Wall clock time and date at job start Tue Mar 31 2020 14:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35451 * 126.77545 * 2 1 4 4 C 1.41378 * 103.98285 * 180.09940 * 3 2 1 5 5 C 1.50696 * 126.80360 * 179.89032 * 4 3 2 6 6 O 1.42909 * 109.46924 * 359.70889 * 5 4 3 7 7 C 1.42896 * 113.99801 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46725 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00149 * 354.48882 * 8 7 6 10 10 N 1.34779 * 119.99778 * 174.48486 * 8 7 6 11 11 C 1.46496 * 119.99893 * 185.45163 * 10 8 7 12 12 C 1.50704 * 109.46752 * 90.00427 * 11 10 8 13 13 H 1.07997 * 119.99976 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99935 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00139 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46824 * 60.00130 * 16 14 12 18 18 H 1.48502 * 109.47220 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47265 * 300.00262 * 16 14 12 20 20 C 1.46504 * 120.00171 * 5.46325 * 10 8 7 21 21 C 1.52996 * 109.47362 * 95.78279 * 20 10 8 22 22 C 1.52996 * 109.47070 * 54.29820 * 21 20 10 23 23 C 1.53005 * 109.46873 * 174.29030 * 21 20 10 24 24 C 1.52993 * 109.47463 * 294.29294 * 21 20 10 25 25 N 1.30177 * 106.39533 * 359.62855 * 4 3 2 26 26 O 1.20920 * 111.61009 * 0.23886 * 25 4 3 27 27 H 1.09001 * 109.46633 * 180.29630 * 1 2 3 28 28 H 1.09002 * 109.46846 * 300.29444 * 1 2 3 29 29 H 1.08992 * 109.47321 * 60.29917 * 1 2 3 30 30 H 1.07995 * 128.00505 * 359.96739 * 3 2 1 31 31 H 1.09004 * 109.47609 * 239.71523 * 5 4 3 32 32 H 1.08998 * 109.47679 * 119.70587 * 5 4 3 33 33 H 1.09001 * 109.47369 * 299.99946 * 7 6 5 34 34 H 1.08997 * 109.47602 * 60.00505 * 7 6 5 35 35 H 1.09002 * 109.47654 * 210.00005 * 11 10 8 36 36 H 1.08998 * 109.47635 * 330.00824 * 11 10 8 37 37 H 0.97006 * 120.00300 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.46783 * 215.78930 * 20 10 8 39 39 H 1.08996 * 109.46797 * 335.78032 * 20 10 8 40 40 H 1.08997 * 109.47637 * 59.98952 * 22 21 20 41 41 H 1.08995 * 109.47522 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.46953 * 299.99540 * 22 21 20 43 43 H 1.08998 * 109.47099 * 60.00430 * 23 21 20 44 44 H 1.09001 * 109.46968 * 180.02562 * 23 21 20 45 45 H 1.09005 * 109.47035 * 300.00157 * 23 21 20 46 46 H 1.08997 * 109.47314 * 64.16217 * 24 21 20 47 47 H 1.08997 * 109.47208 * 184.16814 * 24 21 20 48 48 H 1.09001 * 109.47016 * 304.16492 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9211 1.2999 -0.0057 6 8 4.6500 2.7030 -0.0130 7 6 5.8215 3.5213 -0.0172 8 6 5.4196 4.9737 -0.0241 9 8 4.2503 5.2789 -0.1262 10 7 6.3597 5.9335 0.0832 11 6 5.9621 7.3389 0.1967 12 6 5.7911 7.6966 1.6507 13 1 5.9620 6.9517 2.4137 14 6 5.4175 8.9751 2.0068 15 7 5.2098 9.8824 1.0776 16 14 5.2048 9.4183 3.8090 17 1 6.4883 9.2069 4.5254 18 1 4.8030 10.8433 3.9243 19 1 4.1548 8.5572 4.4100 20 6 7.7793 5.5714 0.0860 21 6 8.3442 5.7112 -1.3290 22 6 8.0610 7.1200 -1.8543 23 6 9.8551 5.4717 -1.3009 24 6 7.6816 4.6820 -2.2467 25 7 3.4764 -0.7564 0.0046 26 8 2.3095 -1.0737 0.0060 27 1 -0.3632 -1.0277 0.0053 28 1 -0.3633 0.5184 0.8874 29 1 -0.3633 0.5091 -0.8926 30 1 2.0345 2.1270 -0.0005 31 1 5.4949 1.0362 -0.8942 32 1 5.4942 1.0453 0.8858 33 1 6.4136 3.3127 0.8738 34 1 6.4136 3.3036 -0.9061 35 1 6.7322 7.9714 -0.2448 36 1 5.0197 7.4935 -0.3286 37 1 4.9473 10.7820 1.3282 38 1 8.3218 6.2335 0.7609 39 1 7.8906 4.5403 0.4214 40 1 8.5330 7.8534 -1.2004 41 1 8.4638 7.2199 -2.8621 42 1 6.9846 7.2908 -1.8743 43 1 10.0569 4.4681 -0.9267 44 1 10.2576 5.5718 -2.3089 45 1 10.3272 6.2051 -0.6471 46 1 6.6161 4.8978 -2.3252 47 1 8.1362 4.7314 -3.2361 48 1 7.8205 3.6833 -1.8326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650191099.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:16 Heat of formation + Delta-G solvation = -42.333499 kcal Electronic energy + Delta-G solvation = -28302.157629 eV Core-core repulsion = 24360.208749 eV Total energy + Delta-G solvation = -3941.948879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -45.98109 -41.19136 -39.07054 -38.25311 -35.66832 -35.26372 -34.34701 -34.28608 -31.06428 -29.17398 -28.62264 -28.27397 -28.08293 -27.32278 -26.81981 -24.50248 -23.90989 -21.44502 -20.66898 -19.46418 -18.79345 -18.69531 -18.57395 -17.90783 -17.49267 -17.37945 -16.79801 -16.23989 -16.09001 -15.70166 -15.20003 -14.99347 -14.87465 -14.61250 -14.46636 -14.35501 -14.02400 -13.98862 -13.62263 -13.50639 -13.27026 -13.20277 -12.96133 -12.91451 -12.69983 -12.57158 -12.50176 -12.45583 -12.18395 -12.14836 -11.96274 -11.71982 -11.57812 -11.39306 -11.34023 -10.64719 -10.59918 -10.56063 -10.27932 -9.37245 -8.20633 -6.35056 0.42907 1.14761 1.35936 1.40084 1.46940 1.69578 1.84038 2.15939 2.37301 2.66363 3.08711 3.36021 3.59588 3.70667 3.84355 3.89927 4.04196 4.06941 4.12485 4.14825 4.24070 4.30502 4.40868 4.45582 4.51022 4.61203 4.71079 4.77143 4.81961 4.87491 4.94045 4.95927 4.96776 5.08454 5.10228 5.12496 5.21876 5.22188 5.27106 5.39157 5.46160 5.54984 5.61175 5.83141 5.96523 6.10386 6.71838 6.78374 7.18148 7.28992 7.46847 8.85693 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.003422 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.439254 B = 8179.314976 C =10160.601428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.021 4.021 3 C -0.238 4.238 4 C 0.008 3.992 5 C 0.140 3.860 6 O -0.386 6.386 7 C 0.049 3.951 8 C 0.499 3.501 9 O -0.588 6.588 10 N -0.590 5.590 11 C 0.260 3.740 12 C -0.547 4.547 13 H 0.053 0.947 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.963 3.037 17 H -0.259 1.259 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.109 3.891 21 C -0.082 4.082 22 C -0.142 4.142 23 C -0.130 4.130 24 C -0.143 4.143 25 N -0.381 5.381 26 O 0.094 5.906 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.165 0.835 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.046 0.954 36 H -0.011 1.011 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.031 0.969 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.026 0.974 47 H 0.071 0.929 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 -19.534 -4.555 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.260 4.260 4 C -0.149 4.149 5 C 0.063 3.937 6 O -0.304 6.304 7 C -0.030 4.030 8 C 0.287 3.713 9 O -0.468 6.468 10 N -0.321 5.321 11 C 0.139 3.861 12 C -0.586 4.586 13 H 0.071 0.929 14 C -0.189 4.189 15 N -0.567 5.567 16 Si 0.788 3.212 17 H -0.184 1.184 18 H -0.204 1.204 19 H -0.205 1.205 20 C -0.013 4.013 21 C -0.083 4.083 22 C -0.199 4.199 23 C -0.188 4.188 24 C -0.200 4.200 25 N -0.089 5.089 26 O 0.029 5.971 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.183 0.817 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.063 0.937 36 H 0.007 0.993 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.045 0.955 47 H 0.090 0.910 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.795 -20.118 -4.628 20.989 hybrid contribution -0.639 1.793 0.815 2.070 sum 3.156 -18.325 -3.813 18.982 Atomic orbital electron populations 1.20588 0.80656 1.06239 1.05493 1.25190 0.97935 0.84726 1.00561 1.22521 0.91498 1.01737 1.10219 1.23461 0.98084 0.90291 1.03110 1.20521 0.90129 0.79268 1.03803 1.87943 1.30715 1.15897 1.95850 1.22654 0.88107 0.86863 1.05338 1.20825 0.85455 0.88464 0.76573 1.90648 1.20676 1.84156 1.51363 1.48027 1.06732 1.07238 1.70142 1.18944 0.94753 0.77139 0.95280 1.21773 1.47120 0.96305 0.93398 0.92907 1.25803 0.94657 0.96191 1.02272 1.70043 1.47625 1.04216 1.34785 0.85537 0.79014 0.77117 0.79564 1.18365 1.20402 1.20544 1.21976 0.79742 1.02313 0.97313 1.20979 0.97461 0.95321 0.94531 1.21994 1.00471 0.96629 1.00814 1.21757 0.91606 1.02714 1.02700 1.22033 0.99129 0.98715 1.00162 1.73725 0.98085 1.15228 1.21815 1.84757 1.10979 1.33595 1.67765 0.87836 0.87904 0.87767 0.81722 0.88535 0.88896 0.87658 0.86543 0.93663 0.99294 0.92477 0.90818 0.87762 0.93599 0.91700 0.95024 0.90392 0.91452 0.92695 0.95488 0.90987 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.45 71.24 0.74 -0.08 16 2 C -0.02 -0.44 7.49 25.04 0.19 -0.25 16 3 C -0.24 -6.46 10.45 22.40 0.23 -6.22 16 4 C 0.01 0.23 7.28 43.58 0.32 0.54 16 5 C 0.14 3.32 6.56 71.23 0.47 3.78 16 6 O -0.39 -12.32 9.38 -130.00 -1.22 -13.54 16 7 C 0.05 1.40 4.78 71.24 0.34 1.74 16 8 C 0.50 21.16 6.48 87.66 0.57 21.73 16 9 O -0.59 -32.14 16.06 15.95 0.26 -31.89 16 10 N -0.59 -24.47 2.00 -826.16 -1.65 -26.12 16 11 C 0.26 13.87 3.93 85.64 0.34 14.21 16 12 C -0.55 -31.56 9.39 25.60 0.24 -31.32 16 13 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 14 C 0.01 0.57 5.46 84.66 0.46 1.03 16 15 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 16 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 C 0.11 3.18 4.58 86.38 0.40 3.58 16 21 C -0.08 -2.00 0.85 -52.18 -0.04 -2.05 16 22 C -0.14 -4.41 6.98 71.98 0.50 -3.91 16 23 C -0.13 -2.25 8.47 71.98 0.61 -1.64 16 24 C -0.14 -3.12 6.84 71.98 0.49 -2.63 16 25 N -0.38 -10.33 12.07 -49.55 -0.60 -10.92 16 26 O 0.09 2.28 11.20 71.58 0.80 3.08 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.17 4.89 8.05 -2.91 -0.02 4.87 16 31 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 2.36 7.35 -2.39 -0.02 2.34 16 34 H 0.12 2.51 4.66 -2.39 -0.01 2.50 16 35 H 0.05 2.41 5.32 -2.39 -0.01 2.40 16 36 H -0.01 -0.70 7.35 -2.39 -0.02 -0.72 16 37 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 38 H 0.07 2.31 8.11 -2.39 -0.02 2.29 16 39 H 0.10 2.21 6.11 -2.39 -0.01 2.19 16 40 H 0.04 1.52 7.72 -2.39 -0.02 1.50 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.03 1.22 5.76 -2.38 -0.01 1.21 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.03 0.76 6.75 -2.39 -0.02 0.74 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.08 1.28 6.48 -2.39 -0.02 1.27 16 Total: -1.00 -81.22 386.04 6.71 -74.51 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.95 Total: 15.22 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.85 Total: -1.48 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -1.96 Total: -93.00 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.16 Total: -42.35 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -81.22 6.71 -74.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650191099.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.178 kcal (2) G-P(sol) polarization free energy of solvation -81.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds