Wall clock time and date at job start Tue Mar 31 2020 13:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99971 * 2 1 4 4 H 1.48506 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47217 * 299.99633 * 3 2 1 6 6 H 1.48496 * 109.47425 * 60.00116 * 3 2 1 7 7 C 1.38815 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99476 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.47866 * 126.94702 * 0.04001 * 9 7 2 11 11 C 1.56022 * 105.10539 * 181.96671 * 10 9 7 12 12 H 1.09002 * 116.24638 * 159.68399 * 11 10 9 13 13 C 1.57086 * 99.60690 * 32.80857 * 11 10 9 14 14 C 1.49295 * 126.94313 * 180.02562 * 9 7 2 15 15 H 1.09002 * 116.15127 * 16.73602 * 14 9 7 16 16 C 1.56018 * 104.09183 * 247.59189 * 14 9 7 17 17 N 1.49285 * 104.09427 * 288.76876 * 11 10 9 18 18 C 1.34782 * 126.94685 * 246.70186 * 17 11 10 19 19 O 1.21284 * 119.99719 * 359.97438 * 18 17 11 20 20 C 1.50697 * 120.00063 * 180.02562 * 18 17 11 21 21 C 1.53003 * 109.46968 * 179.97438 * 20 18 17 22 22 O 1.42902 * 109.47016 * 179.97438 * 21 20 18 23 23 C 1.42899 * 113.99953 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.46893 * 180.02562 * 23 22 21 25 25 H 1.09007 * 109.81879 * 305.69456 * 24 23 22 26 26 C 1.54387 * 109.82635 * 184.81824 * 24 23 22 27 27 C 1.55452 * 102.18100 * 219.17697 * 26 24 23 28 28 C 1.54950 * 100.98944 * 34.03681 * 27 26 24 29 29 O 1.43226 * 109.83745 * 66.58563 * 24 23 22 30 30 H 0.96997 * 119.99572 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.32084 * 300.87573 * 10 9 7 32 32 H 1.08996 * 110.31620 * 63.06286 * 10 9 7 33 33 H 1.09000 * 113.09240 * 191.50360 * 13 11 10 34 34 H 1.08998 * 111.63785 * 64.06882 * 13 11 10 35 35 H 1.09000 * 110.31145 * 46.82724 * 16 14 9 36 36 H 1.09000 * 110.31494 * 169.01499 * 16 14 9 37 37 H 1.09002 * 109.47447 * 299.99622 * 20 18 17 38 38 H 1.09001 * 109.47443 * 59.99564 * 20 18 17 39 39 H 1.08996 * 109.47349 * 299.99968 * 21 20 18 40 40 H 1.09002 * 109.47236 * 60.00262 * 21 20 18 41 41 H 1.09000 * 109.46906 * 299.99984 * 23 22 21 42 42 H 1.08991 * 109.47270 * 60.00581 * 23 22 21 43 43 H 1.08998 * 110.85009 * 337.31053 * 26 24 23 44 44 H 1.08991 * 110.85149 * 100.93657 * 26 24 23 45 45 H 1.09006 * 111.06312 * 276.12113 * 27 26 24 46 46 H 1.08996 * 111.14680 * 151.99118 * 27 26 24 47 47 H 1.09004 * 110.30469 * 204.68529 * 28 27 26 48 48 H 1.09006 * 110.39018 * 82.56673 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 -0.1423 -2.5668 0.0015 11 6 -0.3639 -4.1103 0.0547 12 1 -1.3414 -4.4452 0.4018 13 6 0.8837 -4.5248 0.9144 14 6 1.9101 -3.7617 0.0028 15 1 2.9604 -3.8366 0.2846 16 6 1.5281 -4.3384 -1.3956 17 7 0.0515 -4.5841 -1.2986 18 6 -0.7410 -5.1201 -2.2479 19 8 -1.9278 -5.2588 -2.0398 20 6 -0.1523 -5.5482 -3.5675 21 6 -1.2578 -6.1196 -4.4577 22 8 -0.6997 -6.5250 -5.7092 23 6 -1.6534 -7.0755 -6.6199 24 6 -0.9483 -7.4731 -7.9182 25 1 -0.3994 -6.6199 -8.3169 26 6 -1.9882 -7.9562 -8.9520 27 6 -1.2526 -9.1494 -9.6241 28 6 -0.4454 -9.7111 -8.4266 29 8 -0.0466 -8.5576 -7.6691 30 1 -0.4849 0.8401 0.0004 31 1 -0.5817 -2.0909 0.8782 32 1 -0.5737 -2.1538 -0.9103 33 1 1.0576 -5.6008 0.9244 34 1 0.8343 -4.1092 1.9209 35 1 1.7443 -3.6100 -2.1772 36 1 2.0679 -5.2667 -1.5825 37 1 0.3021 -4.6879 -4.0589 38 1 0.6067 -6.3116 -3.3962 39 1 -1.7118 -6.9800 -3.9662 40 1 -2.0170 -5.3565 -4.6291 41 1 -2.1158 -7.9559 -6.1735 42 1 -2.4207 -6.3321 -6.8357 43 1 -2.8998 -8.2916 -8.4576 44 1 -2.2052 -7.1736 -9.6788 45 1 -0.5895 -8.8042 -10.4174 46 1 -1.9616 -9.8869 -10.0003 47 1 0.4316 -10.2521 -8.7820 48 1 -1.0719 -10.3646 -7.8193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692369113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:48 Heat of formation + Delta-G solvation = -71.839219 kcal Electronic energy + Delta-G solvation = -27667.562556 eV Core-core repulsion = 23724.334213 eV Total energy + Delta-G solvation = -3943.228343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.00351 -39.83124 -38.20962 -37.31194 -33.56253 -32.59567 -32.15918 -31.35044 -30.19417 -28.91026 -28.50871 -25.74228 -25.20359 -24.05443 -22.89718 -22.08981 -21.42957 -20.29509 -19.77644 -18.39122 -17.53429 -17.30063 -16.59186 -16.35214 -16.10408 -15.96745 -15.43831 -15.05000 -14.90689 -14.40688 -14.07803 -13.88458 -13.75714 -13.35085 -13.24318 -12.75311 -12.55243 -12.19321 -12.12691 -11.87741 -11.67699 -11.65107 -11.60485 -11.33521 -11.30309 -11.19908 -11.14759 -10.99203 -10.87097 -10.78136 -10.57843 -10.25089 -10.05697 -9.77074 -9.64393 -9.63073 -9.43803 -8.71546 -8.00568 -6.93198 -5.77153 -3.11723 3.04611 3.11947 3.37030 3.42139 3.45174 3.49016 3.77577 4.06628 4.41674 4.42633 4.53694 4.78068 4.82373 4.88971 4.98191 5.06821 5.13109 5.18613 5.21430 5.22938 5.28514 5.31790 5.36831 5.40793 5.44491 5.55619 5.56842 5.60530 5.64068 5.77447 5.78987 5.86910 5.92541 5.98609 6.20294 6.28170 6.40450 6.50471 6.60218 6.69055 6.73923 7.15148 7.42411 7.48713 7.71931 8.06968 8.10659 8.58964 9.09966 9.70810 10.39974 11.35017 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.002253 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.283439 B =12427.162505 C =12974.265637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.598 5.598 10 C 0.174 3.826 11 C 0.099 3.901 12 H 0.113 0.887 13 C -0.150 4.150 14 C 0.139 3.861 15 H 0.105 0.895 16 C 0.084 3.916 17 N -0.608 5.608 18 C 0.532 3.468 19 O -0.562 6.562 20 C -0.133 4.133 21 C 0.080 3.920 22 O -0.382 6.382 23 C 0.055 3.945 24 C 0.083 3.917 25 H 0.089 0.911 26 C -0.150 4.150 27 C -0.156 4.156 28 C 0.046 3.954 29 O -0.367 6.367 30 H 0.253 0.747 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 -18.150 -14.476 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.323 5.323 10 C 0.049 3.951 11 C -0.004 4.004 12 H 0.131 0.869 13 C -0.189 4.189 14 C 0.030 3.970 15 H 0.123 0.877 16 C -0.040 4.040 17 N -0.342 5.342 18 C 0.320 3.680 19 O -0.442 6.442 20 C -0.172 4.172 21 C 0.004 3.996 22 O -0.301 6.301 23 C -0.022 4.022 24 C 0.025 3.975 25 H 0.107 0.893 26 C -0.187 4.187 27 C -0.194 4.194 28 C -0.031 4.031 29 O -0.286 6.286 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.049 -17.922 -14.336 23.042 hybrid contribution -0.077 0.963 -0.193 0.986 sum -2.126 -16.959 -14.529 22.433 Atomic orbital electron populations 1.69934 1.04951 1.25185 1.56544 1.24835 0.95704 0.97761 1.02105 0.86034 0.78680 0.83705 0.77232 1.20446 1.21797 1.21758 1.19096 0.90439 0.82059 1.44233 0.90069 1.45258 1.01365 0.99322 1.86339 1.21927 0.84697 0.87189 1.01288 1.24336 0.97679 0.97647 0.80702 0.86881 1.24128 0.96685 0.98931 0.99177 1.23177 0.96600 0.86336 0.90897 0.87678 1.23698 0.79205 0.99108 1.02008 1.49738 1.09599 1.59590 1.15257 1.19886 0.85997 0.77363 0.84731 1.90660 1.15458 1.57344 1.80772 1.21396 0.99487 1.03144 0.93223 1.22122 0.95107 0.98880 0.83536 1.87861 1.34771 1.81690 1.25805 1.22883 0.91603 0.97529 0.90224 1.22779 0.90629 0.90993 0.93125 0.89272 1.23145 0.98735 0.98782 0.98056 1.23297 0.99631 0.97815 0.98619 1.23416 0.99027 0.89247 0.91404 1.88560 1.51115 1.20890 1.68043 0.93648 0.92653 0.93495 0.91538 0.89835 0.90682 0.92320 0.88280 0.88504 0.92654 0.92524 0.92968 0.92269 0.90155 0.89474 0.90177 0.89797 0.89679 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.56 55.49 0.59 -26.28 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.12 10.37 -15.06 -0.16 -6.27 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.37 3.01 -156.36 -0.47 -14.84 16 10 C 0.17 4.20 4.76 -1.68 -0.01 4.19 16 11 C 0.10 1.93 5.24 -62.55 -0.33 1.60 16 12 H 0.11 2.16 8.05 -51.93 -0.42 1.74 16 13 C -0.15 -2.54 6.82 -22.31 -0.15 -2.69 16 14 C 0.14 2.56 5.46 -62.56 -0.34 2.21 16 15 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 16 C 0.08 1.44 6.18 -0.47 0.00 1.43 16 17 N -0.61 -11.33 2.99 -155.04 -0.46 -11.80 16 18 C 0.53 9.83 7.90 -10.98 -0.09 9.74 16 19 O -0.56 -11.97 16.33 5.55 0.09 -11.88 16 20 C -0.13 -1.98 5.36 -27.88 -0.15 -2.12 16 21 C 0.08 1.15 5.23 37.16 0.19 1.34 16 22 O -0.38 -5.35 10.33 -37.67 -0.39 -5.74 16 23 C 0.05 0.59 5.47 37.16 0.20 0.79 16 24 C 0.08 0.80 3.81 -26.00 -0.10 0.70 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 26 C -0.15 -0.95 6.56 -24.70 -0.16 -1.11 16 27 C -0.16 -0.88 7.16 -24.40 -0.17 -1.05 16 28 C 0.05 0.35 7.78 38.19 0.30 0.65 16 29 O -0.37 -4.24 11.00 -37.67 -0.41 -4.65 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.06 1.47 7.46 -51.93 -0.39 1.08 16 32 H 0.05 1.31 7.68 -51.93 -0.40 0.91 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.45 7.85 -51.93 -0.41 0.05 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -33.12 384.18 -9.70 -42.81 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.34 Total: 0.75 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.06 Total: 9.11 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.35 Total: -52.92 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.71 Total: -22.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.12 -9.70 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692369113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.028 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds