Wall clock time and date at job start Tue Mar 31 2020 14:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36454 * 127.13320 * 2 1 4 4 N 1.38590 * 126.47288 * 0.02562 * 3 2 1 5 5 C 1.46467 * 111.00031 * 54.01654 * 4 3 2 6 6 C 1.53244 * 109.85973 * 197.76878 * 5 4 3 7 7 S 1.81900 * 108.50357 * 297.99295 * 6 5 4 8 8 C 1.81898 * 101.91341 * 51.30871 * 7 6 5 9 9 C 1.52998 * 109.63512 * 188.98821 * 8 7 6 10 10 C 1.53001 * 109.63189 * 68.39630 * 8 7 6 11 11 C 1.46466 * 110.99824 * 179.97438 * 4 3 2 12 12 N 1.31218 * 107.05582 * 179.87407 * 3 2 1 13 13 N 1.28531 * 109.85662 * 0.40805 * 12 3 2 14 14 C 1.30292 * 110.05299 * 359.73911 * 13 12 3 15 15 C 1.50705 * 126.34678 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47015 * 1.34566 * 15 14 13 17 17 C 1.52998 * 109.46863 * 121.34526 * 15 14 13 18 18 C 1.50697 * 109.47103 * 241.34337 * 15 14 13 19 19 H 1.08004 * 120.00347 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00047 * 179.97438 * 18 15 14 21 21 N 1.31521 * 119.99609 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 120.00211 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.46751 * 60.00043 * 22 20 18 24 24 H 1.48494 * 109.46902 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47097 * 300.00245 * 22 20 18 26 26 H 1.09004 * 109.46523 * 265.79266 * 1 2 3 27 27 H 1.09003 * 109.46699 * 145.79626 * 1 2 3 28 28 H 1.08999 * 109.47472 * 25.79343 * 1 2 3 29 29 H 1.09010 * 109.40693 * 317.88599 * 5 4 3 30 30 H 1.08997 * 109.40899 * 77.64633 * 5 4 3 31 31 H 1.09005 * 109.63120 * 178.29470 * 6 5 4 32 32 H 1.08995 * 109.63424 * 57.69935 * 6 5 4 33 33 H 1.09001 * 109.47682 * 179.01168 * 9 8 7 34 34 H 1.09003 * 109.47143 * 299.01442 * 9 8 7 35 35 H 1.09003 * 109.46720 * 59.01224 * 9 8 7 36 36 H 1.08999 * 109.47173 * 300.98615 * 10 8 7 37 37 H 1.08997 * 109.47253 * 60.98598 * 10 8 7 38 38 H 1.09000 * 109.47224 * 180.98836 * 10 8 7 39 39 H 1.08995 * 109.40789 * 282.34879 * 11 4 3 40 40 H 1.09003 * 109.40456 * 42.19479 * 11 4 3 41 41 H 1.09003 * 109.46974 * 60.00007 * 16 15 14 42 42 H 1.08998 * 109.47109 * 179.97438 * 16 15 14 43 43 H 1.09001 * 109.46943 * 299.99910 * 16 15 14 44 44 H 1.08994 * 109.47327 * 66.11400 * 17 15 14 45 45 H 1.09008 * 109.47172 * 186.11226 * 17 15 14 46 46 H 1.09001 * 109.47548 * 306.11269 * 17 15 14 47 47 H 0.97001 * 119.99183 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2888 1.0879 0.0000 4 7 1.8976 2.4174 0.0005 5 6 0.9791 2.6939 1.1074 6 6 0.2266 4.0028 0.8448 7 16 1.4370 5.3581 0.7625 8 6 2.6412 4.7137 -0.4389 9 6 3.8676 5.6276 -0.4782 10 6 1.9989 4.6487 -1.8260 11 6 3.0613 3.3069 0.0009 12 7 3.5212 0.6374 0.0028 13 7 3.5163 -0.6479 -0.0042 14 6 2.2907 -1.0899 -0.0061 15 6 1.8623 -2.5348 -0.0143 16 6 3.1000 -3.4338 0.0138 17 6 0.9985 -2.8175 1.2165 18 6 1.0656 -2.8155 -1.2623 19 1 0.8876 -2.0267 -1.9782 20 6 0.5648 -4.0797 -1.4907 21 7 0.7820 -5.0404 -0.6191 22 14 -0.4221 -4.4278 -3.0380 23 1 0.4166 -4.1530 -4.2323 24 1 -0.8443 -5.8515 -3.0459 25 1 -1.6236 -3.5555 -3.0655 26 1 -0.3632 -0.0754 1.0250 27 1 -0.3633 -0.8500 -0.5777 28 1 -0.3634 0.9252 -0.4472 29 1 0.2636 1.8765 1.1971 30 1 1.5453 2.7814 2.0346 31 1 -0.4775 4.1894 1.6558 32 1 -0.3101 3.9332 -0.1013 33 1 4.5949 5.2296 -1.1858 34 1 3.5659 6.6273 -0.7908 35 1 4.3158 5.6770 0.5142 36 1 1.1211 4.0035 -1.7901 37 1 1.7011 5.6504 -2.1359 38 1 2.7170 4.2458 -2.5404 39 1 3.4825 3.3517 1.0052 40 1 3.8116 2.9219 -0.6897 41 1 3.6762 -3.2308 0.9165 42 1 2.7902 -4.4788 0.0083 43 1 3.7153 -3.2323 -0.8631 44 1 0.0662 -2.2579 1.1425 45 1 0.7789 -3.8840 1.2691 46 1 1.5351 -2.5124 2.1149 47 1 0.4293 -5.9296 -0.7797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647679291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:29 Heat of formation + Delta-G solvation = 75.388509 kcal Electronic energy + Delta-G solvation = -27064.132405 eV Core-core repulsion = 23602.333957 eV Total energy + Delta-G solvation = -3461.798448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.91501 -39.88161 -37.56400 -36.29122 -35.20379 -33.42233 -32.35764 -29.44394 -28.46949 -28.28860 -27.68645 -27.31851 -27.08757 -24.04675 -23.43312 -21.88771 -21.48367 -20.66289 -18.58695 -18.06719 -17.71037 -17.17096 -16.94534 -16.57551 -16.19724 -15.85929 -15.46619 -15.18599 -14.92613 -14.78382 -14.37520 -14.25463 -14.02646 -13.62592 -13.39452 -13.27785 -13.21313 -13.05246 -13.03153 -12.92786 -12.71666 -12.58425 -12.37388 -12.32346 -12.24077 -12.23136 -11.87722 -11.71350 -11.67273 -11.46924 -11.09074 -10.95334 -10.68895 -10.58929 -10.42676 -9.18882 -8.72732 -8.07085 -6.24610 0.68273 0.94955 1.34437 1.44037 1.44388 1.48565 1.53633 1.95966 2.43736 2.53224 3.17090 3.47349 3.49769 3.73763 3.83942 3.90680 3.92955 3.96728 4.12808 4.23231 4.31630 4.40036 4.43364 4.50701 4.65680 4.69842 4.72537 4.74583 4.76746 4.82177 4.86060 4.93123 4.94503 4.96565 5.11242 5.15488 5.18322 5.30046 5.35103 5.47870 5.54683 5.59740 5.68882 5.96927 6.05726 6.25631 6.28470 6.73922 7.43124 7.91810 8.92986 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.003559 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.127588 B = 7866.134137 C = 8120.611011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.475 5.475 3 C 0.341 3.659 4 N -0.447 5.447 5 C 0.045 3.955 6 C -0.065 4.065 7 S -0.273 6.273 8 C -0.011 4.011 9 C -0.126 4.126 10 C -0.127 4.127 11 C 0.084 3.916 12 N -0.361 5.361 13 N -0.343 5.343 14 C 0.229 3.771 15 C 0.143 3.857 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.522 4.522 19 H 0.044 0.956 20 C 0.040 3.960 21 N -0.895 5.895 22 Si 0.948 3.052 23 H -0.286 1.286 24 H -0.283 1.283 25 H -0.266 1.266 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.138 0.862 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.020 0.980 42 H 0.075 0.925 43 H 0.017 0.983 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.016 0.984 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 18.775 2.637 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.168 5.168 3 C -0.017 4.017 4 N -0.171 5.171 5 C -0.084 4.084 6 C -0.214 4.214 7 S -0.045 6.045 8 C -0.122 4.122 9 C -0.185 4.185 10 C -0.186 4.186 11 C -0.045 4.045 12 N -0.205 5.205 13 N -0.180 5.180 14 C -0.040 4.040 15 C 0.140 3.860 16 C -0.164 4.164 17 C -0.175 4.175 18 C -0.560 4.560 19 H 0.062 0.938 20 C -0.162 4.162 21 N -0.532 5.532 22 Si 0.774 3.226 23 H -0.212 1.212 24 H -0.208 1.208 25 H -0.190 1.190 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.039 0.961 42 H 0.094 0.906 43 H 0.036 0.964 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.035 0.965 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.368 19.709 2.843 20.196 hybrid contribution -1.162 -1.859 -0.890 2.367 sum -4.530 17.849 1.953 18.519 Atomic orbital electron populations 1.22432 0.73932 1.06044 1.04780 1.46038 1.09616 1.04691 1.56478 1.22568 0.87056 0.87574 1.04482 1.57935 1.18726 0.96054 1.44411 1.22659 0.95430 0.99603 0.90658 1.23535 0.98184 0.91853 1.07814 1.86951 1.28545 1.30458 1.58576 1.22831 0.97452 0.95008 0.96863 1.21664 0.94524 0.98892 1.03391 1.21927 1.00791 1.02760 0.93154 1.22260 0.89917 0.90305 1.01977 1.74330 1.17113 1.04033 1.25063 1.73877 1.19365 1.02549 1.22228 1.25770 0.85632 0.93118 0.99518 1.16834 0.93666 0.79567 0.95930 1.21480 0.95732 1.01965 0.97260 1.21708 0.97913 1.03605 0.94243 1.20873 1.34150 0.96018 1.05004 0.93777 1.25394 0.96538 0.95613 0.98633 1.69900 1.45065 1.02410 1.35874 0.85769 0.79261 0.77378 0.80150 1.21168 1.20783 1.19040 0.88843 0.88607 0.87464 0.88142 0.92704 0.84419 0.87922 0.90140 0.90177 0.91619 0.92383 0.90576 0.92193 0.92891 0.89619 0.96130 0.90591 0.96368 0.93531 0.90607 0.96494 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.96 7.75 127.77 0.99 2.95 16 2 N -0.47 -17.69 3.19 -538.15 -1.72 -19.41 16 3 C 0.34 12.36 7.22 260.11 1.88 14.24 16 4 N -0.45 -12.08 3.61 -707.22 -2.55 -14.63 16 5 C 0.04 0.94 5.06 86.47 0.44 1.37 16 6 C -0.07 -1.03 6.33 72.06 0.46 -0.57 16 7 S -0.27 -5.17 21.18 -56.49 -1.20 -6.37 16 8 C -0.01 -0.22 0.89 -10.70 -0.01 -0.23 16 9 C -0.13 -2.03 8.53 71.98 0.61 -1.42 16 10 C -0.13 -2.40 8.28 71.98 0.60 -1.81 16 11 C 0.08 2.14 3.78 86.48 0.33 2.47 16 12 N -0.36 -15.75 10.98 -58.00 -0.64 -16.39 16 13 N -0.34 -16.66 11.50 -49.54 -0.57 -17.23 16 14 C 0.23 10.43 6.28 137.64 0.86 11.29 16 15 C 0.14 6.77 0.53 -53.67 -0.03 6.75 16 16 C -0.11 -5.27 7.75 71.98 0.56 -4.72 16 17 C -0.12 -5.06 7.96 71.98 0.57 -4.48 16 18 C -0.52 -25.95 6.55 25.60 0.17 -25.78 16 19 H 0.04 2.25 7.45 -2.91 -0.02 2.22 16 20 C 0.04 1.96 5.15 84.65 0.44 2.39 16 21 N -0.90 -45.39 9.42 21.45 0.20 -45.19 16 22 Si 0.95 39.87 29.54 68.60 2.03 41.90 16 23 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 26 H 0.09 2.18 7.51 -2.38 -0.02 2.16 16 27 H 0.10 3.13 6.17 -2.39 -0.01 3.11 16 28 H 0.11 2.35 7.43 -2.39 -0.02 2.33 16 29 H 0.10 1.97 4.91 -2.38 -0.01 1.96 16 30 H 0.05 1.25 7.91 -2.39 -0.02 1.23 16 31 H 0.14 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.10 1.52 7.54 -2.39 -0.02 1.51 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.21 6.67 -2.39 -0.02 1.19 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.43 7.91 -2.39 -0.02 1.41 16 40 H 0.09 2.53 7.41 -2.39 -0.02 2.51 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 3.94 6.07 -2.39 -0.01 3.92 16 43 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 1.82 6.34 -2.39 -0.02 1.81 16 45 H 0.08 3.58 6.26 -2.38 -0.01 3.57 16 46 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 Total: -1.00 -61.00 363.98 4.37 -56.63 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.96 Total: 18.23 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 7.86 Total: 2.46 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -5.28 Total: -112.85 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -1.20 Total: -6.37 kcal Total: -61.00 4.37 -56.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647679291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.017 kcal (2) G-P(sol) polarization free energy of solvation -60.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds