Wall clock time and date at job start Tue Mar 31 2020 14:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30371 * 125.96661 * 2 1 4 4 N 1.39918 * 109.01967 * 180.27561 * 3 2 1 5 5 C 1.46499 * 125.74437 * 179.71232 * 4 3 2 6 6 C 1.34418 * 108.51362 * 359.73534 * 4 3 2 7 7 F 1.35102 * 126.34527 * 180.02562 * 6 4 3 8 8 C 1.38502 * 107.31155 * 359.97438 * 6 4 3 9 9 C 1.47173 * 126.45854 * 179.97438 * 8 6 4 10 10 O 1.21637 * 119.99662 * 90.02213 * 9 8 6 11 11 N 1.34771 * 120.00251 * 270.02478 * 9 8 6 12 12 C 1.46500 * 120.00255 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.01069 * 326.39355 * 12 11 9 14 14 C 1.54265 * 110.03137 * 87.83220 * 12 11 9 15 15 C 1.54890 * 104.19358 * 142.89670 * 14 12 11 16 16 C 1.54894 * 102.74813 * 322.05537 * 15 14 12 17 17 C 1.53870 * 110.03058 * 205.00241 * 12 11 9 18 18 H 1.09000 * 110.03284 * 121.38487 * 17 12 11 19 19 C 1.52997 * 110.03686 * 359.97438 * 17 12 11 20 20 N 1.46505 * 109.47212 * 175.00000 * 19 17 12 21 21 C 1.36936 * 119.99992 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00176 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00265 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46968 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47299 * 119.99957 * 25 23 21 28 28 H 1.48495 * 109.47075 * 240.00117 * 25 23 21 29 29 H 1.08998 * 109.47572 * 270.15957 * 1 2 3 30 30 H 1.09003 * 109.46852 * 30.15917 * 1 2 3 31 31 H 1.09006 * 109.47310 * 150.15559 * 1 2 3 32 32 H 1.09003 * 109.46718 * 270.02899 * 5 4 3 33 33 H 1.09000 * 109.46933 * 30.02173 * 5 4 3 34 34 H 1.09003 * 109.47068 * 150.02592 * 5 4 3 35 35 H 0.97000 * 119.99697 * 359.97438 * 11 9 8 36 36 H 1.09000 * 110.48786 * 261.57463 * 14 12 11 37 37 H 1.09002 * 110.48255 * 24.08734 * 14 12 11 38 38 H 1.08998 * 110.75426 * 80.37434 * 15 14 12 39 39 H 1.09001 * 110.75430 * 203.55756 * 15 14 12 40 40 H 1.08994 * 110.48714 * 279.26294 * 16 15 14 41 41 H 1.08998 * 110.48108 * 156.61627 * 16 15 14 42 42 H 1.09002 * 109.47153 * 54.99992 * 19 17 12 43 43 H 1.09001 * 109.46832 * 295.00183 * 19 17 12 44 44 H 0.96996 * 119.99606 * 0.02562 * 20 19 17 45 45 H 0.97001 * 120.00803 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6473 -0.0064 5 6 4.7763 1.5353 -0.0144 6 6 3.6479 -0.6963 -0.0044 7 9 4.7576 -1.4670 -0.0085 8 6 2.3374 -1.1445 0.0038 9 6 1.8929 -2.5475 0.0080 10 8 1.7150 -3.1258 1.0632 11 7 1.6830 -3.1914 -1.1572 12 6 1.2411 -4.5882 -1.1529 13 1 1.6739 -5.1138 -0.3017 14 6 -0.2988 -4.6550 -1.0893 15 6 -0.6643 -5.8587 -1.9930 16 6 0.3557 -5.7379 -3.1524 17 6 1.6573 -5.2766 -2.4646 18 1 2.2919 -6.1364 -2.2500 19 6 2.4018 -4.2868 -3.3628 20 7 2.8957 -4.9836 -4.5532 21 6 3.5967 -4.2960 -5.5075 22 1 3.7859 -3.2400 -5.3825 23 6 4.0642 -4.9560 -6.6355 24 7 3.8333 -6.2427 -6.7881 25 14 5.0212 -4.0181 -7.9371 26 1 5.1450 -2.5950 -7.5311 27 1 6.3752 -4.6112 -8.0794 28 1 4.3048 -4.1026 -9.2351 29 1 -0.3634 0.0029 1.0276 30 1 -0.3633 0.8886 -0.5163 31 1 -0.3634 -0.8914 -0.5114 32 1 5.0594 1.7539 -1.0440 33 1 4.5287 2.4642 0.4993 34 1 5.6076 1.0485 0.4956 35 1 1.8246 -2.7301 -1.9986 36 1 -0.6311 -4.8313 -0.0663 37 1 -0.7368 -3.7360 -1.4788 38 1 -0.5308 -6.7985 -1.4573 39 1 -1.6858 -5.7681 -2.3625 40 1 0.0232 -4.9948 -3.8772 41 1 0.5010 -6.7044 -3.6348 42 1 3.2430 -3.8613 -2.8157 43 1 1.7234 -3.4886 -3.6643 44 1 2.7254 -5.9319 -4.6655 45 1 4.1596 -6.7040 -7.5766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699033739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:22 Heat of formation + Delta-G solvation = -14.390471 kcal Electronic energy + Delta-G solvation = -28148.816207 eV Core-core repulsion = 24116.911474 eV Total energy + Delta-G solvation = -4031.904733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.49524 -42.52146 -41.00212 -39.07642 -36.22280 -35.26282 -34.63436 -33.29870 -31.61666 -30.54333 -30.14329 -28.65717 -26.93690 -26.31932 -24.22075 -23.82971 -22.00249 -21.61722 -21.28270 -20.36163 -19.43985 -18.95315 -18.16182 -17.83990 -17.24087 -17.14780 -16.58575 -16.34350 -15.87377 -15.76373 -15.55287 -15.23797 -15.09571 -14.91181 -14.65629 -14.49562 -14.39380 -14.15477 -13.71317 -13.45213 -13.28519 -13.13822 -13.04414 -12.87665 -12.78175 -12.36032 -12.13823 -12.05972 -11.89241 -11.78104 -11.69734 -11.50402 -11.42466 -11.13766 -10.94558 -10.44483 -10.07966 -9.91099 -8.99882 -7.95168 -5.23778 0.18698 0.85038 1.11323 1.38989 1.46742 1.47208 1.56872 2.23114 2.55205 2.72528 3.25621 3.38355 3.48261 3.70006 3.73241 3.87775 3.91829 4.10921 4.20210 4.21247 4.27437 4.42844 4.51116 4.53539 4.55554 4.57385 4.68677 4.73169 4.76336 4.80572 4.87955 4.94586 5.01288 5.12913 5.26955 5.28622 5.30732 5.38863 5.48197 5.53537 5.54930 5.58146 6.21990 6.26731 6.44257 7.11095 7.33862 8.09025 8.32861 9.28475 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.004190 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.804434 B = 6680.908248 C = 8728.554199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.132 3.868 3 N -0.281 5.281 4 N -0.368 5.368 5 C 0.080 3.920 6 C 0.285 3.715 7 F -0.092 7.092 8 C -0.313 4.313 9 C 0.604 3.396 10 O -0.567 6.567 11 N -0.703 5.703 12 C 0.151 3.849 13 H 0.081 0.919 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.109 4.109 17 C -0.100 4.100 18 H 0.071 0.929 19 C 0.160 3.840 20 N -0.740 5.740 21 C -0.243 4.243 22 H 0.074 0.926 23 C -0.072 4.072 24 N -0.967 5.967 25 Si 0.970 3.030 26 H -0.267 1.267 27 H -0.295 1.295 28 H -0.292 1.292 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.409 0.591 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.014 0.986 43 H 0.028 0.972 44 H 0.375 0.625 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 13.799 15.462 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 N -0.104 5.104 4 N -0.153 5.153 5 C -0.058 4.058 6 C 0.136 3.864 7 F -0.071 7.071 8 C -0.329 4.329 9 C 0.389 3.611 10 O -0.446 6.446 11 N -0.355 5.355 12 C 0.046 3.954 13 H 0.099 0.901 14 C -0.161 4.161 15 C -0.150 4.150 16 C -0.147 4.147 17 C -0.120 4.120 18 H 0.090 0.910 19 C 0.034 3.966 20 N -0.383 5.383 21 C -0.375 4.375 22 H 0.092 0.908 23 C -0.264 4.264 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.191 1.191 27 H -0.222 1.222 28 H -0.219 1.219 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.207 0.793 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.565 14.896 16.134 22.919 hybrid contribution 1.529 -1.032 -1.345 2.283 sum -5.036 13.865 14.789 20.888 Atomic orbital electron populations 1.20468 0.83097 1.05146 1.04927 1.22629 0.98485 0.87090 0.95270 1.77263 0.84590 1.21341 1.27206 1.49023 1.08043 1.02305 1.55898 1.22504 0.82639 0.94782 1.05917 1.17931 0.83227 0.82789 1.02451 1.91668 1.49824 1.71804 1.93784 1.19755 0.91172 0.95515 1.26484 1.17162 0.76022 0.84343 0.83623 1.90754 1.53207 1.68377 1.32268 1.46387 1.67231 1.13374 1.08523 1.21675 0.95892 0.80600 0.97218 0.90085 1.22714 0.93011 0.99656 1.00744 1.22439 0.99110 0.98137 0.95305 1.22290 0.93688 1.00977 0.97720 1.22118 0.97790 0.98162 0.93905 0.91025 1.20792 0.94757 0.94194 0.86894 1.42515 1.65557 1.09372 1.20845 1.19626 1.25724 0.93505 0.98674 0.90795 1.25508 1.03254 0.96742 1.00945 1.69813 1.52671 1.09379 1.29926 0.85130 0.77702 0.78184 0.79082 1.19146 1.22208 1.21903 0.88449 0.88133 0.89542 0.88364 0.86286 0.87525 0.75185 0.90575 0.90344 0.90597 0.89690 0.92078 0.92352 0.96799 0.95414 0.79259 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.28 71.24 0.73 -0.50 16 2 C 0.13 3.04 7.26 43.55 0.32 3.36 16 3 N -0.28 -6.53 12.49 -46.64 -0.58 -7.11 16 4 N -0.37 -7.99 3.98 -368.85 -1.47 -9.46 16 5 C 0.08 0.94 11.43 127.77 1.46 2.40 16 6 C 0.28 7.50 8.70 84.36 0.73 8.23 16 7 F -0.09 -2.50 17.31 44.97 0.78 -1.72 16 8 C -0.31 -8.56 5.89 -20.09 -0.12 -8.68 16 9 C 0.60 18.20 7.35 86.59 0.64 18.83 16 10 O -0.57 -20.38 16.76 -4.15 -0.07 -20.44 16 11 N -0.70 -19.60 4.38 -442.61 -1.94 -21.54 16 12 C 0.15 4.16 3.23 45.71 0.15 4.31 16 13 H 0.08 2.42 7.56 -2.39 -0.02 2.41 16 14 C -0.12 -2.74 6.53 31.67 0.21 -2.53 16 15 C -0.11 -2.41 6.91 31.89 0.22 -2.19 16 16 C -0.11 -3.13 6.08 31.67 0.19 -2.94 16 17 C -0.10 -3.17 2.96 -10.07 -0.03 -3.20 16 18 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 19 C 0.16 6.17 4.18 86.38 0.36 6.53 16 20 N -0.74 -36.90 5.45 -343.45 -1.87 -38.77 16 21 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 22 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 23 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 24 N -0.97 -58.67 13.06 21.65 0.28 -58.38 16 25 Si 0.97 45.71 29.55 68.60 2.03 47.73 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.32 8.01 -2.38 -0.02 1.30 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.41 11.27 5.88 -92.71 -0.55 10.73 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.64 8.05 -2.39 -0.02 1.62 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.89 7.76 -2.39 -0.02 1.87 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.01 0.57 7.42 -2.39 -0.02 0.55 16 43 H 0.03 1.04 7.10 -2.39 -0.02 1.02 16 44 H 0.38 19.95 7.55 -92.71 -0.70 19.25 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -71.95 377.49 3.10 -68.85 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.22 Total: 33.43 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 6.17 Total: 7.42 kcal Atomic # 7 Polarization: -129.69 SS G_CDS: -5.58 Total: -135.27 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.07 Total: -20.44 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.95 3.10 -68.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699033739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.459 kcal (2) G-P(sol) polarization free energy of solvation -71.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds