Wall clock time and date at job start Tue Mar 31 2020 13:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.43391 * 307.53554 * 11 10 9 13 13 C 1.54892 * 110.48790 * 70.22392 * 11 10 9 14 14 C 1.54892 * 102.74537 * 156.62129 * 13 11 10 15 15 C 1.54264 * 104.19740 * 322.05738 * 14 13 11 16 16 C 1.53873 * 106.59940 * 23.61232 * 15 14 13 17 17 H 1.09001 * 110.03304 * 240.71932 * 16 15 14 18 18 N 1.46502 * 110.03282 * 119.28460 * 16 15 14 19 19 C 1.34774 * 119.99964 * 87.83174 * 18 16 15 20 20 O 1.21603 * 119.99857 * 0.02562 * 19 18 16 21 21 C 1.47420 * 119.99901 * 180.02562 * 19 18 16 22 22 C 1.41292 * 126.41652 * 359.68945 * 21 19 18 23 23 N 1.30454 * 108.02468 * 179.88115 * 22 21 19 24 24 N 1.39939 * 108.89504 * 0.38212 * 23 22 21 25 25 C 1.46496 * 125.75083 * 179.77545 * 24 23 22 26 26 C 1.52998 * 109.47233 * 304.97288 * 25 24 23 27 27 F 1.39906 * 109.47032 * 180.02562 * 26 25 24 28 28 C 1.34256 * 108.48968 * 359.75367 * 24 23 22 29 29 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 32 32 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 33 33 H 1.09004 * 110.75596 * 274.93646 * 13 11 10 34 34 H 1.08992 * 110.75389 * 38.30384 * 13 11 10 35 35 H 1.09000 * 110.48214 * 203.38065 * 14 13 11 36 36 H 1.09000 * 110.48593 * 80.74090 * 14 13 11 37 37 H 1.09001 * 110.02914 * 264.32888 * 15 14 13 38 38 H 1.08992 * 110.03108 * 142.89691 * 15 14 13 39 39 H 0.97002 * 119.99686 * 267.83435 * 18 16 15 40 40 H 1.07995 * 125.98504 * 0.02562 * 22 21 19 41 41 H 1.09000 * 109.47420 * 64.97760 * 25 24 23 42 42 H 1.09003 * 109.46933 * 184.97576 * 25 24 23 43 43 H 1.08990 * 109.47542 * 300.00064 * 26 25 24 44 44 H 1.08996 * 109.46853 * 60.00646 * 26 25 24 45 45 H 1.08001 * 126.28791 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 1 0.3428 -4.7047 0.8096 13 6 0.3385 -4.9124 -1.3658 14 6 -0.1121 -6.3936 -1.4136 15 6 1.0592 -7.1663 -0.7729 16 6 1.8067 -6.1657 0.1259 17 1 2.8368 -6.0565 -0.2132 18 7 1.7815 -6.6246 1.5169 19 6 2.7406 -7.4564 1.9696 20 8 3.6270 -7.8255 1.2234 21 6 2.7149 -7.9186 3.3692 22 6 1.7581 -7.5724 4.3495 23 7 2.0763 -8.1831 5.4575 24 7 3.2396 -8.9312 5.2447 25 6 3.9219 -9.7558 6.2450 26 6 4.2460 -8.9035 7.4735 27 9 4.8981 -9.6909 8.4285 28 6 3.6246 -8.7661 3.9692 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3881 0.0005 31 1 2.6845 -3.7147 -0.8894 32 1 2.6845 -3.7147 0.8905 33 1 -0.5232 -4.2454 -1.3918 34 1 1.0247 -4.6908 -2.1831 35 1 -0.2616 -6.7137 -2.4448 36 1 -1.0243 -6.5337 -0.8336 37 1 1.7266 -7.5427 -1.5481 38 1 0.6778 -7.9933 -0.1741 39 1 1.0746 -6.3299 2.1122 40 1 0.9106 -6.9187 4.2059 41 1 3.2745 -10.5828 6.5370 42 1 4.8460 -10.1497 5.8220 43 1 4.8933 -8.0767 7.1816 44 1 3.3219 -8.5097 7.8965 45 1 4.4877 -9.2137 3.4990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699024976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:58 Heat of formation + Delta-G solvation = -11.266354 kcal Electronic energy + Delta-G solvation = -26712.544452 eV Core-core repulsion = 22680.775192 eV Total energy + Delta-G solvation = -4031.769261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.27425 -41.72270 -39.65744 -37.76112 -34.72663 -34.43818 -33.40921 -31.37551 -30.82238 -29.71297 -28.55451 -27.38106 -24.63806 -24.23485 -23.10504 -22.02093 -21.18746 -20.71944 -19.93014 -19.56663 -18.23263 -17.15669 -16.99664 -16.57833 -16.35637 -16.01608 -15.56467 -15.19822 -14.99939 -14.59535 -14.42762 -14.35466 -14.06540 -13.63582 -13.45854 -13.26708 -13.17680 -13.08298 -12.79316 -12.13122 -12.06815 -11.69757 -11.64803 -11.34564 -11.21687 -10.91256 -10.80726 -10.73767 -10.43241 -10.34527 -10.29526 -10.00028 -9.99066 -9.82773 -9.67119 -9.12952 -8.84284 -8.80239 -6.89060 -5.74470 -3.02372 1.20597 1.78910 1.90478 3.28879 3.41955 3.45878 3.50102 3.51191 3.63082 3.96390 4.29467 4.36120 4.42305 4.55702 4.58684 4.74235 4.75649 4.88257 4.93243 5.05559 5.08672 5.21064 5.42713 5.50228 5.59082 5.67160 5.71557 5.83083 5.85874 5.96868 6.04640 6.09577 6.23832 6.26747 6.33791 6.35900 6.56149 6.59065 6.65771 6.82231 6.95158 7.13530 7.62716 7.72383 8.33274 8.44900 9.56061 10.14157 10.49309 11.48475 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.002558 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.812399 B =10941.498976 C =12688.612225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.079 0.921 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.148 3.852 17 H 0.094 0.906 18 N -0.714 5.714 19 C 0.594 3.406 20 O -0.552 6.552 21 C -0.286 4.286 22 C 0.089 3.911 23 N -0.297 5.297 24 N -0.367 5.367 25 C 0.103 3.897 26 C 0.052 3.948 27 F -0.207 7.207 28 C 0.130 3.870 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.021 0.979 32 H 0.018 0.982 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.398 0.602 40 H 0.193 0.807 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 -22.773 9.720 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.098 0.902 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.112 0.888 18 N -0.364 5.364 19 C 0.381 3.619 20 O -0.431 6.431 21 C -0.301 4.301 22 C -0.099 4.099 23 N -0.117 5.117 24 N -0.147 5.147 25 C -0.019 4.019 26 C -0.004 4.004 27 F -0.188 7.188 28 C -0.020 4.020 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.233 0.767 40 H 0.210 0.790 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.162 -23.212 10.541 25.831 hybrid contribution 0.067 1.213 -0.455 1.297 sum 4.229 -21.999 10.086 24.568 Atomic orbital electron populations 1.69644 1.05066 1.25689 1.57965 1.24718 0.95521 0.97619 1.03170 0.86274 0.78521 0.83594 0.77853 1.21298 1.21718 1.21324 1.19188 0.90998 0.84227 1.42450 0.91339 1.42316 1.05797 0.99868 1.89474 1.20686 0.92940 0.85169 0.97875 1.22432 0.97900 0.93247 0.98533 0.90248 1.22455 1.00491 0.95218 0.96690 1.22389 0.97630 0.95983 1.00280 1.22543 0.97506 0.97951 0.98966 1.21694 1.01164 0.92847 0.79929 0.88839 1.45939 1.28811 1.48520 1.13106 1.17183 0.81307 0.78126 0.85262 1.90766 1.36511 1.57990 1.57855 1.20351 1.02109 1.11038 0.96570 1.24171 0.98848 0.97428 0.89477 1.77180 0.99724 1.11220 1.23537 1.48258 1.20597 1.37249 1.08568 1.22306 0.98363 0.92931 0.88304 1.22166 0.99064 0.92596 0.86537 1.92808 1.83447 1.76931 1.65629 1.23004 0.98780 0.96006 0.84223 0.93527 0.78285 0.96152 0.96440 0.90754 0.91070 0.91891 0.91869 0.91388 0.91735 0.76698 0.78997 0.88083 0.87024 0.89830 0.88885 0.79336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.24 5.49 -59.90 -0.33 -18.57 16 10 C 0.16 3.22 5.54 -4.04 -0.02 3.19 16 11 C -0.10 -1.56 2.59 -88.96 -0.23 -1.79 16 12 H 0.08 1.20 7.74 -51.93 -0.40 0.80 16 13 C -0.11 -1.62 6.19 -24.74 -0.15 -1.77 16 14 C -0.13 -1.47 6.83 -25.07 -0.17 -1.64 16 15 C -0.13 -1.58 6.59 -25.61 -0.17 -1.75 16 16 C 0.15 2.02 2.82 -66.81 -0.19 1.84 16 17 H 0.09 1.47 7.26 -51.93 -0.38 1.09 16 18 N -0.71 -8.64 4.97 -53.80 -0.27 -8.91 16 19 C 0.59 7.86 7.81 -12.52 -0.10 7.76 16 20 O -0.55 -9.10 16.55 5.27 0.09 -9.01 16 21 C -0.29 -3.08 6.13 -105.07 -0.64 -3.72 16 22 C 0.09 0.85 11.50 -16.98 -0.20 0.65 16 23 N -0.30 -2.96 12.33 30.86 0.38 -2.58 16 24 N -0.37 -2.97 3.65 -60.81 -0.22 -3.19 16 25 C 0.10 0.50 6.94 -4.05 -0.03 0.47 16 26 C 0.05 0.29 7.73 37.16 0.29 0.58 16 27 F -0.21 -1.51 17.36 2.25 0.04 -1.47 16 28 C 0.13 1.16 11.25 -16.56 -0.19 0.97 16 29 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.38 9.95 7.64 -40.82 -0.31 9.64 16 31 H 0.02 0.42 8.02 -51.93 -0.42 0.01 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.09 7.96 -51.93 -0.41 0.68 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.75 7.92 -51.93 -0.41 0.34 16 39 H 0.40 3.96 7.31 -40.82 -0.30 3.66 16 40 H 0.19 1.32 7.50 -52.49 -0.39 0.93 16 41 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.11 0.29 8.06 -51.93 -0.42 -0.13 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.19 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -34.59 380.44 -7.71 -42.31 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.79 Total: 8.11 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.04 Total: -2.54 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.29 Total: -60.62 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.59 -7.71 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699024976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.039 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds