Wall clock time and date at job start Tue Mar 31 2020 14:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.50057 * 2 1 4 4 O 1.20827 * 120.00274 * 119.93364 * 3 2 1 5 5 O 1.34234 * 119.99699 * 299.93390 * 3 2 1 6 6 C 1.53038 * 109.49877 * 120.09617 * 2 1 3 7 7 C 1.53049 * 109.53594 * 58.58611 * 6 2 1 8 8 C 1.52756 * 109.38633 * 61.23819 * 7 6 2 9 9 N 1.46926 * 109.00853 * 305.59095 * 8 7 6 10 10 C 1.34772 * 120.62648 * 233.57982 * 9 8 7 11 11 O 1.21591 * 119.99680 * 184.74341 * 10 9 8 12 12 N 1.34771 * 120.00508 * 4.74795 * 10 9 8 13 13 C 1.46500 * 120.00253 * 174.92274 * 12 10 9 14 14 H 1.08999 * 110.42988 * 323.90807 * 13 12 10 15 15 C 1.54259 * 110.48866 * 86.45401 * 13 12 10 16 16 C 1.53879 * 106.59930 * 142.42299 * 15 13 12 17 17 C 1.54261 * 106.63858 * 359.97165 * 16 15 13 18 18 H 1.09005 * 110.48482 * 95.09474 * 17 16 15 19 19 C 1.50705 * 110.48608 * 217.73878 * 17 16 15 20 20 H 1.07999 * 120.00212 * 118.54837 * 19 17 16 21 21 C 1.37878 * 119.99858 * 298.54928 * 19 17 16 22 22 N 1.31523 * 119.99959 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00010 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47288 * 90.00040 * 23 21 19 25 25 H 1.48502 * 109.46981 * 209.99608 * 23 21 19 26 26 H 1.48493 * 109.46809 * 329.99744 * 23 21 19 27 27 C 1.54894 * 110.59866 * 201.29601 * 13 12 10 28 28 C 1.46932 * 118.73899 * 53.30844 * 9 8 7 29 29 H 1.08997 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46977 * 300.06641 * 1 2 3 31 31 H 1.09003 * 109.46922 * 60.06528 * 1 2 3 32 32 H 0.96705 * 116.99587 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46288 * 178.59882 * 6 2 1 34 34 H 1.09001 * 109.46215 * 298.56402 * 6 2 1 35 35 H 1.09003 * 109.49391 * 181.31780 * 7 6 2 36 36 H 1.09006 * 109.49440 * 301.37470 * 7 6 2 37 37 H 1.08996 * 109.51125 * 185.70073 * 8 7 6 38 38 H 1.09007 * 109.42633 * 65.42195 * 8 7 6 39 39 H 0.97005 * 119.99761 * 354.92027 * 12 10 9 40 40 H 1.08993 * 110.03300 * 23.13390 * 15 13 12 41 41 H 1.09002 * 110.07166 * 261.72444 * 15 13 12 42 42 H 1.09000 * 110.03010 * 119.28285 * 16 15 13 43 43 H 1.09000 * 110.02842 * 240.66222 * 16 15 13 44 44 H 0.97002 * 119.99848 * 179.97438 * 22 21 19 45 45 H 1.08997 * 110.75553 * 321.63656 * 27 13 12 46 46 H 1.09000 * 110.75532 * 84.82004 * 27 13 12 47 47 H 1.09000 * 109.58697 * 66.42610 * 28 9 8 48 48 H 1.08999 * 109.58333 * 186.71412 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4205 0.0000 4 8 2.7269 1.8157 0.9068 5 8 1.7102 2.2468 -1.0075 6 6 2.0408 -0.7234 1.2481 7 6 1.5030 -2.1562 1.2654 8 6 2.0090 -2.9026 0.0324 9 7 1.6514 -2.1379 -1.1702 10 6 0.9739 -2.7213 -2.1786 11 8 0.7591 -2.1039 -3.2039 12 7 0.5343 -3.9888 -2.0506 13 6 -0.2968 -4.5854 -3.0993 14 1 -0.9668 -3.8383 -3.5248 15 6 0.5868 -5.2077 -4.1999 16 6 -0.1176 -6.4991 -4.6514 17 6 -1.4046 -6.6177 -3.8093 18 1 -2.2539 -6.1993 -4.3496 19 6 -1.6662 -8.0567 -3.4457 20 1 -1.6882 -8.3561 -2.4083 21 6 -1.8775 -8.9909 -4.4375 22 7 -1.8512 -8.6262 -5.7009 23 14 -2.2024 -10.7743 -3.9868 24 1 -3.6631 -10.9849 -3.8215 25 1 -1.6941 -11.6582 -5.0664 26 1 -1.5085 -11.0976 -2.7144 27 6 -1.1051 -5.7821 -2.5392 28 6 2.0413 -0.7234 -1.2498 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 2.0561 3.1488 -0.9634 33 1 3.1305 -0.7449 1.2350 34 1 1.6988 -0.1964 2.1389 35 1 1.8481 -2.6634 2.1663 36 1 0.4132 -2.1358 1.2542 37 1 1.5472 -3.8889 -0.0110 38 1 3.0925 -3.0063 0.0907 39 1 0.7683 -4.5062 -1.2642 40 1 1.5733 -5.4409 -3.7994 41 1 0.6784 -4.5191 -5.0400 42 1 -0.3686 -6.4369 -5.7103 43 1 0.5275 -7.3589 -4.4708 44 1 -1.9994 -9.2835 -6.3986 45 1 -0.5058 -6.3560 -1.8324 46 1 -2.0283 -5.4397 -2.0717 47 1 3.1275 -0.6460 -1.2982 48 1 1.6028 -0.2732 -2.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609809829.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:41 Heat of formation + Delta-G solvation = -131.706691 kcal Electronic energy + Delta-G solvation = -28599.800310 eV Core-core repulsion = 24653.975918 eV Total energy + Delta-G solvation = -3945.824392 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34955 -40.11888 -38.21200 -36.92141 -36.43104 -34.27518 -33.35957 -32.11163 -31.79497 -28.15022 -27.71400 -26.93118 -25.58768 -24.73532 -23.64620 -22.54515 -20.50918 -19.97664 -19.25867 -18.76113 -18.28827 -18.12802 -16.86743 -16.57650 -16.17315 -15.74532 -15.38152 -15.05642 -14.66002 -14.63783 -14.41077 -14.06847 -13.84200 -13.78946 -13.45061 -13.12801 -12.63527 -12.49054 -12.38505 -12.11466 -11.92148 -11.80035 -11.66809 -11.41896 -11.32987 -11.13079 -10.94684 -10.92516 -10.84470 -10.72483 -10.58556 -10.28953 -9.95414 -9.88027 -9.52399 -9.23662 -8.89897 -8.72456 -8.43274 -8.37845 -6.00667 -4.04134 1.78877 2.47855 2.80259 3.29942 3.32257 3.37214 3.39169 3.94329 4.12094 4.34016 4.39959 4.43929 4.58976 4.68905 4.89490 5.04118 5.17863 5.30303 5.31753 5.36793 5.39378 5.46306 5.51469 5.52091 5.58549 5.68652 5.72726 5.77215 5.87844 6.00286 6.12632 6.26512 6.36080 6.38600 6.56449 6.67500 6.75163 6.90660 6.95427 7.00835 7.32479 7.36140 7.52550 7.73574 7.89918 8.02152 8.09311 8.43857 8.75049 8.98398 9.59917 11.08805 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.030313 B = 0.002467 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.483258 B =11347.632509 C =11800.678480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C 0.493 3.507 4 O -0.514 6.514 5 O -0.509 6.509 6 C -0.098 4.098 7 C -0.137 4.137 8 C 0.108 3.892 9 N -0.631 5.631 10 C 0.707 3.293 11 O -0.586 6.586 12 N -0.733 5.733 13 C 0.154 3.846 14 H 0.083 0.917 15 C -0.134 4.134 16 C -0.094 4.094 17 C 0.052 3.948 18 H 0.031 0.969 19 C -0.515 4.515 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.888 5.888 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.275 1.275 27 C -0.119 4.119 28 C 0.146 3.854 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.410 0.590 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.392 0.608 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.260 0.740 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.067 0.933 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.353 17.418 13.939 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C 0.335 3.665 4 O -0.402 6.402 5 O -0.320 6.320 6 C -0.136 4.136 7 C -0.175 4.175 8 C -0.016 4.016 9 N -0.369 5.369 10 C 0.408 3.592 11 O -0.463 6.463 12 N -0.388 5.388 13 C 0.050 3.950 14 H 0.101 0.899 15 C -0.173 4.173 16 C -0.133 4.133 17 C 0.033 3.967 18 H 0.049 0.951 19 C -0.553 4.553 20 H 0.073 0.927 21 C -0.140 4.140 22 N -0.526 5.526 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.157 4.157 28 C 0.022 3.978 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.269 0.731 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.228 0.772 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.182 17.479 13.190 23.376 hybrid contribution 0.320 -0.629 0.656 0.963 sum 8.501 16.849 13.846 23.407 Atomic orbital electron populations 1.21868 0.90846 1.04024 1.02888 1.20945 0.98933 0.87689 0.99330 1.23260 0.76432 0.88289 0.78568 1.90716 1.35826 1.77173 1.36443 1.84583 1.72029 1.27494 1.47923 1.21458 1.01425 0.95122 0.95598 1.21948 1.02156 0.95204 0.98227 1.21597 1.00572 0.95069 0.84334 1.47158 1.60610 1.10695 1.18477 1.15879 0.78245 0.82122 0.82922 1.90914 1.62865 1.64424 1.28145 1.45621 1.55691 1.12408 1.25104 1.21967 0.91167 0.94765 0.87093 0.89913 1.22634 0.98313 0.98789 0.97552 1.22053 0.97743 0.93148 1.00354 1.19402 0.93715 0.94058 0.89518 0.95106 1.21110 1.48818 0.92721 0.92642 0.92664 1.24985 0.95261 0.98662 0.95069 1.69981 1.49518 1.34073 0.99001 0.86647 0.78416 0.85180 0.78041 1.20751 1.21318 1.19998 1.22872 0.97696 0.94574 1.00572 1.21293 0.99326 0.80396 0.96808 0.90359 0.92129 0.90964 0.73130 0.90719 0.90586 0.89818 0.90559 0.89792 0.91117 0.77203 0.93232 0.92964 0.92526 0.92985 0.93055 0.92151 0.92901 0.91491 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 7.92 37.16 0.29 -0.92 16 2 C -0.07 -0.58 0.71 -155.54 -0.11 -0.69 16 3 C 0.49 4.56 6.93 36.00 0.25 4.81 16 4 O -0.51 -5.94 16.74 -18.75 -0.31 -6.25 16 5 O -0.51 -3.78 13.26 -39.27 -0.52 -4.31 16 6 C -0.10 -0.74 4.01 -26.69 -0.11 -0.85 16 7 C -0.14 -0.89 5.72 -26.83 -0.15 -1.05 16 8 C 0.11 0.85 6.40 -3.94 -0.03 0.82 16 9 N -0.63 -7.00 2.42 -178.76 -0.43 -7.43 16 10 C 0.71 10.68 8.29 -86.93 -0.72 9.96 16 11 O -0.59 -11.21 15.54 5.29 0.08 -11.13 16 12 N -0.73 -10.67 5.03 -57.06 -0.29 -10.96 16 13 C 0.15 2.76 3.12 -66.27 -0.21 2.55 16 14 H 0.08 1.60 7.74 -51.93 -0.40 1.20 16 15 C -0.13 -2.62 6.53 -25.61 -0.17 -2.78 16 16 C -0.09 -2.18 5.40 -25.61 -0.14 -2.32 16 17 C 0.05 1.25 2.80 -90.07 -0.25 0.99 16 18 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 19 C -0.51 -13.64 8.40 -34.44 -0.29 -13.93 16 20 H 0.06 1.43 7.78 -52.49 -0.41 1.02 16 21 C 0.06 1.69 5.33 -17.82 -0.09 1.59 16 22 N -0.89 -25.23 12.35 55.43 0.68 -24.54 16 23 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C -0.12 -2.27 5.89 -24.70 -0.15 -2.42 16 28 C 0.15 1.50 5.03 -3.71 -0.02 1.49 16 29 H 0.08 0.74 5.97 -51.93 -0.31 0.43 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 32 H 0.41 1.27 9.10 45.56 0.41 1.68 16 33 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.53 6.34 -51.93 -0.33 0.20 16 37 H 0.08 0.62 5.57 -51.93 -0.29 0.33 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.39 4.68 6.00 -40.82 -0.24 4.44 16 40 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.41 7.94 -51.93 -0.41 1.00 16 43 H 0.05 1.27 7.83 -51.93 -0.41 0.86 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.06 1.11 7.94 -51.93 -0.41 0.69 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.11 1.33 7.03 -51.93 -0.37 0.96 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -32.84 375.55 -8.97 -41.82 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.94 Total: 4.02 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.89 Total: -2.73 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.03 Total: -42.93 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.75 Total: -21.69 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.84 -8.97 -41.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609809829.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.891 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds