Wall clock time and date at job start Tue Mar 31 2020 13:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99977 * 2 1 4 4 H 1.48494 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47189 * 299.99880 * 3 2 1 6 6 H 1.48499 * 109.47049 * 59.99895 * 3 2 1 7 7 C 1.37881 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99577 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.57338 * 60.29565 * 9 7 2 11 11 C 1.53036 * 109.27655 * 177.60458 * 10 9 7 12 12 N 1.46850 * 109.51273 * 300.79890 * 11 10 9 13 13 C 1.46895 * 111.00183 * 185.84504 * 12 11 10 14 14 H 1.09001 * 109.40681 * 184.20852 * 13 12 11 15 15 C 1.53071 * 109.40299 * 304.03961 * 13 12 11 16 16 C 1.53290 * 108.45740 * 169.09776 * 15 13 12 17 17 C 1.52921 * 108.61323 * 292.37645 * 16 15 13 18 18 N 1.45747 * 110.48618 * 50.76827 * 17 16 15 19 19 C 1.46503 * 117.94349 * 160.92554 * 18 17 16 20 20 C 1.52997 * 109.47171 * 269.97875 * 19 18 17 21 21 C 1.50699 * 109.47131 * 179.97438 * 20 19 18 22 22 O 1.20829 * 119.99961 * 0.02562 * 21 20 19 23 23 O 1.34231 * 120.00068 * 179.97438 * 21 20 19 24 24 C 1.33355 * 124.11102 * 340.90391 * 18 17 16 25 25 O 1.21283 * 118.24896 * 182.24195 * 24 18 17 26 26 C 1.46851 * 111.19779 * 61.75243 * 12 11 10 27 27 C 1.53042 * 109.52109 * 298.25937 * 26 12 11 28 28 H 0.96999 * 120.00356 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.52011 * 300.12659 * 9 7 2 30 30 H 1.09002 * 109.51383 * 57.65594 * 10 9 7 31 31 H 1.09000 * 109.49192 * 297.53621 * 10 9 7 32 32 H 1.08998 * 109.46149 * 180.79575 * 11 10 9 33 33 H 1.08998 * 109.46831 * 60.80910 * 11 10 9 34 34 H 1.08996 * 109.67186 * 288.75914 * 15 13 12 35 35 H 1.08995 * 109.67192 * 49.29015 * 15 13 12 36 36 H 1.08997 * 109.61929 * 172.64451 * 16 15 13 37 37 H 1.09008 * 109.78020 * 52.19915 * 16 15 13 38 38 H 1.09003 * 109.29675 * 290.46029 * 17 16 15 39 39 H 1.08997 * 109.13430 * 170.97617 * 17 16 15 40 40 H 1.09001 * 109.47015 * 29.98465 * 19 18 17 41 41 H 1.09002 * 109.46794 * 149.98042 * 19 18 17 42 42 H 1.08995 * 109.47336 * 299.99944 * 20 19 18 43 43 H 1.09002 * 109.47125 * 60.00370 * 20 19 18 44 44 H 0.96704 * 116.99880 * 179.97438 * 23 21 20 45 45 H 1.09004 * 109.46333 * 58.26575 * 26 12 11 46 46 H 1.08998 * 109.46874 * 178.25418 * 26 12 11 47 47 H 1.08995 * 109.50462 * 179.12270 * 27 26 12 48 48 H 1.09004 * 109.50212 * 299.19251 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 0.3759 -2.5863 -1.2529 11 6 -0.3400 -3.9387 -1.2763 12 7 0.6538 -5.0198 -1.2756 13 6 0.0076 -6.3290 -1.4373 14 1 0.7581 -7.1156 -1.3584 15 6 -1.0429 -6.5166 -0.3398 16 6 -1.8870 -7.7496 -0.6817 17 6 -2.7114 -7.4451 -1.9332 18 7 -1.8573 -6.9214 -2.9917 19 6 -2.3593 -6.9721 -4.3671 20 6 -1.9416 -8.2943 -5.0139 21 6 -2.4585 -8.3467 -6.4285 22 8 -3.0952 -7.4214 -6.8738 23 8 -2.2108 -9.4210 -7.1942 24 6 -0.6478 -6.3985 -2.7867 25 8 -0.0445 -5.9559 -3.7412 26 6 1.4752 -4.9852 -0.0588 27 6 2.2450 -3.6639 0.0012 28 1 -0.4850 0.8400 -0.0004 29 1 0.6220 -2.5566 0.8889 30 1 1.0009 -2.4899 -2.1407 31 1 -0.3619 -1.7842 -1.2378 32 1 -0.9530 -4.0096 -2.1747 33 1 -0.9752 -4.0287 -0.3951 34 1 -0.5482 -6.6668 0.6197 35 1 -1.6825 -5.6355 -0.2896 36 1 -2.5544 -7.9781 0.1492 37 1 -1.2348 -8.6021 -0.8720 38 1 -3.4766 -6.7079 -1.6898 39 1 -3.1906 -8.3616 -2.2772 40 1 -3.4468 -6.8986 -4.3599 41 1 -1.9427 -6.1414 -4.9367 42 1 -0.8542 -8.3677 -5.0211 43 1 -2.3582 -9.1250 -4.4443 44 1 -2.5631 -9.4091 -8.0947 45 1 0.8313 -5.0703 0.8166 46 1 2.1807 -5.8160 -0.0730 47 1 2.8426 -3.6318 0.9121 48 1 2.9000 -3.5846 -0.8665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:03 Heat of formation + Delta-G solvation = -150.026327 kcal Electronic energy + Delta-G solvation = -28850.831148 eV Core-core repulsion = 24904.212357 eV Total energy + Delta-G solvation = -3946.618791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01789 -41.18876 -39.57956 -37.51164 -37.19152 -36.35912 -34.64937 -33.00822 -31.61343 -31.44489 -29.63623 -27.36406 -26.54514 -24.94752 -23.88761 -23.31796 -22.96708 -21.87682 -20.30596 -19.44970 -19.02688 -18.47190 -17.96537 -17.71978 -17.36453 -16.97752 -16.84799 -16.47668 -15.79100 -15.65398 -15.17930 -15.12474 -14.86342 -14.59833 -14.44288 -14.35440 -14.23829 -14.01061 -13.73702 -13.34757 -13.11517 -13.00109 -12.86384 -12.59379 -12.57073 -12.48974 -12.36148 -12.22870 -12.12493 -12.02946 -11.96597 -11.71998 -11.59569 -11.33649 -10.82568 -10.75245 -10.53963 -10.38816 -9.77593 -9.08823 -8.08762 -6.21324 1.16610 1.38211 1.40533 1.51731 1.57778 1.70450 2.38129 2.43094 3.00935 3.18345 3.54248 3.71091 3.81286 3.83576 3.96672 4.05469 4.18999 4.24069 4.30435 4.33079 4.38707 4.47329 4.54689 4.60054 4.67810 4.71833 4.75200 4.81448 4.88955 4.94041 4.94480 5.06340 5.10447 5.11155 5.21932 5.31108 5.35820 5.45711 5.56138 5.59402 5.61778 5.97625 5.99015 6.17137 6.27708 6.40875 6.49049 6.90221 6.95506 7.21969 7.46128 8.96028 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.002913 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.189419 B = 9610.902666 C =10368.467569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.048 3.952 10 C -0.094 4.094 11 C 0.079 3.921 12 N -0.532 5.532 13 C 0.076 3.924 14 H 0.126 0.874 15 C -0.159 4.159 16 C -0.120 4.120 17 C 0.103 3.897 18 N -0.600 5.600 19 C 0.119 3.881 20 C -0.119 4.119 21 C 0.491 3.509 22 O -0.554 6.554 23 O -0.512 6.512 24 C 0.517 3.483 25 O -0.575 6.575 26 C 0.071 3.929 27 C -0.102 4.102 28 H 0.259 0.741 29 H -0.003 1.003 30 H 0.016 0.984 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.034 0.966 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.144 0.856 44 H 0.428 0.572 45 H 0.040 0.960 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 -25.326 -3.672 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.029 3.971 10 C -0.132 4.132 11 C -0.048 4.048 12 N -0.257 5.257 13 C -0.036 4.036 14 H 0.144 0.856 15 C -0.198 4.198 16 C -0.158 4.158 17 C -0.019 4.019 18 N -0.333 5.333 19 C -0.004 4.004 20 C -0.157 4.157 21 C 0.334 3.666 22 O -0.445 6.445 23 O -0.325 6.325 24 C 0.305 3.695 25 O -0.453 6.453 26 C -0.056 4.056 27 C -0.140 4.140 28 H 0.068 0.932 29 H 0.015 0.985 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.121 0.879 43 H 0.162 0.838 44 H 0.290 0.710 45 H 0.058 0.942 46 H 0.111 0.889 47 H 0.080 0.920 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.110 -24.654 -4.261 26.301 hybrid contribution -0.342 1.596 -0.290 1.658 sum -8.452 -23.058 -4.551 24.976 Atomic orbital electron populations 1.70013 1.07092 1.26911 1.51701 1.25747 0.95716 1.02358 0.94948 0.85594 0.79142 0.79921 0.77539 1.19223 1.21003 1.20294 1.21628 0.92987 0.92344 1.50006 0.93182 1.18629 0.93087 0.92696 0.92652 1.21406 0.99114 0.94586 0.98122 1.21898 0.92995 0.91847 0.98076 1.61814 1.23250 1.01416 1.39217 1.21733 0.97000 0.93522 0.91307 0.85650 1.22396 0.98188 1.00039 0.99219 1.21827 0.99382 0.97016 0.97587 1.21809 0.92650 1.00553 0.86839 1.47441 1.16608 1.60791 1.08429 1.21154 1.00376 0.96533 0.82377 1.21623 1.04061 1.01350 0.88695 1.23464 0.75388 0.78665 0.89040 1.90754 1.39897 1.38705 1.75130 1.84492 1.73871 1.42833 1.31348 1.20382 0.81290 0.76481 0.91304 1.90705 1.63301 1.47436 1.43852 1.22072 0.95854 0.98348 0.89355 1.21566 0.98007 0.94199 1.00201 0.93156 0.98477 0.96523 0.92267 0.94078 0.94794 0.89361 0.92295 0.87069 0.89214 0.91417 0.86913 0.87958 0.92535 0.87889 0.83813 0.70966 0.94173 0.88949 0.92013 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.62 11.37 21.45 0.24 -54.37 16 2 C 0.01 0.60 5.31 84.66 0.45 1.05 16 3 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.53 -30.54 8.56 25.60 0.22 -30.32 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.05 2.48 2.16 -11.46 -0.02 2.46 16 10 C -0.09 -4.86 5.12 30.65 0.16 -4.70 16 11 C 0.08 3.32 4.64 86.32 0.40 3.72 16 12 N -0.53 -19.21 4.37 -876.33 -3.83 -23.04 16 13 C 0.08 2.01 2.41 44.03 0.11 2.11 16 14 H 0.13 2.83 8.02 -2.39 -0.02 2.81 16 15 C -0.16 -3.11 4.61 30.72 0.14 -2.97 16 16 C -0.12 -1.26 6.02 30.67 0.18 -1.07 16 17 C 0.10 1.21 6.32 86.49 0.55 1.76 16 18 N -0.60 -12.50 2.81 -826.64 -2.32 -14.83 16 19 C 0.12 2.49 4.51 86.38 0.39 2.88 16 20 C -0.12 -1.80 6.13 29.85 0.18 -1.62 16 21 C 0.49 8.77 8.33 71.24 0.59 9.37 16 22 O -0.55 -14.20 16.74 21.96 0.37 -13.84 16 23 O -0.51 -6.26 13.42 -51.42 -0.69 -6.95 16 24 C 0.52 15.23 5.79 87.71 0.51 15.74 16 25 O -0.57 -22.87 15.86 -3.04 -0.05 -22.92 16 26 C 0.07 2.36 5.11 86.33 0.44 2.80 16 27 C -0.10 -4.32 5.32 30.65 0.16 -4.15 16 28 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 3.42 6.18 -2.39 -0.01 3.40 16 32 H 0.04 1.78 7.02 -2.39 -0.02 1.76 16 33 H 0.03 1.36 6.35 -2.39 -0.02 1.35 16 34 H 0.09 1.56 7.32 -2.39 -0.02 1.54 16 35 H 0.06 1.43 5.90 -2.39 -0.01 1.42 16 36 H 0.11 0.67 8.14 -2.39 -0.02 0.66 16 37 H 0.09 0.71 8.13 -2.38 -0.02 0.69 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 0.54 8.10 -2.39 -0.02 0.52 16 40 H 0.10 1.77 7.97 -2.39 -0.02 1.75 16 41 H 0.06 1.70 7.09 -2.39 -0.02 1.68 16 42 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.43 1.84 9.10 -74.05 -0.67 1.17 16 45 H 0.04 1.26 7.08 -2.39 -0.02 1.24 16 46 H 0.09 2.51 8.03 -2.39 -0.02 2.49 16 47 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -80.55 373.25 0.49 -80.06 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.29 Total: 11.44 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 4.46 Total: -2.93 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -5.91 Total: -92.24 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.37 Total: -43.70 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -80.55 0.49 -80.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.970 kcal (2) G-P(sol) polarization free energy of solvation -80.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds