Wall clock time and date at job start Tue Mar 31 2020 14:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30380 * 125.96981 * 2 1 4 4 N 1.39916 * 109.02215 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.73908 * 179.97438 * 4 3 2 6 6 C 1.34404 * 108.51416 * 359.76591 * 4 3 2 7 7 F 1.35107 * 126.34346 * 180.25169 * 6 4 3 8 8 C 1.38498 * 107.31890 * 0.36944 * 6 4 3 9 9 C 1.47165 * 126.46327 * 179.89705 * 8 6 4 10 10 O 1.21637 * 119.99606 * 269.68569 * 9 8 6 11 11 N 1.34776 * 119.99870 * 89.69026 * 9 8 6 12 12 C 1.46501 * 119.99731 * 180.02562 * 11 9 8 13 13 H 1.08997 * 110.01993 * 34.93363 * 12 11 9 14 14 C 1.53876 * 110.03274 * 273.54605 * 12 11 9 15 15 C 1.54267 * 106.59870 * 240.71671 * 14 12 11 16 16 C 1.54891 * 104.19324 * 336.39035 * 15 14 12 17 17 C 1.54261 * 110.03258 * 156.37734 * 12 11 9 18 18 H 1.09001 * 110.48691 * 24.08270 * 17 12 11 19 19 C 1.52994 * 110.48660 * 261.57285 * 17 12 11 20 20 N 1.46506 * 109.47382 * 175.00024 * 19 17 12 21 21 C 1.36933 * 120.00280 * 180.02562 * 20 19 17 22 22 H 1.07995 * 119.99858 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99785 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00393 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99680 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47135 * 90.00149 * 25 23 21 27 27 H 1.48502 * 109.47235 * 210.00029 * 25 23 21 28 28 H 1.48497 * 109.47417 * 330.00239 * 25 23 21 29 29 H 1.09001 * 109.46843 * 269.97587 * 1 2 3 30 30 H 1.08999 * 109.47579 * 29.97178 * 1 2 3 31 31 H 1.08995 * 109.47681 * 149.97673 * 1 2 3 32 32 H 1.09003 * 109.46679 * 89.97488 * 5 4 3 33 33 H 1.08997 * 109.46798 * 209.97414 * 5 4 3 34 34 H 1.08999 * 109.47025 * 329.97414 * 5 4 3 35 35 H 0.96995 * 120.00454 * 0.02562 * 11 9 8 36 36 H 1.08995 * 110.03160 * 359.97438 * 14 12 11 37 37 H 1.08998 * 110.03319 * 121.42949 * 14 12 11 38 38 H 1.09004 * 110.48597 * 95.06674 * 15 14 12 39 39 H 1.08994 * 110.48679 * 217.71200 * 15 14 12 40 40 H 1.09005 * 110.75269 * 279.62515 * 16 15 14 41 41 H 1.09004 * 110.91555 * 156.33330 * 16 15 14 42 42 H 1.09002 * 109.47471 * 294.99772 * 19 17 12 43 43 H 1.08999 * 109.47564 * 54.99923 * 19 17 12 44 44 H 0.96999 * 119.99567 * 359.97438 * 20 19 17 45 45 H 0.97000 * 120.00406 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6473 -0.0006 5 6 4.7763 1.5354 -0.0013 6 6 3.6479 -0.6962 0.0042 7 9 4.7576 -1.4668 0.0101 8 6 2.3374 -1.1445 -0.0006 9 6 1.8930 -2.5474 0.0000 10 8 1.7084 -3.1273 -1.0533 11 7 1.6905 -3.1897 1.1674 12 6 1.2486 -4.5865 1.1680 13 1 1.6947 -5.1193 0.3282 14 6 -0.2861 -4.6538 1.0795 15 6 -0.7701 -5.3711 2.3567 16 6 0.4537 -6.2051 2.8107 17 6 1.6438 -5.2652 2.4957 18 1 1.7640 -4.5214 3.2834 19 6 2.9319 -6.0721 2.3219 20 7 3.3513 -6.6080 3.6193 21 6 4.4866 -7.3681 3.7116 22 1 5.0727 -7.5728 2.8279 23 6 4.8842 -7.8753 4.9411 24 7 4.1703 -7.6254 6.0181 25 14 6.4325 -8.9127 5.0668 26 1 7.5983 -8.0320 5.3327 27 1 6.2860 -9.8884 6.1767 28 1 6.6444 -9.6425 3.7910 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 5.0655 1.7562 1.0262 33 1 5.6046 1.0475 -0.5151 34 1 4.5257 2.4632 -0.5156 35 1 1.8373 -2.7272 2.0073 36 1 -0.7022 -3.6473 1.0366 37 1 -0.5848 -5.2200 0.1973 38 1 -1.0420 -4.6446 3.1224 39 1 -1.6138 -6.0233 2.1314 40 1 0.5273 -7.1278 2.2352 41 1 0.4034 -6.4204 3.8781 42 1 2.7548 -6.8949 1.6292 43 1 3.7150 -5.4257 1.9256 44 1 2.8252 -6.4238 4.4131 45 1 4.4479 -7.9802 6.8772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699033740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:27 Heat of formation + Delta-G solvation = 0.138516 kcal Electronic energy + Delta-G solvation = -27706.334406 eV Core-core repulsion = 23675.059698 eV Total energy + Delta-G solvation = -4031.274709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.51756 -41.65075 -39.71098 -37.79731 -34.49824 -34.44767 -33.43128 -31.37860 -30.75191 -29.84674 -28.56803 -27.63657 -26.20965 -24.47608 -22.91436 -22.02034 -21.09994 -20.69139 -19.97807 -19.64463 -18.11927 -17.24478 -17.14454 -16.69505 -16.40817 -16.22398 -15.07780 -14.96493 -14.82712 -14.49868 -14.13422 -14.00540 -13.91988 -13.64315 -13.54022 -13.39840 -13.15984 -12.94969 -12.80608 -12.72532 -12.44767 -12.08448 -11.72616 -11.33908 -11.19114 -10.92023 -10.81488 -10.76376 -10.43741 -10.34826 -10.28275 -10.00311 -9.92341 -9.67736 -9.65509 -9.00509 -8.93581 -8.84489 -6.89077 -5.74627 -3.02531 1.08866 1.60816 1.97652 2.50794 3.29000 3.44972 3.50337 3.52024 3.56461 4.04586 4.45501 4.56780 4.67165 4.70774 4.76836 4.84323 4.93237 4.95548 5.00857 5.08614 5.28339 5.42433 5.49552 5.50973 5.58793 5.66510 5.70203 5.82228 5.85482 5.95820 6.02662 6.09140 6.22545 6.25178 6.32854 6.37088 6.55861 6.58850 6.62624 6.81976 6.94302 7.05381 7.55516 7.72995 8.24359 8.44615 9.55952 10.13933 10.49180 11.48360 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003296 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.706276 B = 8492.733950 C =10153.733819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.132 3.868 3 N -0.273 5.273 4 N -0.375 5.375 5 C 0.092 3.908 6 C 0.297 3.703 7 F -0.084 7.084 8 C -0.291 4.291 9 C 0.598 3.402 10 O -0.531 6.531 11 N -0.707 5.707 12 C 0.145 3.855 13 H 0.093 0.907 14 C -0.130 4.130 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.102 4.102 18 H 0.079 0.921 19 C 0.160 3.840 20 N -0.730 5.730 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.401 0.599 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.022 0.978 43 H 0.017 0.983 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.880 19.042 -11.206 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 N -0.096 5.096 4 N -0.160 5.160 5 C -0.048 4.048 6 C 0.150 3.850 7 F -0.063 7.063 8 C -0.307 4.307 9 C 0.382 3.618 10 O -0.407 6.407 11 N -0.357 5.357 12 C 0.041 3.959 13 H 0.112 0.888 14 C -0.169 4.169 15 C -0.162 4.162 16 C -0.148 4.148 17 C -0.121 4.121 18 H 0.098 0.902 19 C 0.033 3.967 20 N -0.375 5.375 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.634 19.834 -12.025 24.419 hybrid contribution 1.446 -1.198 0.842 2.058 sum -6.188 18.636 -11.182 22.597 Atomic orbital electron populations 1.20331 0.85178 1.04328 1.03905 1.22185 0.97168 0.87980 0.96097 1.77297 0.84159 1.21203 1.26907 1.48670 1.07298 1.02649 1.57348 1.22090 0.83628 0.94610 1.04492 1.17829 0.83512 0.81827 1.01844 1.91706 1.49550 1.71439 1.93640 1.19723 0.90340 0.95774 1.24835 1.16997 0.76857 0.83867 0.84069 1.90801 1.51184 1.67315 1.31377 1.46192 1.67967 1.13417 1.08141 1.21763 0.94085 0.80478 0.99608 0.88849 1.22539 0.94914 1.00878 0.98564 1.22383 0.98178 0.98834 0.96834 1.22451 0.92550 0.97765 1.02066 1.22425 0.96611 0.97787 0.95265 0.90245 1.20693 0.91829 0.94347 0.89868 1.42322 1.29273 1.61674 1.04186 1.19241 1.00539 1.23353 0.93675 0.91264 1.24715 0.99197 1.01509 0.95605 1.69653 1.39989 1.50195 0.98506 0.86202 0.83100 0.79899 0.77093 1.21804 1.21790 1.20760 0.89461 0.89911 0.89683 0.89658 0.88920 0.88138 0.76398 0.91627 0.91259 0.91841 0.91822 0.91056 0.90736 0.96068 0.96472 0.78283 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.28 36.00 0.37 -0.25 16 2 C 0.13 1.47 7.26 -82.01 -0.60 0.87 16 3 N -0.27 -3.09 12.49 33.91 0.42 -2.66 16 4 N -0.37 -3.93 3.98 -67.94 -0.27 -4.20 16 5 C 0.09 0.54 11.43 59.85 0.68 1.23 16 6 C 0.30 3.69 8.70 -16.33 -0.14 3.55 16 7 F -0.08 -1.09 17.31 2.25 0.04 -1.05 16 8 C -0.29 -3.75 5.89 -104.97 -0.62 -4.36 16 9 C 0.60 8.66 7.34 -12.64 -0.09 8.57 16 10 O -0.53 -9.46 16.79 5.24 0.09 -9.37 16 11 N -0.71 -9.18 4.99 -53.88 -0.27 -9.45 16 12 C 0.15 2.03 2.79 -66.81 -0.19 1.84 16 13 H 0.09 1.49 7.30 -51.93 -0.38 1.11 16 14 C -0.13 -1.56 6.59 -25.61 -0.17 -1.73 16 15 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 16 C -0.11 -1.62 6.19 -24.74 -0.15 -1.78 16 17 C -0.10 -1.59 2.58 -88.97 -0.23 -1.82 16 18 H 0.08 1.24 7.73 -51.93 -0.40 0.84 16 19 C 0.16 3.26 5.54 -4.04 -0.02 3.24 16 20 N -0.73 -18.44 5.49 -59.91 -0.33 -18.77 16 21 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 25 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.69 8.01 -51.93 -0.42 0.28 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.40 4.58 8.32 -40.82 -0.34 4.24 16 36 H 0.06 0.73 7.92 -51.93 -0.41 0.31 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.10 7.97 -51.93 -0.41 0.69 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.02 0.45 8.02 -51.93 -0.42 0.03 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 10.04 7.64 -40.82 -0.31 9.73 16 45 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -34.47 382.35 -7.29 -41.76 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.86 Total: 7.50 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.57 Total: 0.37 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.28 Total: -62.57 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.47 -7.29 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699033740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.898 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds