Wall clock time and date at job start Tue Mar 31 2020 14:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30380 * 125.96981 * 2 1 4 4 N 1.39916 * 109.02215 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.73908 * 179.97438 * 4 3 2 6 6 C 1.34404 * 108.51416 * 359.76591 * 4 3 2 7 7 F 1.35107 * 126.34346 * 180.25169 * 6 4 3 8 8 C 1.38498 * 107.31890 * 0.36944 * 6 4 3 9 9 C 1.47165 * 126.46327 * 179.89705 * 8 6 4 10 10 O 1.21637 * 119.99606 * 269.68569 * 9 8 6 11 11 N 1.34776 * 119.99870 * 89.69026 * 9 8 6 12 12 C 1.46501 * 119.99731 * 180.02562 * 11 9 8 13 13 H 1.08997 * 110.01993 * 34.93363 * 12 11 9 14 14 C 1.53876 * 110.03274 * 273.54605 * 12 11 9 15 15 C 1.54267 * 106.59870 * 240.71671 * 14 12 11 16 16 C 1.54891 * 104.19324 * 336.39035 * 15 14 12 17 17 C 1.54261 * 110.03258 * 156.37734 * 12 11 9 18 18 H 1.09001 * 110.48691 * 24.08270 * 17 12 11 19 19 C 1.52994 * 110.48660 * 261.57285 * 17 12 11 20 20 N 1.46506 * 109.47382 * 175.00024 * 19 17 12 21 21 C 1.36933 * 120.00280 * 180.02562 * 20 19 17 22 22 H 1.07995 * 119.99858 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99785 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00393 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99680 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47135 * 90.00149 * 25 23 21 27 27 H 1.48502 * 109.47235 * 210.00029 * 25 23 21 28 28 H 1.48497 * 109.47417 * 330.00239 * 25 23 21 29 29 H 1.09001 * 109.46843 * 269.97587 * 1 2 3 30 30 H 1.08999 * 109.47579 * 29.97178 * 1 2 3 31 31 H 1.08995 * 109.47681 * 149.97673 * 1 2 3 32 32 H 1.09003 * 109.46679 * 89.97488 * 5 4 3 33 33 H 1.08997 * 109.46798 * 209.97414 * 5 4 3 34 34 H 1.08999 * 109.47025 * 329.97414 * 5 4 3 35 35 H 0.96995 * 120.00454 * 0.02562 * 11 9 8 36 36 H 1.08995 * 110.03160 * 359.97438 * 14 12 11 37 37 H 1.08998 * 110.03319 * 121.42949 * 14 12 11 38 38 H 1.09004 * 110.48597 * 95.06674 * 15 14 12 39 39 H 1.08994 * 110.48679 * 217.71200 * 15 14 12 40 40 H 1.09005 * 110.75269 * 279.62515 * 16 15 14 41 41 H 1.09004 * 110.91555 * 156.33330 * 16 15 14 42 42 H 1.09002 * 109.47471 * 294.99772 * 19 17 12 43 43 H 1.08999 * 109.47564 * 54.99923 * 19 17 12 44 44 H 0.96999 * 119.99567 * 359.97438 * 20 19 17 45 45 H 0.97000 * 120.00406 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6473 -0.0006 5 6 4.7763 1.5354 -0.0013 6 6 3.6479 -0.6962 0.0042 7 9 4.7576 -1.4668 0.0101 8 6 2.3374 -1.1445 -0.0006 9 6 1.8930 -2.5474 0.0000 10 8 1.7084 -3.1273 -1.0533 11 7 1.6905 -3.1897 1.1674 12 6 1.2486 -4.5865 1.1680 13 1 1.6947 -5.1193 0.3282 14 6 -0.2861 -4.6538 1.0795 15 6 -0.7701 -5.3711 2.3567 16 6 0.4537 -6.2051 2.8107 17 6 1.6438 -5.2652 2.4957 18 1 1.7640 -4.5214 3.2834 19 6 2.9319 -6.0721 2.3219 20 7 3.3513 -6.6080 3.6193 21 6 4.4866 -7.3681 3.7116 22 1 5.0727 -7.5728 2.8279 23 6 4.8842 -7.8753 4.9411 24 7 4.1703 -7.6254 6.0181 25 14 6.4325 -8.9127 5.0668 26 1 7.5983 -8.0320 5.3327 27 1 6.2860 -9.8884 6.1767 28 1 6.6444 -9.6425 3.7910 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 5.0655 1.7562 1.0262 33 1 5.6046 1.0475 -0.5151 34 1 4.5257 2.4632 -0.5156 35 1 1.8373 -2.7272 2.0073 36 1 -0.7022 -3.6473 1.0366 37 1 -0.5848 -5.2200 0.1973 38 1 -1.0420 -4.6446 3.1224 39 1 -1.6138 -6.0233 2.1314 40 1 0.5273 -7.1278 2.2352 41 1 0.4034 -6.4204 3.8781 42 1 2.7548 -6.8949 1.6292 43 1 3.7150 -5.4257 1.9256 44 1 2.8252 -6.4238 4.4131 45 1 4.4479 -7.9802 6.8772 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699033740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:26 Heat of formation + Delta-G solvation = -23.349267 kcal Electronic energy + Delta-G solvation = -27707.352913 eV Core-core repulsion = 23675.059698 eV Total energy + Delta-G solvation = -4032.293215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.49547 -42.51774 -40.86876 -39.04509 -36.31664 -35.25624 -34.62096 -33.29337 -31.61331 -30.53567 -30.18061 -28.69219 -26.99595 -26.26139 -24.19258 -23.48584 -22.07410 -21.67881 -21.16991 -20.75659 -19.37480 -18.84267 -18.10057 -17.85943 -17.53093 -17.15852 -16.63504 -16.13506 -15.96679 -15.76815 -15.39977 -15.16069 -15.07173 -14.88812 -14.59863 -14.48552 -14.39900 -14.19668 -13.71711 -13.46327 -13.27998 -13.16469 -13.04042 -12.89512 -12.76104 -12.48295 -12.16557 -12.07541 -11.92248 -11.84982 -11.62000 -11.57850 -11.37648 -11.12809 -10.93113 -10.44437 -10.09386 -9.91301 -9.00321 -7.96019 -5.24326 0.18420 0.84581 1.11718 1.39178 1.46376 1.47557 1.56359 2.22113 2.55006 2.72942 3.26007 3.36932 3.46745 3.69074 3.72528 3.90239 3.94242 4.10564 4.18963 4.21335 4.27585 4.44543 4.50087 4.55868 4.57778 4.61767 4.67764 4.75588 4.76622 4.78864 4.88329 5.00806 5.05018 5.12413 5.21333 5.28958 5.31874 5.36764 5.47090 5.53891 5.57782 5.60875 6.22224 6.26461 6.47110 7.13612 7.33480 8.07974 8.34094 9.27143 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003296 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.706276 B = 8492.733950 C =10153.733819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.133 3.867 3 N -0.281 5.281 4 N -0.368 5.368 5 C 0.080 3.920 6 C 0.285 3.715 7 F -0.093 7.093 8 C -0.311 4.311 9 C 0.603 3.397 10 O -0.570 6.570 11 N -0.697 5.697 12 C 0.151 3.849 13 H 0.071 0.929 14 C -0.122 4.122 15 C -0.110 4.110 16 C -0.111 4.111 17 C -0.091 4.091 18 H 0.083 0.917 19 C 0.161 3.839 20 N -0.738 5.738 21 C -0.249 4.249 22 H 0.069 0.931 23 C -0.070 4.070 24 N -0.965 5.965 25 Si 0.971 3.029 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.273 1.273 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.016 0.984 43 H 0.007 0.993 44 H 0.377 0.623 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 20.373 -11.374 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 N -0.104 5.104 4 N -0.153 5.153 5 C -0.058 4.058 6 C 0.136 3.864 7 F -0.072 7.072 8 C -0.327 4.327 9 C 0.388 3.612 10 O -0.448 6.448 11 N -0.347 5.347 12 C 0.046 3.954 13 H 0.089 0.911 14 C -0.161 4.161 15 C -0.148 4.148 16 C -0.149 4.149 17 C -0.110 4.110 18 H 0.102 0.898 19 C 0.034 3.966 20 N -0.381 5.381 21 C -0.381 4.381 22 H 0.087 0.913 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.800 3.200 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.198 1.198 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.247 0.753 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.025 0.975 44 H 0.210 0.790 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.291 21.202 -12.202 25.830 hybrid contribution 1.707 -1.569 0.857 2.472 sum -6.584 19.634 -11.346 23.612 Atomic orbital electron populations 1.20468 0.83052 1.04856 1.05276 1.22628 0.98467 0.87006 0.95210 1.77277 0.84558 1.21338 1.27220 1.49025 1.08057 1.02285 1.55911 1.22501 0.82609 0.94727 1.05988 1.17941 0.83219 0.82779 1.02486 1.91678 1.49888 1.71837 1.93784 1.19712 0.91119 0.95347 1.26518 1.17180 0.76016 0.84389 0.83602 1.90777 1.53027 1.68364 1.32674 1.46113 1.67320 1.12933 1.08378 1.21601 0.95725 0.80599 0.97447 0.91105 1.22478 0.92751 1.01962 0.98878 1.22317 0.96986 0.98738 0.96762 1.22408 0.93739 0.97645 1.01086 1.22272 0.94692 0.97592 0.96447 0.89842 1.20784 0.93813 0.94334 0.87626 1.42458 1.28582 1.61525 1.05566 1.19587 1.01347 1.23359 0.93762 0.91329 1.25502 1.02338 1.03108 0.95346 1.69794 1.41597 1.51401 0.98780 0.85185 0.79445 0.78230 0.77173 1.21381 1.21836 1.19774 0.87562 0.88411 0.90072 0.88141 0.87705 0.86368 0.75294 0.90004 0.91077 0.90301 0.90129 0.92184 0.92070 0.96641 0.97523 0.79049 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.28 71.23 0.73 -0.33 16 2 C 0.13 2.77 7.26 43.55 0.32 3.09 16 3 N -0.28 -5.92 12.49 -46.64 -0.58 -6.50 16 4 N -0.37 -7.26 3.98 -368.85 -1.47 -8.73 16 5 C 0.08 0.80 11.43 127.77 1.46 2.26 16 6 C 0.28 6.95 8.70 84.36 0.73 7.69 16 7 F -0.09 -2.42 17.31 44.97 0.78 -1.64 16 8 C -0.31 -7.85 5.89 -20.09 -0.12 -7.97 16 9 C 0.60 17.35 7.34 86.59 0.64 17.99 16 10 O -0.57 -20.51 16.79 -4.15 -0.07 -20.58 16 11 N -0.70 -17.70 4.99 -442.61 -2.21 -19.91 16 12 C 0.15 4.15 2.79 45.71 0.13 4.28 16 13 H 0.07 2.31 7.30 -2.39 -0.02 2.29 16 14 C -0.12 -2.68 6.59 31.32 0.21 -2.48 16 15 C -0.11 -2.31 6.83 31.67 0.22 -2.09 16 16 C -0.11 -3.19 6.19 31.89 0.20 -2.99 16 17 C -0.09 -2.83 2.58 -9.72 -0.03 -2.85 16 18 H 0.08 2.56 7.73 -2.39 -0.02 2.54 16 19 C 0.16 6.69 5.54 86.38 0.48 7.17 16 20 N -0.74 -37.94 5.49 -343.45 -1.89 -39.82 16 21 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 22 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 23 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 24 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 25 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 28 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 29 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.19 8.01 -2.39 -0.02 1.17 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.41 8.97 8.32 -92.71 -0.77 8.20 16 36 H 0.08 1.58 7.92 -2.39 -0.02 1.56 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.85 7.97 -2.38 -0.02 1.83 16 41 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.02 0.67 8.02 -2.39 -0.02 0.65 16 43 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.38 20.13 7.64 -92.71 -0.71 19.42 16 45 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -74.40 382.35 2.68 -71.71 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.46 Total: 28.55 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 6.27 Total: 6.77 kcal Atomic # 7 Polarization: -127.63 SS G_CDS: -5.86 Total: -133.49 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.07 Total: -20.58 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.64 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -74.40 2.68 -71.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699033740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.365 kcal (2) G-P(sol) polarization free energy of solvation -74.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds