.554 11 N -0.711 5.711 12 C 0.136 3.864 13 C -0.100 4.100 14 H 0.072 0.928 15 C -0.097 4.097 16 C -0.126 4.126 17 C 0.152 3.848 18 N -0.616 5.616 19 C -0.353 4.353 20 H 0.054 0.946 21 C -0.076 4.076 22 N -0.945 5.945 23 Si 1.114 2.886 24 H -0.295 1.295 25 H -0.275 1.275 26 H -0.279 1.279 27 C 0.156 3.844 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.436 0.564 37 H 0.413 0.587 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.002 0.998 45 H 0.041 0.959 46 H 0.253 0.747 47 H 0.050 0.950 48 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.252 19.474 -3.236 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.053 4.053 3 C -0.161 4.161 4 C -0.142 4.142 5 C -0.202 4.202 6 C 0.368 3.632 7 O -0.404 6.404 8 O -0.329 6.329 9 C 0.336 3.664 10 O -0.434 6.434 11 N -0.366 5.366 12 C 0.012 3.988 13 C -0.121 4.121 14 H 0.090 0.910 15 C -0.135 4.135 16 C -0.165 4.165 17 C 0.027 3.973 18 N -0.340 5.340 19 C -0.483 4.483 20 H 0.072 0.928 21 C -0.272 4.272 22 N -0.587 5.587 23 Si 0.938 3.062 24 H -0.221 1.221 25 H -0.200 1.200 26 H -0.205 1.205 27 C 0.031 3.969 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.301 0.699 37 H 0.254 0.746 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.019 0.981 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -6.060 18.639 -3.130 19.848 hybrid contribution -0.063 0.515 0.067 0.523 sum -6.123 19.154 -3.063 20.341 Atomic orbital electron populations 1.21374 0.89552 1.02510 1.02324 1.21972 0.96292 0.90929 0.96094 1.21443 1.00065 0.92113 1.02445 1.23604 1.04346 1.01086 0.85206 1.21357 0.94706 1.05843 0.98288 1.21729 0.83853 0.82176 0.75442 1.90730 1.67959 1.22414 1.59303 1.84261 1.41613 1.43528 1.63495 1.19218 0.87502 0.81161 0.78548 1.90698 1.14631 1.75625 1.62397 1.46291 1.12041 1.26447 1.51855 1.21328 0.92803 0.88596 0.96065 1.21619 0.97256 0.95412 0.97764 0.90966 1.21346 0.96889 0.96450 0.98798 1.21916 0.98335 0.98466 0.97741 1.20852 0.93443 0.91892 0.91162 1.44325 1.04710 1.33926 1.51082 1.20230 0.84145 0.94433 1.49512 0.92825 1.27191 1.09223 0.91692 0.99141 1.70904 1.11382 1.30434 1.45935 0.82870 0.70876 0.75340 0.77065 1.22136 1.20032 1.20522 1.20896 0.93486 0.89798 0.92728 0.92749 0.90107 0.92217 0.91709 0.89956 0.92582 0.85250 0.85989 0.69912 0.74584 0.91932 0.90685 0.92241 0.89795 0.90708 0.92761 0.98052 0.94042 0.93692 0.93103 0.97536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 8.09 71.98 0.58 -1.35 16 2 C -0.05 -0.99 2.70 -52.16 -0.14 -1.13 16 3 C -0.10 -1.76 8.09 71.98 0.58 -1.18 16 4 C -0.11 -1.81 9.23 30.62 0.28 -1.53 16 5 C -0.20 -4.34 2.56 -53.67 -0.14 -4.48 16 6 C 0.53 11.33 7.84 71.23 0.56 11.89 16 7 O -0.52 -12.38 13.87 21.96 0.30 -12.07 16 8 O -0.51 -9.36 10.51 -51.35 -0.54 -9.90 16 9 C 0.55 14.67 7.36 87.66 0.65 15.31 16 10 O -0.55 -16.99 13.10 -3.02 -0.04 -17.03 16 11 N -0.71 -18.79 5.14 -463.05 -2.38 -21.17 16 12 C 0.14 3.69 5.07 86.38 0.44 4.13 16 13 C -0.10 -3.10 2.36 -10.86 -0.03 -3.12 16 14 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.10 -2.85 5.17 30.62 0.16 -2.69 16 16 C -0.13 -4.40 6.08 30.67 0.19 -4.22 16 17 C 0.15 7.07 4.70 86.36 0.41 7.47 16 18 N -0.62 -30.10 2.84 -699.96 -1.99 -32.08 16 19 C -0.35 -19.27 9.48 84.03 0.80 -18.48 16 20 H 0.05 2.88 7.94 -2.91 -0.02 2.85 16 21 C -0.08 -4.27 4.69 84.86 0.40 -3.87 16 22 N -0.94 -57.32 12.45 21.65 0.27 -57.05 16 23 Si 1.11 49.91 29.98 68.60 2.06 51.97 16 24 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.16 6.21 5.58 86.22 0.48 6.69 16 28 H 0.05 1.24 7.25 -2.38 -0.02 1.23 16 29 H 0.08 1.14 7.92 -2.39 -0.02 1.12 16 30 H 0.06 1.27 7.02 -2.39 -0.02 1.25 16 31 H 0.06 1.13 7.02 -2.39 -0.02 1.11 16 32 H 0.08 1.04 7.92 -2.39 -0.02 1.02 16 33 H 0.06 1.12 7.26 -2.38 -0.02 1.11 16 34 H 0.13 1.80 8.05 -2.39 -0.02 1.78 16 35 H 0.12 2.00 8.05 -2.39 -0.02 1.98 16 36 H 0.44 4.31 9.10 -74.06 -0.67 3.63 16 37 H 0.41 10.70 4.86 -92.71 -0.45 10.25 16 38 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 44 H 0.00 0.07 7.85 -2.39 -0.02 0.05 16 45 H 0.04 2.20 6.39 -2.39 -0.02 2.18 16 46 H 0.25 15.72 6.71 -92.71 -0.62 15.09 16 47 H 0.05 2.00 7.13 -2.39 -0.02 1.99 16 48 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -70.63 373.86 2.89 -67.73 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.00 Total: 26.16 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.21 Total: 3.45 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -4.10 Total: -110.31 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.27 Total: -39.01 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.06 Total: 51.97 kcal Total: -70.63 2.89 -67.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603321783.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.881 kcal (2) G-P(sol) polarization free energy of solvation -70.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds