Wall clock time and date at job start Tue Mar 31 2020 14:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.50057 * 2 1 4 4 O 1.20827 * 120.00274 * 119.93364 * 3 2 1 5 5 O 1.34234 * 119.99699 * 299.93390 * 3 2 1 6 6 C 1.53038 * 109.49877 * 120.09617 * 2 1 3 7 7 C 1.53049 * 109.53594 * 58.58611 * 6 2 1 8 8 C 1.52756 * 109.38633 * 61.23819 * 7 6 2 9 9 N 1.46926 * 109.00853 * 305.59095 * 8 7 6 10 10 C 1.34772 * 120.62648 * 233.57982 * 9 8 7 11 11 O 1.21591 * 119.99680 * 184.74341 * 10 9 8 12 12 N 1.34771 * 120.00508 * 4.74795 * 10 9 8 13 13 C 1.46500 * 120.00253 * 174.92274 * 12 10 9 14 14 H 1.08999 * 110.42988 * 323.90807 * 13 12 10 15 15 C 1.54259 * 110.48866 * 86.45401 * 13 12 10 16 16 C 1.53879 * 106.59930 * 142.42299 * 15 13 12 17 17 C 1.54261 * 106.63858 * 359.97165 * 16 15 13 18 18 H 1.09005 * 110.48482 * 95.09474 * 17 16 15 19 19 C 1.50705 * 110.48608 * 217.73878 * 17 16 15 20 20 H 1.07999 * 120.00212 * 118.54837 * 19 17 16 21 21 C 1.37878 * 119.99858 * 298.54928 * 19 17 16 22 22 N 1.31523 * 119.99959 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00010 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47288 * 90.00040 * 23 21 19 25 25 H 1.48502 * 109.46981 * 209.99608 * 23 21 19 26 26 H 1.48493 * 109.46809 * 329.99744 * 23 21 19 27 27 C 1.54894 * 110.59866 * 201.29601 * 13 12 10 28 28 C 1.46932 * 118.73899 * 53.30844 * 9 8 7 29 29 H 1.08997 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46977 * 300.06641 * 1 2 3 31 31 H 1.09003 * 109.46922 * 60.06528 * 1 2 3 32 32 H 0.96705 * 116.99587 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46288 * 178.59882 * 6 2 1 34 34 H 1.09001 * 109.46215 * 298.56402 * 6 2 1 35 35 H 1.09003 * 109.49391 * 181.31780 * 7 6 2 36 36 H 1.09006 * 109.49440 * 301.37470 * 7 6 2 37 37 H 1.08996 * 109.51125 * 185.70073 * 8 7 6 38 38 H 1.09007 * 109.42633 * 65.42195 * 8 7 6 39 39 H 0.97005 * 119.99761 * 354.92027 * 12 10 9 40 40 H 1.08993 * 110.03300 * 23.13390 * 15 13 12 41 41 H 1.09002 * 110.07166 * 261.72444 * 15 13 12 42 42 H 1.09000 * 110.03010 * 119.28285 * 16 15 13 43 43 H 1.09000 * 110.02842 * 240.66222 * 16 15 13 44 44 H 0.97002 * 119.99848 * 179.97438 * 22 21 19 45 45 H 1.08997 * 110.75553 * 321.63656 * 27 13 12 46 46 H 1.09000 * 110.75532 * 84.82004 * 27 13 12 47 47 H 1.09000 * 109.58697 * 66.42610 * 28 9 8 48 48 H 1.08999 * 109.58333 * 186.71412 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4205 0.0000 4 8 2.7269 1.8157 0.9068 5 8 1.7102 2.2468 -1.0075 6 6 2.0408 -0.7234 1.2481 7 6 1.5030 -2.1562 1.2654 8 6 2.0090 -2.9026 0.0324 9 7 1.6514 -2.1379 -1.1702 10 6 0.9739 -2.7213 -2.1786 11 8 0.7591 -2.1039 -3.2039 12 7 0.5343 -3.9888 -2.0506 13 6 -0.2968 -4.5854 -3.0993 14 1 -0.9668 -3.8383 -3.5248 15 6 0.5868 -5.2077 -4.1999 16 6 -0.1176 -6.4991 -4.6514 17 6 -1.4046 -6.6177 -3.8093 18 1 -2.2539 -6.1993 -4.3496 19 6 -1.6662 -8.0567 -3.4457 20 1 -1.6882 -8.3561 -2.4083 21 6 -1.8775 -8.9909 -4.4375 22 7 -1.8512 -8.6262 -5.7009 23 14 -2.2024 -10.7743 -3.9868 24 1 -3.6631 -10.9849 -3.8215 25 1 -1.6941 -11.6582 -5.0664 26 1 -1.5085 -11.0976 -2.7144 27 6 -1.1051 -5.7821 -2.5392 28 6 2.0413 -0.7234 -1.2498 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 2.0561 3.1488 -0.9634 33 1 3.1305 -0.7449 1.2350 34 1 1.6988 -0.1964 2.1389 35 1 1.8481 -2.6634 2.1663 36 1 0.4132 -2.1358 1.2542 37 1 1.5472 -3.8889 -0.0110 38 1 3.0925 -3.0063 0.0907 39 1 0.7683 -4.5062 -1.2642 40 1 1.5733 -5.4409 -3.7994 41 1 0.6784 -4.5191 -5.0400 42 1 -0.3686 -6.4369 -5.7103 43 1 0.5275 -7.3589 -4.4708 44 1 -1.9994 -9.2835 -6.3986 45 1 -0.5058 -6.3560 -1.8324 46 1 -2.0283 -5.4397 -2.0717 47 1 3.1275 -0.6460 -1.2982 48 1 1.6028 -0.2732 -2.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609809829.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:40 Heat of formation + Delta-G solvation = -152.402739 kcal Electronic energy + Delta-G solvation = -28600.697758 eV Core-core repulsion = 24653.975918 eV Total energy + Delta-G solvation = -3946.721840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.14979 -41.12462 -39.33589 -38.28911 -37.16065 -35.51449 -34.73331 -33.48364 -32.78343 -29.93518 -28.94960 -28.01092 -26.51299 -25.81732 -25.19827 -23.23786 -21.64384 -21.50063 -20.70125 -19.83295 -19.13388 -18.97435 -18.39351 -17.56375 -17.33940 -16.78225 -16.59831 -16.41681 -15.99710 -15.73158 -15.64179 -15.07498 -14.81058 -14.65546 -14.37416 -14.20561 -14.05488 -13.77034 -13.64308 -13.29396 -13.02704 -12.82966 -12.74984 -12.61184 -12.51374 -12.39179 -12.32575 -12.12829 -11.99613 -11.96784 -11.63448 -11.57311 -11.49340 -11.37192 -11.16920 -10.99586 -10.71980 -10.45076 -10.11003 -9.50274 -8.07659 -6.17741 1.04499 1.45032 1.45863 1.55314 1.58275 2.06979 2.16752 2.47156 2.95274 3.23841 3.42467 3.62356 3.73748 3.94136 3.98929 4.06376 4.08560 4.24572 4.28694 4.45579 4.47065 4.61246 4.65651 4.71247 4.74302 4.80332 4.82955 4.87830 4.91732 5.01992 5.05817 5.09257 5.11562 5.14076 5.18038 5.37549 5.40948 5.46320 5.49783 5.55129 5.69753 5.70290 5.91971 5.97898 6.01631 6.41022 6.93830 6.93892 7.01112 7.50107 7.59449 9.01443 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.030313 B = 0.002467 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.483258 B =11347.632509 C =11800.678480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C 0.498 3.502 4 O -0.538 6.538 5 O -0.511 6.511 6 C -0.095 4.095 7 C -0.130 4.130 8 C 0.100 3.900 9 N -0.621 5.621 10 C 0.705 3.295 11 O -0.631 6.631 12 N -0.722 5.722 13 C 0.170 3.830 14 H 0.067 0.933 15 C -0.123 4.123 16 C -0.083 4.083 17 C 0.040 3.960 18 H -0.003 1.003 19 C -0.526 4.526 20 H 0.062 0.938 21 C 0.008 3.992 22 N -0.923 5.923 23 Si 0.954 3.046 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.263 1.263 27 C -0.102 4.102 28 C 0.146 3.854 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.428 0.572 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.408 0.592 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.025 0.975 43 H 0.034 0.966 44 H 0.258 0.742 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.246 17.272 16.817 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.065 4.065 3 C 0.341 3.659 4 O -0.427 6.427 5 O -0.324 6.324 6 C -0.133 4.133 7 C -0.167 4.167 8 C -0.022 4.022 9 N -0.358 5.358 10 C 0.406 3.594 11 O -0.512 6.512 12 N -0.379 5.379 13 C 0.065 3.935 14 H 0.085 0.915 15 C -0.162 4.162 16 C -0.122 4.122 17 C 0.021 3.979 18 H 0.016 0.984 19 C -0.564 4.564 20 H 0.080 0.920 21 C -0.190 4.190 22 N -0.562 5.562 23 Si 0.780 3.220 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.187 1.187 27 C -0.140 4.140 28 C 0.022 3.978 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.290 0.710 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.247 0.753 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.100 17.352 16.134 25.381 hybrid contribution 0.052 -0.498 -0.271 0.569 sum 9.151 16.854 15.864 24.889 Atomic orbital electron populations 1.21823 0.90883 1.03670 1.02862 1.20923 0.98827 0.87557 0.99188 1.23279 0.75793 0.88536 0.78310 1.90710 1.36956 1.77696 1.37377 1.84557 1.71849 1.28801 1.47197 1.21462 1.01478 0.95608 0.94757 1.21925 1.01965 0.94437 0.98415 1.21916 1.01832 0.95180 0.83253 1.47141 1.59166 1.11076 1.18458 1.15988 0.78346 0.81898 0.83136 1.90892 1.64610 1.65395 1.30313 1.45254 1.55254 1.12534 1.24824 1.21498 0.90792 0.93964 0.87264 0.91485 1.22493 0.98902 0.96720 0.98045 1.21826 0.97518 0.94359 0.98479 1.19398 0.92775 0.93936 0.91804 0.98435 1.21521 1.48012 0.93917 0.92918 0.91968 1.25807 0.95308 1.02925 0.94998 1.70129 1.50802 1.35290 0.99997 0.85620 0.78319 0.80099 0.78002 1.20371 1.21542 1.18679 1.22649 0.98747 0.94133 0.98443 1.21298 0.99779 0.79982 0.96748 0.90833 0.90849 0.92303 0.70981 0.90610 0.90330 0.87311 0.90788 0.88861 0.89443 0.75266 0.91732 0.93752 0.95632 0.94684 0.93285 0.90536 0.91660 0.90421 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 7.92 71.98 0.57 -1.62 16 2 C -0.06 -0.99 0.71 -52.85 -0.04 -1.03 16 3 C 0.50 8.56 6.93 71.23 0.49 9.05 16 4 O -0.54 -11.64 16.74 21.96 0.37 -11.27 16 5 O -0.51 -7.05 13.26 -51.45 -0.68 -7.74 16 6 C -0.10 -1.18 4.01 30.62 0.12 -1.06 16 7 C -0.13 -1.24 5.72 30.53 0.17 -1.06 16 8 C 0.10 1.24 6.40 86.22 0.55 1.80 16 9 N -0.62 -12.63 2.42 -837.74 -2.02 -14.65 16 10 C 0.70 20.45 8.29 179.06 1.48 21.94 16 11 O -0.63 -24.21 15.54 -4.00 -0.06 -24.27 16 12 N -0.72 -19.63 5.03 -452.69 -2.28 -21.90 16 13 C 0.17 5.96 3.12 46.07 0.14 6.10 16 14 H 0.07 2.60 7.74 -2.39 -0.02 2.58 16 15 C -0.12 -4.78 6.53 31.32 0.20 -4.58 16 16 C -0.08 -3.94 5.40 31.32 0.17 -3.77 16 17 C 0.04 1.94 2.80 -10.44 -0.03 1.91 16 18 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 19 C -0.53 -27.81 8.40 25.60 0.22 -27.60 16 20 H 0.06 3.14 7.78 -2.91 -0.02 3.11 16 21 C 0.01 0.44 5.33 84.65 0.45 0.89 16 22 N -0.92 -53.84 12.35 21.45 0.26 -53.57 16 23 Si 0.95 42.75 29.54 68.60 2.03 44.77 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 26 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 27 C -0.10 -3.74 5.89 31.91 0.19 -3.56 16 28 C 0.15 2.84 5.03 86.36 0.43 3.27 16 29 H 0.07 1.27 5.97 -2.39 -0.01 1.25 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 31 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 32 H 0.43 2.10 9.10 -74.05 -0.67 1.43 16 33 H 0.08 0.96 8.13 -2.39 -0.02 0.94 16 34 H 0.08 0.98 8.07 -2.39 -0.02 0.96 16 35 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.79 6.34 -2.38 -0.02 0.77 16 37 H 0.09 1.00 5.57 -2.39 -0.01 0.99 16 38 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.41 8.44 6.00 -92.70 -0.56 7.89 16 40 H 0.06 2.32 8.04 -2.39 -0.02 2.30 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.02 1.32 7.94 -2.39 -0.02 1.30 16 43 H 0.03 1.74 7.83 -2.39 -0.02 1.72 16 44 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.08 2.59 7.94 -2.39 -0.02 2.57 16 46 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.08 2.09 7.03 -2.39 -0.02 2.07 16 Total: -1.00 -72.48 375.55 2.50 -69.99 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.25 Total: 17.96 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 5.14 Total: 0.69 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -4.04 Total: -90.13 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.38 Total: -43.28 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -72.48 2.50 -69.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609809829.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.418 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds