Wall clock time and date at job start Tue Mar 31 2020 13:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99977 * 2 1 4 4 H 1.48494 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47189 * 299.99880 * 3 2 1 6 6 H 1.48499 * 109.47049 * 59.99895 * 3 2 1 7 7 C 1.37881 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99577 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.57338 * 60.29565 * 9 7 2 11 11 C 1.53036 * 109.27655 * 177.60458 * 10 9 7 12 12 N 1.46850 * 109.51273 * 300.79890 * 11 10 9 13 13 C 1.46895 * 111.00183 * 185.84504 * 12 11 10 14 14 H 1.09001 * 109.40681 * 184.20852 * 13 12 11 15 15 C 1.53071 * 109.40299 * 304.03961 * 13 12 11 16 16 C 1.53290 * 108.45740 * 169.09776 * 15 13 12 17 17 C 1.52921 * 108.61323 * 292.37645 * 16 15 13 18 18 N 1.45747 * 110.48618 * 50.76827 * 17 16 15 19 19 C 1.46503 * 117.94349 * 160.92554 * 18 17 16 20 20 C 1.52997 * 109.47171 * 269.97875 * 19 18 17 21 21 C 1.50699 * 109.47131 * 179.97438 * 20 19 18 22 22 O 1.20829 * 119.99961 * 0.02562 * 21 20 19 23 23 O 1.34231 * 120.00068 * 179.97438 * 21 20 19 24 24 C 1.33355 * 124.11102 * 340.90391 * 18 17 16 25 25 O 1.21283 * 118.24896 * 182.24195 * 24 18 17 26 26 C 1.46851 * 111.19779 * 61.75243 * 12 11 10 27 27 C 1.53042 * 109.52109 * 298.25937 * 26 12 11 28 28 H 0.96999 * 120.00356 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.52011 * 300.12659 * 9 7 2 30 30 H 1.09002 * 109.51383 * 57.65594 * 10 9 7 31 31 H 1.09000 * 109.49192 * 297.53621 * 10 9 7 32 32 H 1.08998 * 109.46149 * 180.79575 * 11 10 9 33 33 H 1.08998 * 109.46831 * 60.80910 * 11 10 9 34 34 H 1.08996 * 109.67186 * 288.75914 * 15 13 12 35 35 H 1.08995 * 109.67192 * 49.29015 * 15 13 12 36 36 H 1.08997 * 109.61929 * 172.64451 * 16 15 13 37 37 H 1.09008 * 109.78020 * 52.19915 * 16 15 13 38 38 H 1.09003 * 109.29675 * 290.46029 * 17 16 15 39 39 H 1.08997 * 109.13430 * 170.97617 * 17 16 15 40 40 H 1.09001 * 109.47015 * 29.98465 * 19 18 17 41 41 H 1.09002 * 109.46794 * 149.98042 * 19 18 17 42 42 H 1.08995 * 109.47336 * 299.99944 * 20 19 18 43 43 H 1.09002 * 109.47125 * 60.00370 * 20 19 18 44 44 H 0.96704 * 116.99880 * 179.97438 * 23 21 20 45 45 H 1.09004 * 109.46333 * 58.26575 * 26 12 11 46 46 H 1.08998 * 109.46874 * 178.25418 * 26 12 11 47 47 H 1.08995 * 109.50462 * 179.12270 * 27 26 12 48 48 H 1.09004 * 109.50212 * 299.19251 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 0.3759 -2.5863 -1.2529 11 6 -0.3400 -3.9387 -1.2763 12 7 0.6538 -5.0198 -1.2756 13 6 0.0076 -6.3290 -1.4373 14 1 0.7581 -7.1156 -1.3584 15 6 -1.0429 -6.5166 -0.3398 16 6 -1.8870 -7.7496 -0.6817 17 6 -2.7114 -7.4451 -1.9332 18 7 -1.8573 -6.9214 -2.9917 19 6 -2.3593 -6.9721 -4.3671 20 6 -1.9416 -8.2943 -5.0139 21 6 -2.4585 -8.3467 -6.4285 22 8 -3.0952 -7.4214 -6.8738 23 8 -2.2108 -9.4210 -7.1942 24 6 -0.6478 -6.3985 -2.7867 25 8 -0.0445 -5.9559 -3.7412 26 6 1.4752 -4.9852 -0.0588 27 6 2.2450 -3.6639 0.0012 28 1 -0.4850 0.8400 -0.0004 29 1 0.6220 -2.5566 0.8889 30 1 1.0009 -2.4899 -2.1407 31 1 -0.3619 -1.7842 -1.2378 32 1 -0.9530 -4.0096 -2.1747 33 1 -0.9752 -4.0287 -0.3951 34 1 -0.5482 -6.6668 0.6197 35 1 -1.6825 -5.6355 -0.2896 36 1 -2.5544 -7.9781 0.1492 37 1 -1.2348 -8.6021 -0.8720 38 1 -3.4766 -6.7079 -1.6898 39 1 -3.1906 -8.3616 -2.2772 40 1 -3.4468 -6.8986 -4.3599 41 1 -1.9427 -6.1414 -4.9367 42 1 -0.8542 -8.3677 -5.0211 43 1 -2.3582 -9.1250 -4.4443 44 1 -2.5631 -9.4091 -8.0947 45 1 0.8313 -5.0703 0.8166 46 1 2.1807 -5.8160 -0.0730 47 1 2.8426 -3.6318 0.9121 48 1 2.9000 -3.5846 -0.8665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:04 Heat of formation + Delta-G solvation = -125.277317 kcal Electronic energy + Delta-G solvation = -28849.757950 eV Core-core repulsion = 24904.212357 eV Total energy + Delta-G solvation = -3945.545593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.00476 -40.36553 -38.13294 -36.57061 -36.38611 -34.95296 -33.18065 -31.45836 -30.59179 -29.79845 -28.37986 -25.92481 -25.40742 -23.63377 -22.51374 -22.18968 -21.55344 -20.93715 -18.90008 -18.40642 -18.07000 -17.15210 -16.78066 -16.47686 -16.11223 -16.08119 -15.80860 -14.82316 -14.55358 -14.40461 -14.19252 -13.84822 -13.77814 -13.49104 -13.28762 -13.17313 -12.72325 -12.60076 -12.43219 -12.13582 -11.86417 -11.84705 -11.62831 -11.41244 -11.38086 -11.23752 -11.10157 -10.92385 -10.89841 -10.73116 -10.43254 -10.11156 -9.94563 -9.47032 -9.37828 -8.93835 -8.86702 -8.66210 -8.25540 -7.70920 -5.93315 -3.98004 1.89950 2.47287 2.70563 3.13456 3.33834 3.41950 3.46180 4.24445 4.45539 4.48654 4.50276 4.55527 4.60641 4.74557 4.87324 4.96285 5.14317 5.18992 5.28008 5.32652 5.37294 5.48620 5.54491 5.66259 5.70100 5.75337 5.79554 5.90618 5.96324 6.14746 6.17552 6.23754 6.29598 6.33797 6.64156 6.64914 6.88193 7.08860 7.17684 7.33678 7.48460 7.56450 7.61672 7.67597 7.85793 8.09593 8.19503 8.29342 8.53018 9.05666 9.66247 11.13023 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.002913 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.189419 B = 9610.902666 C =10368.467569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.103 4.103 11 C 0.057 3.943 12 N -0.511 5.511 13 C 0.077 3.923 14 H 0.105 0.895 15 C -0.165 4.165 16 C -0.130 4.130 17 C 0.113 3.887 18 N -0.610 5.610 19 C 0.120 3.880 20 C -0.129 4.129 21 C 0.485 3.515 22 O -0.513 6.513 23 O -0.519 6.519 24 C 0.523 3.477 25 O -0.518 6.518 26 C 0.062 3.938 27 C -0.107 4.107 28 H 0.258 0.742 29 H 0.020 0.980 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.410 0.590 45 H 0.028 0.972 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 -22.211 -4.776 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.141 4.141 11 C -0.070 4.070 12 N -0.235 5.235 13 C -0.035 4.035 14 H 0.123 0.877 15 C -0.204 4.204 16 C -0.168 4.168 17 C -0.010 4.010 18 N -0.345 5.345 19 C -0.004 4.004 20 C -0.167 4.167 21 C 0.327 3.673 22 O -0.401 6.401 23 O -0.331 6.331 24 C 0.310 3.690 25 O -0.392 6.392 26 C -0.065 4.065 27 C -0.145 4.145 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.129 0.871 43 H 0.123 0.877 44 H 0.269 0.731 45 H 0.046 0.954 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.534 -21.479 -5.376 23.388 hybrid contribution -0.479 0.665 0.107 0.826 sum -8.013 -20.814 -5.270 22.918 Atomic orbital electron populations 1.69881 1.05858 1.26140 1.51286 1.24969 0.94839 0.99012 0.95246 0.86581 0.80208 0.84025 0.77447 1.19834 1.21094 1.21200 1.21244 0.92926 0.90636 1.49824 0.92690 1.18683 0.92671 0.91800 0.93842 1.21649 1.00223 0.92680 0.99531 1.22327 0.93160 0.93119 0.98358 1.62011 1.23049 0.99951 1.38510 1.21607 0.95634 0.95632 0.90663 0.87686 1.22463 0.98897 0.98940 1.00087 1.21811 0.99332 0.98596 0.97071 1.21431 0.93106 0.98945 0.87511 1.47394 1.17614 1.62208 1.07284 1.21191 0.99840 0.96533 0.82830 1.21719 1.04541 1.01645 0.88843 1.23327 0.76377 0.78991 0.88636 1.90758 1.37829 1.37224 1.74281 1.84535 1.74259 1.44174 1.30134 1.20142 0.80410 0.76783 0.91628 1.90724 1.61443 1.44722 1.42293 1.22150 0.95528 0.99640 0.89175 1.21689 0.98767 0.93545 1.00458 0.93210 0.96180 0.93658 0.88983 0.92988 0.95478 0.90433 0.90074 0.89811 0.90998 0.91500 0.90844 0.89626 0.88221 0.87075 0.87655 0.73063 0.95386 0.92302 0.93019 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 11.37 55.43 0.63 -25.07 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 10 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 11 C 0.06 1.16 4.64 -3.83 -0.02 1.14 16 12 N -0.51 -9.29 4.37 -228.34 -1.00 -10.29 16 13 C 0.08 1.09 2.41 -69.08 -0.17 0.92 16 14 H 0.11 1.35 8.02 -51.93 -0.42 0.93 16 15 C -0.16 -1.84 4.61 -26.54 -0.12 -1.97 16 16 C -0.13 -0.98 6.02 -26.62 -0.16 -1.14 16 17 C 0.11 0.88 6.32 -4.49 -0.03 0.85 16 18 N -0.61 -6.86 2.81 -174.96 -0.49 -7.35 16 19 C 0.12 1.29 4.51 -4.04 -0.02 1.27 16 20 C -0.13 -1.10 6.13 -27.89 -0.17 -1.27 16 21 C 0.48 4.63 8.33 36.00 0.30 4.93 16 22 O -0.51 -6.58 16.74 -18.75 -0.31 -6.90 16 23 O -0.52 -3.70 13.42 -39.26 -0.53 -4.23 16 24 C 0.52 7.83 5.79 -11.87 -0.07 7.76 16 25 O -0.52 -9.95 15.86 5.55 0.09 -9.87 16 26 C 0.06 1.09 5.11 -3.83 -0.02 1.07 16 27 C -0.11 -2.25 5.32 -26.65 -0.14 -2.39 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 2.50 6.18 -51.93 -0.32 2.18 16 32 H 0.05 1.07 7.02 -51.93 -0.36 0.71 16 33 H 0.03 0.53 6.35 -51.93 -0.33 0.20 16 34 H 0.08 0.83 7.32 -51.93 -0.38 0.45 16 35 H 0.08 1.05 5.90 -51.93 -0.31 0.75 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.49 8.13 -51.92 -0.42 0.07 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.39 8.10 -51.93 -0.42 -0.04 16 40 H 0.09 0.80 7.97 -51.93 -0.41 0.38 16 41 H 0.10 1.41 7.09 -51.93 -0.37 1.04 16 42 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.41 1.26 9.10 45.56 0.41 1.68 16 45 H 0.03 0.47 7.08 -51.93 -0.37 0.10 16 46 H 0.06 0.89 8.03 -51.93 -0.42 0.48 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -34.41 373.25 -9.38 -43.80 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.04 Total: 0.92 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.34 Total: -3.29 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.86 Total: -42.71 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.75 Total: -20.99 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.41 -9.38 -43.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.481 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds