Wall clock time and date at job start Tue Mar 31 2020 13:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99887 * 2 1 4 4 H 1.48503 * 109.46852 * 239.99544 * 3 2 1 5 5 H 1.48502 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47397 * 119.99540 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99819 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00114 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.49608 * 299.93596 * 9 7 2 11 11 C 1.53042 * 109.49492 * 179.83929 * 9 7 2 12 12 C 1.53078 * 109.65463 * 178.74911 * 11 9 7 13 13 C 1.53192 * 109.29354 * 61.15266 * 12 11 9 14 14 N 1.46924 * 108.89418 * 305.57721 * 13 12 11 15 15 C 1.34782 * 120.62812 * 233.51971 * 14 13 12 16 16 O 1.21579 * 119.99634 * 174.77255 * 15 14 13 17 17 N 1.34773 * 119.99971 * 354.76792 * 15 14 13 18 18 C 1.46500 * 119.99664 * 184.98679 * 17 15 14 19 19 H 1.09001 * 110.01494 * 325.69994 * 18 17 15 20 20 C 1.54260 * 110.03401 * 87.09432 * 18 17 15 21 21 C 1.55015 * 104.13966 * 95.68509 * 20 18 17 22 22 C 1.54888 * 102.75307 * 37.95148 * 21 20 18 23 23 H 1.08999 * 110.48669 * 80.72849 * 22 21 20 24 24 C 1.53001 * 110.48276 * 203.37010 * 22 21 20 25 25 C 1.50704 * 109.47178 * 289.77272 * 24 22 21 26 26 O 1.20823 * 119.99781 * 0.02562 * 25 24 22 27 27 O 1.34228 * 119.99662 * 180.02562 * 25 24 22 28 28 C 1.53875 * 110.03222 * 204.30910 * 18 17 15 29 29 C 1.46926 * 118.73782 * 53.53744 * 14 13 12 30 30 H 0.96998 * 119.99884 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46100 * 298.70372 * 11 9 7 32 32 H 1.08995 * 109.46279 * 58.68142 * 11 9 7 33 33 H 1.09006 * 109.39014 * 301.27622 * 12 11 9 34 34 H 1.08999 * 109.61893 * 181.16895 * 12 11 9 35 35 H 1.09007 * 109.58273 * 185.71836 * 13 12 11 36 36 H 1.08997 * 109.58491 * 65.43929 * 13 12 11 37 37 H 0.96995 * 120.00259 * 4.98356 * 17 15 14 38 38 H 1.09001 * 110.49140 * 214.35055 * 20 18 17 39 39 H 1.09006 * 110.48852 * 336.99269 * 20 18 17 40 40 H 1.09007 * 110.75765 * 279.62800 * 21 20 18 41 41 H 1.08999 * 110.74149 * 156.26587 * 21 20 18 42 42 H 1.08998 * 109.47342 * 49.77402 * 24 22 21 43 43 H 1.09005 * 109.46815 * 169.77814 * 24 22 21 44 44 H 0.96702 * 116.99644 * 180.02562 * 27 25 24 45 45 H 1.09002 * 110.02934 * 0.02562 * 28 18 17 46 46 H 1.09007 * 110.03295 * 121.38160 * 28 18 17 47 47 H 1.09002 * 109.58475 * 66.17984 * 29 14 13 48 48 H 1.09007 * 109.58371 * 186.46251 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6248 -2.5576 0.8908 11 6 2.2452 -3.6628 -0.0029 12 6 1.4838 -4.9904 0.0286 13 6 0.6034 -5.0988 -1.2204 14 7 -0.2553 -3.9094 -1.3018 15 6 -1.5920 -4.0344 -1.4216 16 8 -2.2999 -3.0465 -1.3924 17 7 -2.1437 -5.2546 -1.5739 18 6 -3.5833 -5.3828 -1.8135 19 1 -4.1220 -4.6031 -1.2750 20 6 -3.8786 -5.2823 -3.3243 21 6 -3.9430 -6.7573 -3.7965 22 6 -4.6464 -7.4652 -2.6119 23 1 -5.7253 -7.3203 -2.6672 24 6 -4.3050 -8.9566 -2.6004 25 6 -4.9789 -9.6352 -3.7650 26 8 -5.6618 -8.9920 -4.5264 27 8 -4.8205 -10.9543 -3.9564 28 6 -4.0715 -6.7700 -1.3606 29 6 0.3707 -2.5812 -1.2504 30 1 -0.4850 0.8400 -0.0004 31 1 2.8544 -3.6172 -0.9054 32 1 2.8890 -3.5930 0.8738 33 1 0.8572 -5.0273 0.9198 34 1 2.1925 -5.8184 0.0471 35 1 -0.0163 -5.9931 -1.1541 36 1 1.2337 -5.1559 -2.1078 37 1 -1.5876 -6.0479 -1.5250 38 1 -4.8336 -4.7850 -3.4941 39 1 -3.0751 -4.7520 -3.8356 40 1 -2.9408 -7.1590 -3.9467 41 1 -4.5362 -6.8457 -4.7067 42 1 -3.2254 -9.0828 -2.6814 43 1 -4.6540 -9.4019 -1.6687 44 1 -5.2720 -11.3449 -4.7171 45 1 -3.2374 -7.3476 -0.9621 46 1 -4.8473 -6.6635 -0.6022 47 1 0.9838 -2.4316 -2.1392 48 1 -0.4026 -1.8142 -1.2065 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:50 Heat of formation + Delta-G solvation = -136.177314 kcal Electronic energy + Delta-G solvation = -28297.433685 eV Core-core repulsion = 24351.415432 eV Total energy + Delta-G solvation = -3946.018253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74829 -39.87576 -38.33582 -36.69063 -36.31875 -33.86605 -33.14476 -31.78715 -30.90151 -29.66735 -28.51531 -26.27696 -25.01846 -24.18304 -22.15965 -21.80026 -20.83244 -20.16187 -19.65969 -18.72527 -18.35371 -17.45500 -17.14401 -16.32331 -16.15550 -15.88863 -15.38745 -14.81944 -14.47365 -14.42614 -13.87232 -13.69617 -13.53935 -13.42652 -13.32655 -12.80657 -12.69814 -12.53729 -12.22972 -11.94598 -11.88727 -11.65679 -11.46068 -11.35566 -11.13775 -10.98188 -10.92450 -10.83813 -10.72831 -10.67206 -10.49805 -10.35514 -10.19222 -9.83864 -9.36622 -9.06153 -8.91516 -8.66244 -8.37965 -7.59356 -5.94161 -4.03624 1.86969 2.67666 3.28096 3.35922 3.40797 3.41999 3.88328 4.22622 4.38336 4.39810 4.48282 4.60641 4.82010 5.00430 5.09265 5.17839 5.26965 5.31263 5.35185 5.42259 5.49923 5.53066 5.56867 5.64698 5.72864 5.74151 5.97395 5.98613 6.13405 6.17273 6.19686 6.21800 6.26130 6.33768 6.61745 6.70419 6.83921 6.96788 7.02843 7.09159 7.39946 7.53858 7.55959 7.79114 7.97567 8.10960 8.45119 8.65358 8.99799 9.32933 9.61688 11.10604 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026202 B = 0.002522 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.358353 B =11098.945886 C =11771.724924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.117 3.883 14 N -0.623 5.623 15 C 0.699 3.301 16 O -0.581 6.581 17 N -0.750 5.750 18 C 0.160 3.840 19 H 0.091 0.909 20 C -0.134 4.134 21 C -0.119 4.119 22 C -0.083 4.083 23 H 0.088 0.912 24 C -0.107 4.107 25 C 0.476 3.524 26 O -0.511 6.511 27 O -0.522 6.522 28 C -0.124 4.124 29 C 0.129 3.871 30 H 0.264 0.736 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.388 0.612 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.409 0.591 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.038 0.962 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -22.175 -5.516 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.360 5.360 15 C 0.401 3.599 16 O -0.458 6.458 17 N -0.409 5.409 18 C 0.054 3.946 19 H 0.109 0.891 20 C -0.173 4.173 21 C -0.157 4.157 22 C -0.102 4.102 23 H 0.106 0.894 24 C -0.145 4.145 25 C 0.319 3.681 26 O -0.398 6.398 27 O -0.334 6.334 28 C -0.162 4.162 29 C 0.008 3.992 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.224 0.776 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.268 0.732 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.056 0.944 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.249 -20.910 -5.373 23.112 hybrid contribution 0.536 0.112 -0.496 0.739 sum -7.713 -20.798 -5.869 22.945 Atomic orbital electron populations 1.69894 1.05664 1.26875 1.49084 1.25059 0.94875 0.99186 0.94915 0.86673 0.79575 0.83303 0.78524 1.20282 1.21282 1.20330 1.21034 0.92807 0.90181 1.52080 0.92496 1.18966 0.92585 0.92105 0.94260 0.95375 1.21616 0.98566 0.94090 1.00456 1.21951 0.98582 0.99091 0.97540 1.21458 0.93320 0.87555 0.98432 1.47784 1.03570 1.08756 1.75905 1.15987 0.82550 0.83327 0.78066 1.90925 1.60328 1.36664 1.57916 1.45518 1.08460 1.07223 1.79734 1.21280 0.80998 0.96883 0.95425 0.89074 1.22824 1.02353 0.96155 0.95943 1.22636 0.99881 0.95365 0.97769 1.21890 1.01572 0.90782 0.95911 0.89353 1.21503 1.02238 0.95561 0.95157 1.23624 0.78431 0.79823 0.86239 1.90734 1.37642 1.65412 1.46025 1.84549 1.71099 1.25239 1.52481 1.22501 1.01154 0.95453 0.97141 1.22162 0.98313 0.80666 0.98033 0.92621 0.93264 0.93123 0.92234 0.92384 0.92262 0.92325 0.77615 0.90907 0.90945 0.91832 0.90752 0.87467 0.87533 0.73246 0.90766 0.90352 0.94404 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 11.39 55.43 0.63 -25.33 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.25 8.56 -34.44 -0.29 -14.55 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.00 2.26 -91.65 -0.21 0.79 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.17 5.10 -26.67 -0.14 -2.31 16 12 C -0.13 -2.11 6.09 -26.59 -0.16 -2.27 16 13 C 0.12 1.77 6.38 -3.71 -0.02 1.75 16 14 N -0.62 -12.52 2.97 -178.50 -0.53 -13.05 16 15 C 0.70 14.16 8.29 -86.92 -0.72 13.44 16 16 O -0.58 -14.63 15.40 5.30 0.08 -14.54 16 17 N -0.75 -10.79 4.95 -57.58 -0.28 -11.07 16 18 C 0.16 2.02 3.27 -66.82 -0.22 1.80 16 19 H 0.09 1.39 7.52 -51.93 -0.39 0.99 16 20 C -0.13 -1.62 6.54 -25.01 -0.16 -1.79 16 21 C -0.12 -1.16 5.76 -24.67 -0.14 -1.30 16 22 C -0.08 -0.66 2.45 -88.96 -0.22 -0.88 16 23 H 0.09 0.77 7.90 -51.93 -0.41 0.36 16 24 C -0.11 -0.64 5.16 -27.88 -0.14 -0.78 16 25 C 0.48 3.70 8.14 36.01 0.29 4.00 16 26 O -0.51 -5.63 15.49 -18.75 -0.29 -5.92 16 27 O -0.52 -3.03 13.42 -39.25 -0.53 -3.56 16 28 C -0.12 -1.05 6.14 -25.61 -0.16 -1.21 16 29 C 0.13 3.16 5.41 -3.71 -0.02 3.14 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.69 5.65 -51.92 -0.29 0.40 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.39 4.45 5.80 -40.82 -0.24 4.22 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 40 H 0.06 0.58 7.97 -51.93 -0.41 0.17 16 41 H 0.07 0.80 7.29 -51.93 -0.38 0.42 16 42 H 0.11 0.52 8.02 -51.93 -0.42 0.10 16 43 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.41 0.84 9.10 45.56 0.41 1.25 16 45 H 0.07 0.53 7.31 -51.93 -0.38 0.15 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.12 3.55 5.12 -51.93 -0.27 3.28 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -34.92 376.52 -9.63 -44.55 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.96 Total: 5.34 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.41 Total: 1.49 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.18 Total: -49.45 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.74 Total: -24.02 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.92 -9.63 -44.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.625 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds