Wall clock time and date at job start Tue Mar 31 2020 13:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00191 * 2 1 4 4 H 1.48501 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47074 * 299.99749 * 3 2 1 6 6 H 1.48491 * 109.47364 * 59.99852 * 3 2 1 7 7 C 1.37879 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00356 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99931 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50030 * 60.05947 * 9 7 2 11 11 C 1.53040 * 109.52526 * 180.14371 * 9 7 2 12 12 C 1.53040 * 109.54025 * 181.32916 * 11 9 7 13 13 C 1.53627 * 109.24041 * 298.51305 * 12 11 9 14 14 N 1.46929 * 108.54328 * 54.85431 * 13 12 11 15 15 C 1.34777 * 120.62766 * 126.37283 * 14 13 12 16 16 O 1.21586 * 119.99597 * 184.94342 * 15 14 13 17 17 N 1.34774 * 120.00248 * 4.93232 * 15 14 13 18 18 C 1.46501 * 120.00217 * 175.01520 * 17 15 14 19 19 H 1.08993 * 110.05572 * 325.04435 * 18 17 15 20 20 C 1.54270 * 110.02921 * 86.45821 * 18 17 15 21 21 C 1.54887 * 104.31029 * 95.61118 * 20 18 17 22 22 C 1.55236 * 102.59120 * 37.93024 * 21 20 18 23 23 H 1.09007 * 110.46702 * 80.77340 * 22 21 20 24 24 C 1.52995 * 110.46923 * 203.38986 * 22 21 20 25 25 C 1.50697 * 109.47580 * 289.81270 * 24 22 21 26 26 O 1.20825 * 120.00044 * 359.97438 * 25 24 22 27 27 O 1.34230 * 120.00338 * 180.02562 * 25 24 22 28 28 C 1.53873 * 110.03637 * 203.62469 * 18 17 15 29 29 C 1.46920 * 118.73577 * 306.09405 * 14 13 12 30 30 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.45875 * 301.35510 * 11 9 7 32 32 H 1.09007 * 109.46142 * 61.32279 * 11 9 7 33 33 H 1.08999 * 109.49606 * 58.58529 * 12 11 9 34 34 H 1.08994 * 109.50013 * 178.65197 * 12 11 9 35 35 H 1.09001 * 109.73563 * 295.11389 * 13 12 11 36 36 H 1.09005 * 109.65900 * 174.54748 * 13 12 11 37 37 H 0.97005 * 120.00209 * 355.02234 * 17 15 14 38 38 H 1.08994 * 110.48737 * 214.35411 * 20 18 17 39 39 H 1.09003 * 110.48516 * 336.86459 * 20 18 17 40 40 H 1.09000 * 110.75296 * 156.32760 * 21 20 18 41 41 H 1.09003 * 110.75951 * 279.68971 * 21 20 18 42 42 H 1.09005 * 109.47106 * 49.81146 * 24 22 21 43 43 H 1.09001 * 109.47154 * 169.80434 * 24 22 21 44 44 H 0.96689 * 117.00255 * 180.02562 * 27 25 24 45 45 H 1.09007 * 110.03202 * 359.97438 * 28 18 17 46 46 H 1.08999 * 110.03256 * 121.38037 * 28 18 17 47 47 H 1.09006 * 109.58443 * 173.65553 * 29 14 13 48 48 H 1.09004 * 109.58327 * 294.07068 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6253 -2.5580 -0.8900 11 6 2.2443 -3.6633 0.0048 12 6 1.4798 -4.9887 -0.0287 13 6 0.6015 -5.0983 1.2270 14 7 -0.2572 -3.9084 1.3020 15 6 -1.5939 -4.0328 1.4211 16 8 -2.3013 -3.0443 1.3917 17 7 -2.1464 -5.2527 1.5725 18 6 -3.5862 -5.3802 1.8112 19 1 -3.9392 -4.5484 2.4206 20 6 -4.3440 -5.4100 0.4678 21 6 -4.5337 -6.9178 0.1686 22 6 -4.8180 -7.5088 1.5756 23 1 -5.8612 -7.3534 1.8507 24 6 -4.4699 -8.9983 1.6105 25 6 -5.4671 -9.7668 0.7823 26 8 -6.3645 -9.1832 0.2220 27 8 -5.3591 -11.0999 0.6679 28 6 -3.8877 -6.7147 2.5155 29 6 0.3696 -2.5806 1.2509 30 1 -0.4850 0.8401 0.0004 31 1 2.8891 -3.5937 -0.8713 32 1 2.8529 -3.6181 0.9080 33 1 0.8520 -5.0241 -0.9190 34 1 2.1881 -5.8168 -0.0498 35 1 1.2326 -5.1501 2.1142 36 1 -0.0182 -5.9929 1.1641 37 1 -1.5908 -6.0463 1.5235 38 1 -5.3106 -4.9156 0.5640 39 1 -3.7510 -4.9373 -0.3152 40 1 -5.3816 -7.0756 -0.4981 41 1 -3.6243 -7.3453 -0.2537 42 1 -3.4692 -9.1472 1.2048 43 1 -4.5012 -9.3547 2.6401 44 1 -6.0218 -11.5491 0.1259 45 1 -2.9627 -7.2677 2.6793 46 1 -4.3861 -6.5304 3.4672 47 1 -0.4032 -1.8133 1.2039 48 1 0.9821 -2.4313 2.1401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:46 Heat of formation + Delta-G solvation = -135.980473 kcal Electronic energy + Delta-G solvation = -28353.160949 eV Core-core repulsion = 24407.151232 eV Total energy + Delta-G solvation = -3946.009717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73087 -39.86826 -38.31465 -36.67666 -36.30301 -33.85802 -33.14116 -31.78439 -30.87724 -29.65215 -28.51188 -26.25090 -25.01988 -24.17142 -22.14291 -21.80067 -20.83099 -20.15381 -19.62828 -18.74111 -18.34379 -17.46541 -17.11060 -16.31568 -16.14723 -15.89909 -15.38004 -14.72625 -14.51776 -14.40477 -13.88314 -13.69369 -13.55907 -13.42289 -13.26700 -12.76010 -12.71272 -12.53618 -12.24064 -11.92765 -11.88664 -11.66620 -11.45015 -11.34084 -11.10341 -10.98086 -10.90367 -10.84743 -10.69030 -10.65383 -10.46465 -10.35937 -10.19729 -9.84184 -9.36018 -9.06324 -8.89798 -8.66533 -8.38278 -7.58898 -5.94414 -4.03682 1.88429 2.68857 3.27818 3.34406 3.41165 3.43983 3.88729 4.24118 4.38786 4.40518 4.48546 4.61361 4.83070 5.00632 5.09950 5.18566 5.28246 5.33257 5.35210 5.43558 5.51115 5.52343 5.59143 5.64072 5.73101 5.75158 5.97654 6.01075 6.13517 6.18908 6.20534 6.25538 6.33109 6.34201 6.61958 6.70570 6.83981 6.97312 7.03177 7.09083 7.39955 7.55261 7.56206 7.79501 7.97668 8.11220 8.45235 8.65592 9.00253 9.33196 9.61757 11.10356 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.002570 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.557494 B =10893.704774 C =11463.418125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.116 3.884 14 N -0.624 5.624 15 C 0.699 3.301 16 O -0.581 6.581 17 N -0.750 5.750 18 C 0.163 3.837 19 H 0.088 0.912 20 C -0.134 4.134 21 C -0.119 4.119 22 C -0.083 4.083 23 H 0.088 0.912 24 C -0.107 4.107 25 C 0.476 3.524 26 O -0.510 6.510 27 O -0.522 6.522 28 C -0.124 4.124 29 C 0.129 3.871 30 H 0.262 0.738 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.388 0.612 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.409 0.591 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.123 0.877 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 -22.222 4.709 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.171 4.171 13 C -0.008 4.008 14 N -0.360 5.360 15 C 0.400 3.600 16 O -0.458 6.458 17 N -0.410 5.410 18 C 0.057 3.943 19 H 0.106 0.894 20 C -0.173 4.173 21 C -0.157 4.157 22 C -0.102 4.102 23 H 0.106 0.894 24 C -0.144 4.144 25 C 0.319 3.681 26 O -0.398 6.398 27 O -0.334 6.334 28 C -0.162 4.162 29 C 0.008 3.992 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.224 0.776 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.268 0.732 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.141 0.859 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.313 -20.950 4.806 23.045 hybrid contribution 0.354 0.084 -0.448 0.577 sum -7.959 -20.866 4.358 22.753 Atomic orbital electron populations 1.69913 1.05660 1.26633 1.49272 1.25062 0.94872 0.99207 0.94941 0.86562 0.80031 0.83955 0.77602 1.19839 1.21060 1.20998 1.21109 0.92878 0.90158 1.51812 0.92394 1.18980 0.92597 0.92134 0.94282 0.95374 1.21614 0.98537 0.94138 1.00454 1.22016 0.98563 0.99061 0.97482 1.21561 0.93305 0.87545 0.98390 1.47786 1.03559 1.08760 1.75935 1.15995 0.82528 0.83300 0.78165 1.90931 1.60433 1.36677 1.57727 1.45534 1.08356 1.07197 1.79879 1.21258 0.80073 0.97195 0.95798 0.89400 1.22789 1.00736 0.95724 0.98041 1.22677 1.01512 0.95717 0.95749 1.21954 1.00716 0.90670 0.96843 0.89367 1.21498 0.98038 0.94507 1.00399 1.23617 0.85001 0.80333 0.79188 1.90737 1.34289 1.69854 1.44873 1.84544 1.57375 1.22675 1.68800 1.22498 0.99711 0.95416 0.98595 1.22163 0.98314 0.80699 0.98020 0.92745 0.93136 0.93241 0.92223 0.92460 0.92245 0.92232 0.77621 0.90982 0.90700 0.90723 0.91838 0.87471 0.87578 0.73242 0.90779 0.90396 0.85884 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 11.39 55.43 0.63 -25.31 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.21 8.57 -34.44 -0.29 -14.51 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 12 C -0.13 -2.11 6.10 -26.39 -0.16 -2.27 16 13 C 0.12 1.76 6.42 -3.48 -0.02 1.74 16 14 N -0.62 -12.50 2.97 -178.23 -0.53 -13.03 16 15 C 0.70 14.12 8.28 -86.92 -0.72 13.40 16 16 O -0.58 -14.58 15.49 5.29 0.08 -14.50 16 17 N -0.75 -10.78 4.95 -57.58 -0.29 -11.06 16 18 C 0.16 2.05 3.19 -66.81 -0.21 1.84 16 19 H 0.09 1.30 7.68 -51.93 -0.40 0.90 16 20 C -0.13 -1.72 6.52 -25.07 -0.16 -1.88 16 21 C -0.12 -1.22 5.77 -24.55 -0.14 -1.36 16 22 C -0.08 -0.67 2.45 -88.78 -0.22 -0.89 16 23 H 0.09 0.77 7.90 -51.92 -0.41 0.36 16 24 C -0.11 -0.65 5.16 -27.89 -0.14 -0.79 16 25 C 0.48 3.79 8.14 36.00 0.29 4.08 16 26 O -0.51 -5.75 15.50 -18.75 -0.29 -6.04 16 27 O -0.52 -3.11 13.42 -39.26 -0.53 -3.63 16 28 C -0.12 -1.02 6.14 -25.62 -0.16 -1.18 16 29 C 0.13 3.15 5.41 -3.72 -0.02 3.13 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.70 5.64 -51.93 -0.29 0.40 16 37 H 0.39 4.44 5.78 -40.82 -0.24 4.21 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.17 8.04 -51.93 -0.42 0.76 16 40 H 0.07 0.85 7.31 -51.93 -0.38 0.47 16 41 H 0.06 0.62 7.97 -51.93 -0.41 0.21 16 42 H 0.11 0.53 8.02 -51.93 -0.42 0.11 16 43 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.41 0.91 9.10 45.56 0.41 1.32 16 45 H 0.07 0.51 7.30 -51.92 -0.38 0.13 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.12 3.55 5.11 -51.93 -0.27 3.29 16 48 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -35.00 376.72 -9.63 -44.62 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.96 Total: 5.46 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.40 Total: 1.40 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.18 Total: -49.40 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.74 Total: -24.17 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.00 -9.63 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.360 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds