Wall clock time and date at job start Tue Mar 31 2020 14:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35452 * 126.78156 * 2 1 4 4 C 1.41380 * 103.98715 * 180.09377 * 3 2 1 5 5 C 1.50698 * 126.79905 * 179.88646 * 4 3 2 6 6 O 1.42899 * 109.47163 * 359.71199 * 5 4 3 7 7 C 1.42905 * 113.99778 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46972 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99707 * 0.02562 * 10 8 7 12 12 C 1.50706 * 109.47119 * 89.99922 * 11 10 8 13 13 H 1.07997 * 119.99651 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99828 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99993 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.46983 * 90.00229 * 16 14 12 18 18 H 1.48508 * 109.47132 * 210.00115 * 16 14 12 19 19 H 1.48500 * 109.46926 * 329.99637 * 16 14 12 20 20 C 1.46500 * 120.00169 * 179.97438 * 10 8 7 21 21 C 1.52997 * 109.47110 * 89.99951 * 20 10 8 22 22 C 1.53002 * 109.47254 * 180.02562 * 21 20 10 23 23 C 1.52999 * 109.47094 * 175.00372 * 22 21 20 24 24 C 1.53004 * 109.46927 * 295.00364 * 22 21 20 25 25 N 1.30175 * 106.39617 * 359.62536 * 4 3 2 26 26 O 1.20923 * 111.60623 * 0.24101 * 25 4 3 27 27 H 1.09000 * 109.47326 * 180.30121 * 1 2 3 28 28 H 1.08998 * 109.46827 * 300.30728 * 1 2 3 29 29 H 1.09004 * 109.46708 * 60.30621 * 1 2 3 30 30 H 1.07997 * 128.00296 * 359.96079 * 3 2 1 31 31 H 1.08997 * 109.46854 * 239.70946 * 5 4 3 32 32 H 1.08997 * 109.47005 * 119.71212 * 5 4 3 33 33 H 1.09004 * 109.47054 * 299.99711 * 7 6 5 34 34 H 1.09000 * 109.47187 * 59.99767 * 7 6 5 35 35 H 1.09004 * 109.46865 * 209.99250 * 11 10 8 36 36 H 1.08998 * 109.47138 * 329.99800 * 11 10 8 37 37 H 0.97008 * 119.99442 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.47257 * 210.00712 * 20 10 8 39 39 H 1.08999 * 109.46628 * 330.00315 * 20 10 8 40 40 H 1.08993 * 109.47244 * 300.00346 * 21 20 10 41 41 H 1.09005 * 109.46797 * 60.00308 * 21 20 10 42 42 H 1.08994 * 109.47130 * 55.00073 * 22 21 20 43 43 H 1.09001 * 109.47287 * 60.00281 * 23 22 21 44 44 H 1.09001 * 109.46750 * 180.02562 * 23 22 21 45 45 H 1.08995 * 109.46816 * 299.99919 * 23 22 21 46 46 H 1.08999 * 109.47353 * 59.99764 * 24 22 21 47 47 H 1.09001 * 109.47098 * 179.97438 * 24 22 21 48 48 H 1.09001 * 109.47374 * 299.99669 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3181 1.0849 0.0000 4 6 3.6215 0.5371 -0.0022 5 6 4.9212 1.2999 -0.0056 6 8 4.6501 2.7029 -0.0130 7 6 5.8216 3.5212 -0.0173 8 6 5.4198 4.9736 -0.0256 9 8 4.2459 5.2780 -0.0281 10 7 6.3651 5.9343 -0.0302 11 6 7.7832 5.5665 -0.0277 12 6 8.2700 5.4330 -1.4477 13 1 7.5909 5.6045 -2.2697 14 6 9.5824 5.0919 -1.6973 15 7 10.4092 4.8826 -0.6962 16 14 10.1857 4.9257 -3.4574 17 1 10.6963 6.2370 -3.9315 18 1 11.2767 3.9198 -3.5139 19 1 9.0635 4.4880 -4.3260 20 6 5.9746 7.3462 -0.0388 21 6 5.8371 7.8462 1.4006 22 6 5.4286 9.3206 1.3916 23 6 5.1701 9.7869 2.8257 24 6 6.5529 10.1576 0.7780 25 7 3.4764 -0.7565 0.0048 26 8 2.3095 -1.0737 0.0062 27 1 -0.3634 -1.0276 0.0054 28 1 -0.3633 0.5186 0.8872 29 1 -0.3633 0.5091 -0.8928 30 1 2.0346 2.1270 -0.0006 31 1 5.4950 1.0359 -0.8939 32 1 5.4941 1.0452 0.8860 33 1 6.4137 3.3127 0.8739 34 1 6.4138 3.3033 -0.9061 35 1 8.3581 6.3396 0.4822 36 1 7.9113 4.6165 0.4911 37 1 11.3327 4.6430 -0.8719 38 1 6.7359 7.9307 -0.5554 39 1 5.0204 7.4561 -0.5542 40 1 5.0758 7.2617 1.9171 41 1 6.7913 7.7363 1.9160 42 1 4.5209 9.4425 0.8007 43 1 6.0778 9.6651 3.4167 44 1 4.8786 10.8372 2.8192 45 1 4.3692 9.1907 3.2628 46 1 6.7371 9.8253 -0.2436 47 1 6.2617 11.2079 0.7712 48 1 7.4606 10.0357 1.3689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650189072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:12 Heat of formation + Delta-G solvation = -54.948258 kcal Electronic energy + Delta-G solvation = -27525.781304 eV Core-core repulsion = 23583.285408 eV Total energy + Delta-G solvation = -3942.495896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.00079 -40.97672 -38.98279 -37.73438 -36.40174 -35.29031 -34.50379 -34.29117 -31.33206 -29.68401 -28.76191 -28.58170 -27.98025 -27.39497 -25.00019 -24.24370 -23.84510 -21.42038 -20.87396 -20.07927 -18.80896 -18.65275 -18.54597 -17.93085 -17.66198 -17.27883 -16.59130 -16.39157 -16.22480 -15.70776 -15.63748 -15.08959 -14.76206 -14.53574 -14.37587 -14.35889 -14.00823 -13.96097 -13.76030 -13.51373 -13.44751 -13.24123 -13.10550 -12.95927 -12.84427 -12.68959 -12.63004 -12.26786 -12.17786 -12.06798 -11.86715 -11.62947 -11.54642 -11.42932 -11.39358 -10.78578 -10.70394 -10.54529 -10.27805 -9.49386 -8.22579 -6.37271 0.44341 1.14419 1.40396 1.43490 1.51464 1.63866 1.72756 2.18536 2.37746 2.62033 3.08122 3.35028 3.59874 3.75110 3.93661 3.98365 4.04223 4.08685 4.12473 4.19106 4.26553 4.32713 4.39002 4.40666 4.46964 4.58689 4.69236 4.74424 4.77075 4.84031 4.87875 4.89306 4.94299 4.97182 5.04989 5.13677 5.14981 5.18239 5.24742 5.33063 5.48508 5.52776 5.61032 5.75665 5.92492 6.02347 6.49939 6.77070 7.20391 7.24058 7.37223 8.82668 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.008328 B = 0.003453 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.471501 B = 8107.493305 C =10915.376892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.022 4.022 3 C -0.231 4.231 4 C 0.006 3.994 5 C 0.139 3.861 6 O -0.376 6.376 7 C 0.058 3.942 8 C 0.515 3.485 9 O -0.579 6.579 10 N -0.594 5.594 11 C 0.250 3.750 12 C -0.550 4.550 13 H 0.053 0.947 14 C 0.027 3.973 15 N -0.916 5.916 16 Si 0.952 3.048 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.272 1.272 20 C 0.119 3.881 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.141 4.141 24 C -0.148 4.148 25 N -0.385 5.385 26 O 0.097 5.903 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.173 0.827 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.269 0.731 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.069 0.931 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.100 -1.536 4.091 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C -0.253 4.253 4 C -0.151 4.151 5 C 0.062 3.938 6 O -0.294 6.294 7 C -0.021 4.021 8 C 0.303 3.697 9 O -0.461 6.461 10 N -0.325 5.325 11 C 0.129 3.871 12 C -0.589 4.589 13 H 0.071 0.929 14 C -0.174 4.174 15 N -0.555 5.555 16 Si 0.778 3.222 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.197 1.197 20 C -0.003 4.003 21 C -0.156 4.156 22 C -0.110 4.110 23 C -0.199 4.199 24 C -0.205 4.205 25 N -0.092 5.092 26 O 0.031 5.969 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.191 0.809 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.814 -2.364 4.142 14.614 hybrid contribution 0.942 0.522 -0.919 1.416 sum -12.872 -1.842 3.223 13.396 Atomic orbital electron populations 1.20600 0.80266 1.06238 1.05669 1.25278 0.98061 0.84621 1.00581 1.22521 0.90766 1.02016 1.09983 1.23347 0.97945 0.90311 1.03538 1.20411 0.90534 0.79777 1.03095 1.87842 1.30248 1.15498 1.95811 1.22192 0.87492 0.88282 1.04160 1.20323 0.85245 0.88013 0.76149 1.90586 1.18889 1.84062 1.52531 1.48170 1.07858 1.05977 1.70510 1.19165 0.75268 0.96296 0.96341 1.21668 0.95783 1.48440 0.92971 0.92919 1.25576 0.96638 0.94459 1.00730 1.69997 1.05815 1.47222 1.32418 0.85642 0.78035 0.78132 0.80424 1.20007 1.20586 1.19719 1.21500 1.00604 0.80427 0.97764 1.21890 1.01021 0.96701 0.95948 1.21039 0.99042 0.92910 0.97962 1.21790 1.01503 1.01541 0.95025 1.21885 0.98027 1.00017 1.00543 1.73750 0.98242 1.15411 1.21779 1.84763 1.10852 1.33767 1.67539 0.88022 0.87504 0.87629 0.80911 0.90050 0.89511 0.88871 0.89184 0.95526 0.94924 0.92228 0.90163 0.91689 0.93259 0.92329 0.91110 0.92724 0.91192 0.93002 0.93159 0.91188 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.45 71.24 0.74 0.01 16 2 C -0.02 -0.47 7.49 25.04 0.19 -0.28 16 3 C -0.23 -6.33 10.45 22.40 0.23 -6.10 16 4 C 0.01 0.18 7.28 43.58 0.32 0.50 16 5 C 0.14 4.25 6.56 71.24 0.47 4.72 16 6 O -0.38 -13.67 9.37 -129.94 -1.22 -14.89 16 7 C 0.06 2.16 4.97 71.24 0.35 2.52 16 8 C 0.51 21.89 7.75 87.66 0.68 22.57 16 9 O -0.58 -27.04 16.08 16.00 0.26 -26.79 16 10 N -0.59 -24.76 2.46 -826.15 -2.03 -26.79 16 11 C 0.25 11.48 4.97 85.63 0.43 11.90 16 12 C -0.55 -27.67 9.28 25.60 0.24 -27.43 16 13 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 14 C 0.03 1.37 5.46 84.65 0.46 1.84 16 15 N -0.92 -48.68 13.29 21.45 0.28 -48.40 16 16 Si 0.95 40.81 29.54 68.60 2.03 42.84 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 C 0.12 4.37 5.16 86.38 0.45 4.81 16 21 C -0.12 -3.67 5.01 30.59 0.15 -3.51 16 22 C -0.09 -2.25 2.92 -10.79 -0.03 -2.28 16 23 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 24 C -0.15 -3.45 8.95 71.98 0.64 -2.81 16 25 N -0.39 -11.72 12.07 -49.55 -0.60 -12.32 16 26 O 0.10 2.52 11.20 71.55 0.80 3.32 16 27 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.17 4.82 8.05 -2.91 -0.02 4.79 16 31 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 3.18 7.40 -2.38 -0.02 3.17 16 34 H 0.09 3.46 8.00 -2.39 -0.02 3.44 16 35 H 0.03 1.29 8.07 -2.38 -0.02 1.27 16 36 H 0.03 1.52 6.44 -2.39 -0.02 1.51 16 37 H 0.27 13.58 8.31 -92.70 -0.77 12.81 16 38 H 0.08 2.92 6.50 -2.39 -0.02 2.90 16 39 H 0.06 2.44 7.42 -2.39 -0.02 2.43 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.05 1.27 6.57 -2.39 -0.02 1.25 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -63.71 401.62 6.44 -57.27 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.93 Total: 21.61 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.98 Total: 4.15 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -2.34 Total: -87.51 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.16 Total: -38.36 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -63.71 6.44 -57.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650189072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.323 kcal (2) G-P(sol) polarization free energy of solvation -63.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds