Wall clock time and date at job start Tue Mar 31 2020 14:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35452 * 126.78156 * 2 1 4 4 C 1.41380 * 103.98715 * 180.09377 * 3 2 1 5 5 C 1.50698 * 126.79905 * 179.88646 * 4 3 2 6 6 O 1.42899 * 109.47163 * 359.71199 * 5 4 3 7 7 C 1.42905 * 113.99778 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46972 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99707 * 0.02562 * 10 8 7 12 12 C 1.50706 * 109.47119 * 89.99922 * 11 10 8 13 13 H 1.07997 * 119.99651 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99828 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99993 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.46983 * 90.00229 * 16 14 12 18 18 H 1.48508 * 109.47132 * 210.00115 * 16 14 12 19 19 H 1.48500 * 109.46926 * 329.99637 * 16 14 12 20 20 C 1.46500 * 120.00169 * 179.97438 * 10 8 7 21 21 C 1.52997 * 109.47110 * 89.99951 * 20 10 8 22 22 C 1.53002 * 109.47254 * 180.02562 * 21 20 10 23 23 C 1.52999 * 109.47094 * 175.00372 * 22 21 20 24 24 C 1.53004 * 109.46927 * 295.00364 * 22 21 20 25 25 N 1.30175 * 106.39617 * 359.62536 * 4 3 2 26 26 O 1.20923 * 111.60623 * 0.24101 * 25 4 3 27 27 H 1.09000 * 109.47326 * 180.30121 * 1 2 3 28 28 H 1.08998 * 109.46827 * 300.30728 * 1 2 3 29 29 H 1.09004 * 109.46708 * 60.30621 * 1 2 3 30 30 H 1.07997 * 128.00296 * 359.96079 * 3 2 1 31 31 H 1.08997 * 109.46854 * 239.70946 * 5 4 3 32 32 H 1.08997 * 109.47005 * 119.71212 * 5 4 3 33 33 H 1.09004 * 109.47054 * 299.99711 * 7 6 5 34 34 H 1.09000 * 109.47187 * 59.99767 * 7 6 5 35 35 H 1.09004 * 109.46865 * 209.99250 * 11 10 8 36 36 H 1.08998 * 109.47138 * 329.99800 * 11 10 8 37 37 H 0.97008 * 119.99442 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.47257 * 210.00712 * 20 10 8 39 39 H 1.08999 * 109.46628 * 330.00315 * 20 10 8 40 40 H 1.08993 * 109.47244 * 300.00346 * 21 20 10 41 41 H 1.09005 * 109.46797 * 60.00308 * 21 20 10 42 42 H 1.08994 * 109.47130 * 55.00073 * 22 21 20 43 43 H 1.09001 * 109.47287 * 60.00281 * 23 22 21 44 44 H 1.09001 * 109.46750 * 180.02562 * 23 22 21 45 45 H 1.08995 * 109.46816 * 299.99919 * 23 22 21 46 46 H 1.08999 * 109.47353 * 59.99764 * 24 22 21 47 47 H 1.09001 * 109.47098 * 179.97438 * 24 22 21 48 48 H 1.09001 * 109.47374 * 299.99669 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3181 1.0849 0.0000 4 6 3.6215 0.5371 -0.0022 5 6 4.9212 1.2999 -0.0056 6 8 4.6501 2.7029 -0.0130 7 6 5.8216 3.5212 -0.0173 8 6 5.4198 4.9736 -0.0256 9 8 4.2459 5.2780 -0.0281 10 7 6.3651 5.9343 -0.0302 11 6 7.7832 5.5665 -0.0277 12 6 8.2700 5.4330 -1.4477 13 1 7.5909 5.6045 -2.2697 14 6 9.5824 5.0919 -1.6973 15 7 10.4092 4.8826 -0.6962 16 14 10.1857 4.9257 -3.4574 17 1 10.6963 6.2370 -3.9315 18 1 11.2767 3.9198 -3.5139 19 1 9.0635 4.4880 -4.3260 20 6 5.9746 7.3462 -0.0388 21 6 5.8371 7.8462 1.4006 22 6 5.4286 9.3206 1.3916 23 6 5.1701 9.7869 2.8257 24 6 6.5529 10.1576 0.7780 25 7 3.4764 -0.7565 0.0048 26 8 2.3095 -1.0737 0.0062 27 1 -0.3634 -1.0276 0.0054 28 1 -0.3633 0.5186 0.8872 29 1 -0.3633 0.5091 -0.8928 30 1 2.0346 2.1270 -0.0006 31 1 5.4950 1.0359 -0.8939 32 1 5.4941 1.0452 0.8860 33 1 6.4137 3.3127 0.8739 34 1 6.4138 3.3033 -0.9061 35 1 8.3581 6.3396 0.4822 36 1 7.9113 4.6165 0.4911 37 1 11.3327 4.6430 -0.8719 38 1 6.7359 7.9307 -0.5554 39 1 5.0204 7.4561 -0.5542 40 1 5.0758 7.2617 1.9171 41 1 6.7913 7.7363 1.9160 42 1 4.5209 9.4425 0.8007 43 1 6.0778 9.6651 3.4167 44 1 4.8786 10.8372 2.8192 45 1 4.3692 9.1907 3.2628 46 1 6.7371 9.8253 -0.2436 47 1 6.2617 11.2079 0.7712 48 1 7.4606 10.0357 1.3689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650189072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:13 Heat of formation + Delta-G solvation = -40.170468 kcal Electronic energy + Delta-G solvation = -27525.140491 eV Core-core repulsion = 23583.285408 eV Total energy + Delta-G solvation = -3941.855083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.92245 -39.34661 -37.60723 -36.42802 -34.75460 -34.18941 -33.37560 -32.61685 -29.90461 -28.23448 -27.83337 -27.11964 -26.93172 -26.04233 -23.20073 -22.96606 -22.55338 -20.34706 -19.75204 -18.46885 -17.71523 -17.37965 -16.72822 -16.52463 -16.10841 -15.80187 -15.14390 -15.00484 -14.73890 -14.37174 -14.19993 -13.89365 -13.71205 -13.59024 -13.43052 -13.19223 -12.61938 -12.56407 -12.45362 -12.37434 -12.12878 -12.00853 -11.71806 -11.62462 -11.47153 -11.17247 -11.10369 -10.93044 -10.82567 -10.67628 -10.47868 -10.26901 -10.19602 -10.10767 -9.78087 -9.46130 -9.27310 -9.04168 -8.62532 -7.77047 -6.26005 -4.34412 1.43692 2.24113 3.02975 3.16944 3.18144 3.25903 3.28338 3.34499 4.01307 4.27283 4.42254 4.74338 5.00272 5.06126 5.06808 5.10782 5.14604 5.17550 5.20076 5.28731 5.34579 5.36773 5.45317 5.64081 5.65409 5.66364 5.72873 5.76486 5.84468 5.88155 5.91394 5.99218 6.01343 6.10899 6.11766 6.24706 6.34461 6.39207 6.60887 6.66381 6.72010 7.03073 7.20252 7.49992 7.69047 7.96521 8.24465 8.25108 8.71578 8.95722 9.34600 10.80331 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.008328 B = 0.003453 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.471501 B = 8107.493305 C =10915.376892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.047 4.047 3 C -0.202 4.202 4 C 0.025 3.975 5 C 0.141 3.859 6 O -0.363 6.363 7 C 0.050 3.950 8 C 0.521 3.479 9 O -0.556 6.556 10 N -0.593 5.593 11 C 0.235 3.765 12 C -0.543 4.543 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.122 3.878 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.145 4.145 24 C -0.150 4.150 25 N -0.365 5.365 26 O 0.098 5.902 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.178 0.822 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.266 0.734 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.093 -1.661 4.195 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C -0.223 4.223 4 C -0.133 4.133 5 C 0.064 3.936 6 O -0.281 6.281 7 C -0.029 4.029 8 C 0.308 3.692 9 O -0.436 6.436 10 N -0.325 5.325 11 C 0.115 3.885 12 C -0.581 4.581 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.723 3.277 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.001 4.001 21 C -0.167 4.167 22 C -0.112 4.112 23 C -0.202 4.202 24 C -0.207 4.207 25 N -0.070 5.070 26 O 0.031 5.969 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.195 0.805 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.805 -2.495 4.244 13.719 hybrid contribution 0.718 0.574 -0.956 1.327 sum -12.086 -1.921 3.288 12.672 Atomic orbital electron populations 1.20301 0.84011 1.04326 1.04164 1.24516 0.96374 0.86105 1.04000 1.22461 0.90741 1.01482 1.07643 1.23220 0.97362 0.89952 1.02803 1.20296 0.89930 0.81253 1.02168 1.87865 1.30412 1.14105 1.95692 1.22325 0.87264 0.89508 1.03798 1.19915 0.85585 0.87015 0.76725 1.90609 1.18088 1.83524 1.51354 1.48139 1.08667 1.04868 1.70833 1.19472 0.74452 0.96964 0.97584 1.21513 0.95705 1.48599 0.92300 0.91959 1.24943 0.96500 0.94735 0.97516 1.69922 1.05501 1.46519 1.30819 0.86524 0.78630 0.78113 0.84436 1.20418 1.20997 1.19711 1.21357 1.01088 0.81581 0.96072 1.21997 1.01721 0.94840 0.98095 1.21045 0.98787 0.94917 0.96501 1.21821 1.01435 1.00459 0.96488 1.21906 0.98429 0.98942 1.01410 1.73763 0.97193 1.15474 1.20616 1.84797 1.11101 1.33183 1.67863 0.90105 0.89230 0.89218 0.80472 0.90619 0.90833 0.90311 0.88656 0.94301 0.94617 0.92423 0.90153 0.91130 0.92018 0.91764 0.91324 0.92793 0.93069 0.92912 0.92092 0.93249 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.45 36.01 0.38 -0.09 16 2 C -0.05 -0.53 7.49 -35.30 -0.26 -0.80 16 3 C -0.20 -2.79 10.45 -39.38 -0.41 -3.20 16 4 C 0.02 0.38 7.28 -82.10 -0.60 -0.22 16 5 C 0.14 2.14 6.56 36.00 0.24 2.38 16 6 O -0.36 -6.52 9.37 -55.14 -0.52 -7.04 16 7 C 0.05 0.93 4.97 36.01 0.18 1.11 16 8 C 0.52 10.91 7.75 -10.99 -0.09 10.82 16 9 O -0.56 -12.79 16.08 -14.35 -0.23 -13.02 16 10 N -0.59 -12.18 2.46 -175.06 -0.43 -12.61 16 11 C 0.24 5.33 4.97 -5.19 -0.03 5.31 16 12 C -0.54 -13.59 9.28 -34.44 -0.32 -13.91 16 13 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -23.71 13.29 55.43 0.74 -22.98 16 16 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 20 C 0.12 2.20 5.16 -4.04 -0.02 2.18 16 21 C -0.13 -2.00 5.01 -26.73 -0.13 -2.13 16 22 C -0.09 -1.21 2.92 -90.62 -0.26 -1.47 16 23 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 24 C -0.15 -1.84 8.95 37.16 0.33 -1.51 16 25 N -0.36 -5.59 12.07 33.42 0.40 -5.18 16 26 O 0.10 1.31 11.20 17.15 0.19 1.50 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.18 2.43 8.05 -52.49 -0.42 2.01 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.34 7.40 -51.93 -0.38 0.96 16 34 H 0.10 1.80 8.00 -51.93 -0.42 1.39 16 35 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.04 0.82 6.44 -51.93 -0.33 0.49 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.08 1.44 6.50 -51.93 -0.34 1.10 16 39 H 0.07 1.31 7.42 -51.93 -0.39 0.92 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -29.94 401.62 -7.65 -37.59 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.08 Total: 1.86 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.76 Total: -1.23 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.71 Total: -40.77 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.56 Total: -18.55 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.94 -7.65 -37.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650189072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.577 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds