Wall clock time and date at job start Tue Mar 31 2020 13:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.43391 * 307.53554 * 11 10 9 13 13 C 1.54892 * 110.48790 * 70.22392 * 11 10 9 14 14 C 1.54892 * 102.74537 * 156.62129 * 13 11 10 15 15 C 1.54264 * 104.19740 * 322.05738 * 14 13 11 16 16 C 1.53873 * 106.59940 * 23.61232 * 15 14 13 17 17 H 1.09001 * 110.03304 * 240.71932 * 16 15 14 18 18 N 1.46502 * 110.03282 * 119.28460 * 16 15 14 19 19 C 1.34774 * 119.99964 * 87.83174 * 18 16 15 20 20 O 1.21603 * 119.99857 * 0.02562 * 19 18 16 21 21 C 1.47420 * 119.99901 * 180.02562 * 19 18 16 22 22 C 1.41292 * 126.41652 * 359.68945 * 21 19 18 23 23 N 1.30454 * 108.02468 * 179.88115 * 22 21 19 24 24 N 1.39939 * 108.89504 * 0.38212 * 23 22 21 25 25 C 1.46496 * 125.75083 * 179.77545 * 24 23 22 26 26 C 1.52998 * 109.47233 * 304.97288 * 25 24 23 27 27 F 1.39906 * 109.47032 * 180.02562 * 26 25 24 28 28 C 1.34256 * 108.48968 * 359.75367 * 24 23 22 29 29 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 32 32 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 33 33 H 1.09004 * 110.75596 * 274.93646 * 13 11 10 34 34 H 1.08992 * 110.75389 * 38.30384 * 13 11 10 35 35 H 1.09000 * 110.48214 * 203.38065 * 14 13 11 36 36 H 1.09000 * 110.48593 * 80.74090 * 14 13 11 37 37 H 1.09001 * 110.02914 * 264.32888 * 15 14 13 38 38 H 1.08992 * 110.03108 * 142.89691 * 15 14 13 39 39 H 0.97002 * 119.99686 * 267.83435 * 18 16 15 40 40 H 1.07995 * 125.98504 * 0.02562 * 22 21 19 41 41 H 1.09000 * 109.47420 * 64.97760 * 25 24 23 42 42 H 1.09003 * 109.46933 * 184.97576 * 25 24 23 43 43 H 1.08990 * 109.47542 * 300.00064 * 26 25 24 44 44 H 1.08996 * 109.46853 * 60.00646 * 26 25 24 45 45 H 1.08001 * 126.28791 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 1 0.3428 -4.7047 0.8096 13 6 0.3385 -4.9124 -1.3658 14 6 -0.1121 -6.3936 -1.4136 15 6 1.0592 -7.1663 -0.7729 16 6 1.8067 -6.1657 0.1259 17 1 2.8368 -6.0565 -0.2132 18 7 1.7815 -6.6246 1.5169 19 6 2.7406 -7.4564 1.9696 20 8 3.6270 -7.8255 1.2234 21 6 2.7149 -7.9186 3.3692 22 6 1.7581 -7.5724 4.3495 23 7 2.0763 -8.1831 5.4575 24 7 3.2396 -8.9312 5.2447 25 6 3.9219 -9.7558 6.2450 26 6 4.2460 -8.9035 7.4735 27 9 4.8981 -9.6909 8.4285 28 6 3.6246 -8.7661 3.9692 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3881 0.0005 31 1 2.6845 -3.7147 -0.8894 32 1 2.6845 -3.7147 0.8905 33 1 -0.5232 -4.2454 -1.3918 34 1 1.0247 -4.6908 -2.1831 35 1 -0.2616 -6.7137 -2.4448 36 1 -1.0243 -6.5337 -0.8336 37 1 1.7266 -7.5427 -1.5481 38 1 0.6778 -7.9933 -0.1741 39 1 1.0746 -6.3299 2.1122 40 1 0.9106 -6.9187 4.2059 41 1 3.2745 -10.5828 6.5370 42 1 4.8460 -10.1497 5.8220 43 1 4.8933 -8.0767 7.1816 44 1 3.3219 -8.5097 7.8965 45 1 4.4877 -9.2137 3.4990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699024976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:57 Heat of formation + Delta-G solvation = -34.291615 kcal Electronic energy + Delta-G solvation = -26713.542903 eV Core-core repulsion = 22680.775192 eV Total energy + Delta-G solvation = -4032.767711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.79451 -42.43323 -40.73184 -38.93667 -36.28517 -35.33071 -34.48756 -33.27063 -31.53979 -30.42907 -30.12598 -28.39477 -26.31800 -24.91592 -24.20954 -23.51254 -21.83976 -21.74496 -21.05805 -20.59825 -19.32631 -18.79156 -17.57447 -17.48267 -17.31123 -16.65030 -16.59608 -16.23839 -16.14827 -15.78620 -15.54242 -15.28794 -15.07998 -15.03164 -14.87165 -14.55603 -14.33156 -13.94926 -13.72384 -13.43329 -13.13596 -12.84938 -12.73154 -12.62852 -12.45843 -12.23661 -12.16805 -11.91882 -11.85053 -11.78680 -11.58413 -11.55431 -11.38234 -10.92856 -10.85685 -10.65716 -10.08774 -9.67157 -8.97926 -7.94118 -5.22089 0.48195 1.12438 1.21907 1.47580 1.50153 1.56353 2.33476 2.48847 2.56846 3.13916 3.38797 3.49839 3.57426 3.73217 3.73771 3.77879 3.95690 3.97268 4.08952 4.16321 4.20284 4.24434 4.45682 4.50778 4.53234 4.59565 4.63824 4.70505 4.73485 4.75802 4.80837 5.03179 5.06806 5.17331 5.25226 5.29738 5.35581 5.37627 5.48482 5.54682 5.70353 5.75746 6.28438 6.43165 6.68062 7.34506 7.35401 8.10740 8.36314 9.28920 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.002558 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.812399 B =10941.498976 C =12688.612225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.162 3.838 11 C -0.091 4.091 12 H 0.085 0.915 13 C -0.111 4.111 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.156 3.844 17 H 0.071 0.929 18 N -0.708 5.708 19 C 0.594 3.406 20 O -0.591 6.591 21 C -0.311 4.311 22 C 0.090 3.910 23 N -0.318 5.318 24 N -0.361 5.361 25 C 0.099 3.901 26 C 0.055 3.945 27 F -0.216 7.216 28 C 0.140 3.860 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.014 0.986 32 H 0.010 0.990 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.410 0.590 40 H 0.212 0.788 41 H 0.112 0.888 42 H 0.140 0.860 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -24.042 10.286 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.036 3.964 11 C -0.110 4.110 12 H 0.104 0.896 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.162 4.162 16 C 0.051 3.949 17 H 0.089 0.911 18 N -0.358 5.358 19 C 0.383 3.617 20 O -0.473 6.473 21 C -0.326 4.326 22 C -0.098 4.098 23 N -0.138 5.138 24 N -0.139 5.139 25 C -0.021 4.021 26 C 0.000 4.000 27 F -0.197 7.197 28 C -0.012 4.012 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.032 0.968 32 H 0.028 0.972 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.247 0.753 40 H 0.228 0.772 41 H 0.130 0.870 42 H 0.158 0.842 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.417 -24.507 11.143 27.282 hybrid contribution 0.058 1.554 -0.581 1.660 sum 4.475 -22.954 10.562 25.660 Atomic orbital electron populations 1.69789 1.06392 1.26144 1.59324 1.25504 0.96418 1.00849 1.03648 0.85258 0.77285 0.79405 0.78097 1.20583 1.21894 1.20552 1.19550 0.91312 0.85585 1.41484 0.91294 1.42463 1.05625 1.00780 1.89284 1.20776 0.93678 0.85066 0.96918 1.22276 0.97004 0.92267 0.99441 0.89630 1.22408 0.99603 0.97295 0.95632 1.22320 0.97834 0.93258 1.01524 1.22472 0.97370 0.97642 0.98672 1.21465 0.99838 0.92405 0.81238 0.91089 1.45844 1.29076 1.48207 1.12692 1.17490 0.80598 0.77597 0.85975 1.90740 1.37946 1.59524 1.59048 1.20241 1.03852 1.12916 0.95609 1.24479 0.99070 0.97306 0.88902 1.77153 1.00770 1.11951 1.23883 1.48467 1.19948 1.36690 1.08829 1.22576 0.99590 0.92453 0.87531 1.22134 0.98710 0.92649 0.86538 1.92790 1.83619 1.77214 1.66101 1.23348 0.98634 0.94864 0.84354 0.93929 0.79078 0.96826 0.97195 0.92095 0.92254 0.90394 0.90431 0.91360 0.90667 0.75342 0.77184 0.87015 0.84246 0.89600 0.89542 0.77296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.25 -14.00 9.99 84.04 0.84 -13.16 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -37.42 5.49 -343.44 -1.89 -39.30 16 10 C 0.16 6.58 5.54 86.38 0.48 7.06 16 11 C -0.09 -2.75 2.59 -9.72 -0.03 -2.78 16 12 H 0.09 2.52 7.74 -2.38 -0.02 2.50 16 13 C -0.11 -3.20 6.19 31.89 0.20 -3.00 16 14 C -0.11 -2.40 6.83 31.67 0.22 -2.18 16 15 C -0.12 -2.77 6.59 31.32 0.21 -2.56 16 16 C 0.16 4.16 2.82 45.72 0.13 4.29 16 17 H 0.07 2.25 7.26 -2.39 -0.02 2.23 16 18 N -0.71 -16.53 4.97 -442.37 -2.20 -18.73 16 19 C 0.59 15.33 7.81 86.66 0.68 16.00 16 20 O -0.59 -19.33 16.55 -4.04 -0.07 -19.40 16 21 C -0.31 -6.33 6.13 -20.15 -0.12 -6.45 16 22 C 0.09 1.60 11.50 85.65 0.99 2.58 16 23 N -0.32 -5.86 12.33 -56.27 -0.69 -6.56 16 24 N -0.36 -5.13 3.65 -346.31 -1.26 -6.39 16 25 C 0.10 0.74 6.94 86.38 0.60 1.34 16 26 C 0.06 0.54 7.73 71.98 0.56 1.09 16 27 F -0.22 -2.86 17.36 44.97 0.78 -2.08 16 28 C 0.14 2.23 11.25 84.28 0.95 3.18 16 29 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.38 19.89 7.64 -92.71 -0.71 19.19 16 31 H 0.01 0.58 8.02 -2.39 -0.02 0.56 16 32 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 1.57 7.92 -2.39 -0.02 1.55 16 39 H 0.41 7.62 7.31 -92.71 -0.68 6.94 16 40 H 0.21 2.58 7.50 -2.91 -0.02 2.56 16 41 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.14 0.29 8.06 -2.39 -0.02 0.27 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -74.24 380.44 2.76 -71.48 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -0.37 Total: 29.17 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 6.15 Total: 1.76 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -5.76 Total: -129.33 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.07 Total: -19.40 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -74.24 2.76 -71.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699024976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.187 kcal (2) G-P(sol) polarization free energy of solvation -74.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds