Wall clock time and date at job start Tue Mar 31 2020 13:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99971 * 2 1 4 4 H 1.48506 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47217 * 299.99633 * 3 2 1 6 6 H 1.48496 * 109.47425 * 60.00116 * 3 2 1 7 7 C 1.38815 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99476 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.47866 * 126.94702 * 0.04001 * 9 7 2 11 11 C 1.56022 * 105.10539 * 181.96671 * 10 9 7 12 12 H 1.09002 * 116.24638 * 159.68399 * 11 10 9 13 13 C 1.57086 * 99.60690 * 32.80857 * 11 10 9 14 14 C 1.49295 * 126.94313 * 180.02562 * 9 7 2 15 15 H 1.09002 * 116.15127 * 16.73602 * 14 9 7 16 16 C 1.56018 * 104.09183 * 247.59189 * 14 9 7 17 17 N 1.49285 * 104.09427 * 288.76876 * 11 10 9 18 18 C 1.34782 * 126.94685 * 246.70186 * 17 11 10 19 19 O 1.21284 * 119.99719 * 359.97438 * 18 17 11 20 20 C 1.50697 * 120.00063 * 180.02562 * 18 17 11 21 21 C 1.53003 * 109.46968 * 179.97438 * 20 18 17 22 22 O 1.42902 * 109.47016 * 179.97438 * 21 20 18 23 23 C 1.42899 * 113.99953 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.46893 * 180.02562 * 23 22 21 25 25 H 1.09007 * 109.81879 * 305.69456 * 24 23 22 26 26 C 1.54387 * 109.82635 * 184.81824 * 24 23 22 27 27 C 1.55452 * 102.18100 * 219.17697 * 26 24 23 28 28 C 1.54950 * 100.98944 * 34.03681 * 27 26 24 29 29 O 1.43226 * 109.83745 * 66.58563 * 24 23 22 30 30 H 0.96997 * 119.99572 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.32084 * 300.87573 * 10 9 7 32 32 H 1.08996 * 110.31620 * 63.06286 * 10 9 7 33 33 H 1.09000 * 113.09240 * 191.50360 * 13 11 10 34 34 H 1.08998 * 111.63785 * 64.06882 * 13 11 10 35 35 H 1.09000 * 110.31145 * 46.82724 * 16 14 9 36 36 H 1.09000 * 110.31494 * 169.01499 * 16 14 9 37 37 H 1.09002 * 109.47447 * 299.99622 * 20 18 17 38 38 H 1.09001 * 109.47443 * 59.99564 * 20 18 17 39 39 H 1.08996 * 109.47349 * 299.99968 * 21 20 18 40 40 H 1.09002 * 109.47236 * 60.00262 * 21 20 18 41 41 H 1.09000 * 109.46906 * 299.99984 * 23 22 21 42 42 H 1.08991 * 109.47270 * 60.00581 * 23 22 21 43 43 H 1.08998 * 110.85009 * 337.31053 * 26 24 23 44 44 H 1.08991 * 110.85149 * 100.93657 * 26 24 23 45 45 H 1.09006 * 111.06312 * 276.12113 * 27 26 24 46 46 H 1.08996 * 111.14680 * 151.99118 * 27 26 24 47 47 H 1.09004 * 110.30469 * 204.68529 * 28 27 26 48 48 H 1.09006 * 110.39018 * 82.56673 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 -0.1423 -2.5668 0.0015 11 6 -0.3639 -4.1103 0.0547 12 1 -1.3414 -4.4452 0.4018 13 6 0.8837 -4.5248 0.9144 14 6 1.9101 -3.7617 0.0028 15 1 2.9604 -3.8366 0.2846 16 6 1.5281 -4.3384 -1.3956 17 7 0.0515 -4.5841 -1.2986 18 6 -0.7410 -5.1201 -2.2479 19 8 -1.9278 -5.2588 -2.0398 20 6 -0.1523 -5.5482 -3.5675 21 6 -1.2578 -6.1196 -4.4577 22 8 -0.6997 -6.5250 -5.7092 23 6 -1.6534 -7.0755 -6.6199 24 6 -0.9483 -7.4731 -7.9182 25 1 -0.3994 -6.6199 -8.3169 26 6 -1.9882 -7.9562 -8.9520 27 6 -1.2526 -9.1494 -9.6241 28 6 -0.4454 -9.7111 -8.4266 29 8 -0.0466 -8.5576 -7.6691 30 1 -0.4849 0.8401 0.0004 31 1 -0.5817 -2.0909 0.8782 32 1 -0.5737 -2.1538 -0.9103 33 1 1.0576 -5.6008 0.9244 34 1 0.8343 -4.1092 1.9209 35 1 1.7443 -3.6100 -2.1772 36 1 2.0679 -5.2667 -1.5825 37 1 0.3021 -4.6879 -4.0589 38 1 0.6067 -6.3116 -3.3962 39 1 -1.7118 -6.9800 -3.9662 40 1 -2.0170 -5.3565 -4.6291 41 1 -2.1158 -7.9559 -6.1735 42 1 -2.4207 -6.3321 -6.8357 43 1 -2.8998 -8.2916 -8.4576 44 1 -2.2052 -7.1736 -9.6788 45 1 -0.5895 -8.8042 -10.4174 46 1 -1.9616 -9.8869 -10.0003 47 1 0.4316 -10.2521 -8.7820 48 1 -1.0719 -10.3646 -7.8193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692369113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:47 Heat of formation + Delta-G solvation = -93.547075 kcal Electronic energy + Delta-G solvation = -27668.503879 eV Core-core repulsion = 23724.334213 eV Total energy + Delta-G solvation = -3944.169667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51751 -40.55546 -39.61923 -38.45987 -35.41065 -33.64225 -33.17699 -32.70192 -31.22832 -30.43384 -30.20551 -26.98031 -26.52344 -25.51391 -24.35910 -22.62338 -22.21665 -21.76423 -21.37269 -19.98764 -18.92893 -18.24354 -18.04651 -17.42543 -17.27217 -17.07104 -16.86676 -16.20320 -16.08688 -15.90240 -15.57186 -15.01919 -14.85334 -14.70505 -14.31976 -13.84765 -13.72203 -13.62342 -13.46362 -13.30843 -13.08985 -12.81206 -12.75121 -12.66994 -12.45656 -12.37090 -12.30083 -12.20432 -12.11233 -12.06482 -11.99173 -11.87668 -11.71302 -11.52456 -11.00387 -10.72549 -10.67148 -10.48491 -9.56576 -8.91326 -7.84673 -5.20340 1.46952 1.47354 1.57541 1.59110 1.82489 2.48504 2.60317 2.93769 3.33411 3.38063 3.55267 3.60305 3.77598 3.81500 3.92167 3.94905 3.97145 4.03620 4.12465 4.16345 4.21823 4.27161 4.38499 4.42626 4.46716 4.60182 4.61696 4.67817 4.77866 4.78317 4.81209 4.83236 4.89971 4.94591 4.96327 5.02547 5.03757 5.14977 5.24893 5.25421 5.45407 5.52640 5.65509 6.02862 6.10085 6.20888 6.61488 7.03100 7.11548 7.71029 8.41572 9.26762 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.002253 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.283439 B =12427.162505 C =12974.265637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.075 4.075 3 Si 0.977 3.023 4 H -0.258 1.258 5 H -0.300 1.300 6 H -0.297 1.297 7 C -0.227 4.227 8 H 0.097 0.903 9 N -0.618 5.618 10 C 0.187 3.813 11 C 0.101 3.899 12 H 0.114 0.886 13 C -0.126 4.126 14 C 0.133 3.867 15 H 0.135 0.865 16 C 0.091 3.909 17 N -0.612 5.612 18 C 0.527 3.473 19 O -0.596 6.596 20 C -0.122 4.122 21 C 0.087 3.913 22 O -0.397 6.397 23 C 0.047 3.953 24 C 0.078 3.922 25 H 0.082 0.918 26 C -0.144 4.144 27 C -0.149 4.149 28 C 0.035 3.965 29 O -0.401 6.401 30 H 0.243 0.757 31 H 0.017 0.983 32 H -0.005 1.005 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 -20.483 -15.477 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.267 4.267 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.228 1.228 6 H -0.225 1.225 7 C -0.355 4.355 8 H 0.115 0.885 9 N -0.343 5.343 10 C 0.061 3.939 11 C -0.002 4.002 12 H 0.132 0.868 13 C -0.166 4.166 14 C 0.027 3.973 15 H 0.153 0.847 16 C -0.032 4.032 17 N -0.345 5.345 18 C 0.317 3.683 19 O -0.478 6.478 20 C -0.161 4.161 21 C 0.010 3.990 22 O -0.316 6.316 23 C -0.029 4.029 24 C 0.020 3.980 25 H 0.099 0.901 26 C -0.182 4.182 27 C -0.186 4.186 28 C -0.040 4.040 29 O -0.321 6.321 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.014 0.986 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.102 0.898 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.159 -20.308 -15.351 25.457 hybrid contribution -0.638 1.619 0.095 1.742 sum -0.796 -18.689 -15.256 24.138 Atomic orbital electron populations 1.70175 1.06625 1.25024 1.58980 1.25687 0.96437 1.01263 1.03321 0.85008 0.78580 0.79580 0.76168 1.18140 1.22814 1.22457 1.19588 0.91304 0.83088 1.41562 0.88543 1.45524 1.01465 1.01168 1.86129 1.21522 0.85024 0.90275 0.97086 1.24162 0.99339 0.94121 0.82564 0.86850 1.24032 0.93635 1.00926 0.97962 1.23613 0.98336 0.83229 0.92165 0.84697 1.23650 0.78375 1.00896 1.00270 1.49832 1.10526 1.59284 1.14896 1.20514 0.85568 0.76683 0.85548 1.90640 1.17025 1.58727 1.81451 1.21332 0.99890 1.03812 0.91079 1.21972 0.94615 0.98481 0.83934 1.87836 1.36011 1.81930 1.25851 1.23142 0.91691 0.97881 0.90229 1.22874 0.91280 0.90652 0.93159 0.90055 1.23164 0.98070 0.99467 0.97471 1.23296 0.99710 0.97792 0.97792 1.23637 0.99909 0.88429 0.92072 1.88515 1.52197 1.22234 1.69109 0.94776 0.96451 0.98632 0.87650 0.90214 0.92505 0.87414 0.88062 0.86093 0.92751 0.93614 0.92664 0.90978 0.89335 0.88002 0.89766 0.87721 0.88883 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.87 10.56 21.65 0.23 -58.64 16 2 C -0.07 -4.22 5.49 84.86 0.47 -3.75 16 3 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 7 C -0.23 -12.00 10.37 84.04 0.87 -11.13 16 8 H 0.10 4.71 7.83 -2.91 -0.02 4.68 16 9 N -0.62 -29.65 3.01 -648.59 -1.95 -31.60 16 10 C 0.19 9.40 4.76 87.17 0.42 9.81 16 11 C 0.10 3.94 5.24 46.93 0.25 4.18 16 12 H 0.11 4.38 8.05 -2.39 -0.02 4.36 16 13 C -0.13 -3.93 6.82 33.46 0.23 -3.70 16 14 C 0.13 4.52 5.46 46.92 0.26 4.78 16 15 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 16 C 0.09 2.84 6.18 86.74 0.54 3.38 16 17 N -0.61 -22.05 2.99 -762.80 -2.28 -24.33 16 18 C 0.53 19.08 7.90 87.66 0.69 19.77 16 19 O -0.60 -25.56 16.33 -3.04 -0.05 -25.61 16 20 C -0.12 -3.44 5.36 29.85 0.16 -3.28 16 21 C 0.09 2.44 5.23 71.98 0.38 2.81 16 22 O -0.40 -10.79 10.33 -146.64 -1.51 -12.30 16 23 C 0.05 0.98 5.47 71.98 0.39 1.37 16 24 C 0.08 1.43 3.81 31.07 0.12 1.55 16 25 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 26 C -0.14 -1.53 6.56 31.91 0.21 -1.32 16 27 C -0.15 -1.33 7.16 32.10 0.23 -1.10 16 28 C 0.04 0.49 7.78 72.65 0.57 1.05 16 29 O -0.40 -8.93 11.00 -146.64 -1.61 -10.54 16 30 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.02 0.98 7.46 -2.39 -0.02 0.97 16 32 H 0.00 -0.27 7.68 -2.39 -0.02 -0.29 16 33 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.11 2.39 8.14 -2.39 -0.02 2.38 16 37 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 40 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 0.80 7.85 -2.39 -0.02 0.78 16 44 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -75.84 384.18 1.54 -74.30 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.92 Total: 16.77 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 5.77 Total: 24.43 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.00 Total: -114.57 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -3.18 Total: -48.45 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -75.84 1.54 -74.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692369113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.244 kcal (2) G-P(sol) polarization free energy of solvation -75.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds