Wall clock time and date at job start Tue Mar 31 2020 14:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34239 * 117.00043 * 2 1 4 4 O 1.20828 * 119.99831 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99915 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.55201 * 350.28347 * 5 3 2 7 7 C 1.53000 * 117.51840 * 135.97746 * 5 3 2 8 8 C 1.52999 * 117.50050 * 204.60949 * 5 3 2 9 9 H 1.08995 * 117.50149 * 144.97965 * 8 5 3 10 10 C 1.50703 * 117.49604 * 359.97438 * 8 5 3 11 11 O 1.21283 * 119.99911 * 261.91674 * 10 8 5 12 12 N 1.34771 * 119.99961 * 81.91687 * 10 8 5 13 13 C 1.46507 * 119.99759 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.46772 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.45942 * 60.02796 * 14 13 12 16 16 C 1.53038 * 109.45918 * 180.02562 * 14 13 12 17 17 C 1.53197 * 109.31307 * 181.38954 * 16 14 13 18 18 N 1.46927 * 108.77394 * 305.36089 * 17 16 14 19 19 C 1.36935 * 120.63291 * 233.33598 * 18 17 16 20 20 H 1.07992 * 119.99988 * 154.52418 * 19 18 17 21 21 C 1.38817 * 119.99700 * 334.53011 * 19 18 17 22 22 N 1.31614 * 119.99909 * 159.64281 * 21 19 18 23 23 Si 1.86794 * 120.00085 * 339.63325 * 21 19 18 24 24 H 1.48507 * 109.47154 * 95.97610 * 23 21 19 25 25 H 1.48499 * 109.47415 * 215.97547 * 23 21 19 26 26 H 1.48505 * 109.47370 * 335.97944 * 23 21 19 27 27 C 1.46929 * 118.73423 * 53.61306 * 18 17 16 28 28 C 1.53041 * 109.46527 * 300.07019 * 14 13 12 29 29 H 1.08993 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46857 * 300.00389 * 1 2 3 31 31 H 1.09003 * 109.47294 * 59.99754 * 1 2 3 32 32 H 1.09008 * 117.49790 * 359.97438 * 7 5 3 33 33 H 1.08995 * 117.50431 * 214.97194 * 7 5 3 34 34 H 0.96998 * 120.00092 * 359.97438 * 12 10 8 35 35 H 1.08997 * 109.47299 * 60.00216 * 13 12 10 36 36 H 1.08992 * 109.46990 * 299.99486 * 13 12 10 37 37 H 1.08999 * 109.47117 * 179.97438 * 15 14 13 38 38 H 1.08998 * 109.47086 * 299.97262 * 15 14 13 39 39 H 1.09005 * 109.46931 * 59.97507 * 15 14 13 40 40 H 1.09000 * 109.50010 * 61.43167 * 16 14 13 41 41 H 1.09005 * 109.50045 * 301.34080 * 16 14 13 42 42 H 1.09002 * 109.58584 * 185.57784 * 17 16 14 43 43 H 1.08995 * 109.58561 * 65.15288 * 17 16 14 44 44 H 0.96997 * 120.00352 * 179.97438 * 22 21 19 45 45 H 1.08991 * 109.58639 * 66.17997 * 27 18 17 46 46 H 1.09002 * 109.58314 * 186.60372 * 27 18 17 47 47 H 1.08998 * 109.49383 * 298.56742 * 28 14 13 48 48 H 1.08997 * 109.49567 * 58.65819 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0865 0.3316 0.1670 7 6 4.2216 2.2861 -0.9423 8 6 4.2071 2.5441 0.5657 9 1 5.1485 2.4358 1.1042 10 6 3.2848 3.6200 1.0787 11 8 3.0087 4.5683 0.3747 12 7 2.7670 3.5285 2.3195 13 6 1.8709 4.5747 2.8183 14 6 1.4279 4.2307 4.2418 15 6 2.6562 4.1365 5.1492 16 6 0.4914 5.3233 4.7624 17 6 0.0775 4.9933 6.2000 18 7 -0.4980 3.6417 6.2279 19 6 -1.7360 3.4215 6.7701 20 1 -2.3253 2.5769 6.4452 21 6 -2.2334 4.2841 7.7373 22 7 -3.5277 4.3348 7.9710 23 14 -1.0660 5.3728 8.7074 24 1 -1.0036 6.7164 8.0777 25 1 -1.5551 5.5028 10.1035 26 1 0.2890 4.7651 8.7121 27 6 0.2829 2.5298 5.6686 28 6 0.6939 2.8878 4.2369 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.5641 2.8943 -1.5637 33 1 5.1727 2.0081 -1.3962 34 1 2.9876 2.7699 2.8824 35 1 0.9957 4.6420 2.1721 36 1 2.3947 5.5305 2.8215 37 1 2.3408 3.8918 6.1634 38 1 3.3230 3.3580 4.7784 39 1 3.1799 5.0925 5.1522 40 1 -0.3956 5.3737 4.1309 41 1 1.0068 6.2837 4.7436 42 1 -0.6658 5.7140 6.5409 43 1 0.9517 5.0318 6.8499 44 1 -3.8753 4.9372 8.6470 45 1 1.1737 2.3674 6.2752 46 1 -0.3250 1.6251 5.6588 47 1 -0.1950 2.9614 3.6104 48 1 1.3534 2.1141 3.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699857434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:52 Heat of formation + Delta-G solvation = -69.228712 kcal Electronic energy + Delta-G solvation = -29234.818082 eV Core-core repulsion = 25291.702939 eV Total energy + Delta-G solvation = -3943.115143 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12468 -39.83796 -38.82184 -37.09447 -36.01344 -35.15940 -33.06595 -31.28447 -30.41377 -28.49751 -27.49449 -27.12806 -25.12586 -24.35479 -23.46557 -22.57549 -21.05320 -20.91183 -20.08010 -18.56487 -18.12405 -17.33204 -16.54504 -16.50824 -16.09308 -15.89655 -15.70026 -15.12275 -14.77142 -14.31767 -14.17399 -13.92337 -13.83440 -13.48750 -13.39321 -13.30873 -13.01875 -12.49846 -12.43649 -12.21144 -12.11644 -11.98242 -11.72140 -11.54074 -11.20959 -11.13891 -10.99184 -10.86611 -10.78156 -10.69242 -10.59689 -10.44520 -10.05268 -9.87755 -9.77806 -9.62054 -9.36282 -8.92492 -8.62105 -6.96499 -5.93111 -3.27614 1.69889 2.31537 2.68038 3.05614 3.32842 3.42834 3.48339 3.50383 4.12891 4.26610 4.39306 4.53580 4.59831 4.83511 4.93492 4.94095 4.97185 5.03414 5.03751 5.12767 5.19063 5.24953 5.39318 5.41527 5.59392 5.61170 5.74156 5.83018 5.89795 5.95811 6.03717 6.08571 6.14393 6.18539 6.27098 6.37585 6.44357 6.52285 6.54836 6.68210 6.68628 6.73100 7.00168 7.51471 7.54385 7.96227 8.28208 8.33593 8.95376 9.73759 10.11230 11.23003 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.003438 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.220641 B = 8142.990907 C = 9065.614125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.478 3.522 4 O -0.481 6.481 5 C -0.154 4.154 6 H 0.143 0.857 7 C -0.111 4.111 8 C -0.154 4.154 9 H 0.143 0.857 10 C 0.548 3.452 11 O -0.530 6.530 12 N -0.717 5.717 13 C 0.134 3.866 14 C -0.064 4.064 15 C -0.144 4.144 16 C -0.121 4.121 17 C 0.127 3.873 18 N -0.605 5.605 19 C -0.258 4.258 20 H 0.085 0.915 21 C 0.021 3.979 22 N -0.910 5.910 23 Si 0.884 3.116 24 H -0.290 1.290 25 H -0.305 1.305 26 H -0.269 1.269 27 C 0.149 3.851 28 C -0.120 4.120 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.397 0.603 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.029 0.971 44 H 0.262 0.738 45 H 0.024 0.976 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.786 -8.266 -15.787 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.320 3.680 4 O -0.367 6.367 5 C -0.174 4.174 6 H 0.161 0.839 7 C -0.148 4.148 8 C -0.175 4.175 9 H 0.161 0.839 10 C 0.332 3.668 11 O -0.406 6.406 12 N -0.368 5.368 13 C 0.011 3.989 14 C -0.065 4.065 15 C -0.201 4.201 16 C -0.161 4.161 17 C 0.002 3.998 18 N -0.329 5.329 19 C -0.386 4.386 20 H 0.103 0.897 21 C -0.178 4.178 22 N -0.554 5.554 23 Si 0.715 3.285 24 H -0.218 1.218 25 H -0.233 1.233 26 H -0.194 1.194 27 C 0.023 3.977 28 C -0.159 4.159 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.167 -7.220 -16.180 24.670 hybrid contribution 0.414 0.240 0.947 1.062 sum 17.581 -6.980 -15.232 24.287 Atomic orbital electron populations 1.23326 0.75513 1.03866 1.03035 1.86434 1.23897 1.32821 1.84135 1.22501 0.90309 0.81805 0.73422 1.90806 1.66326 1.35866 1.43709 1.21820 0.89403 0.96951 1.09193 0.83946 1.23107 1.02635 0.97676 0.91401 1.22452 1.01076 0.94471 0.99512 0.83895 1.19193 0.79962 0.86078 0.81522 1.90689 1.59816 1.33657 1.56437 1.45896 1.48916 1.26473 1.15544 1.21468 0.93109 0.89860 0.94468 1.20685 0.95713 0.97284 0.92778 1.21965 0.96473 1.00911 1.00764 1.22012 0.98467 0.96110 0.99535 1.21354 0.96873 0.88098 0.93506 1.44329 1.17894 1.01015 1.69615 1.18936 0.90279 1.13358 1.16026 0.89721 1.25235 0.95676 0.98702 0.98172 1.69831 1.11100 1.39492 1.34952 0.86942 0.82043 0.80178 0.79371 1.21793 1.23338 1.19448 1.20932 0.94416 0.91334 0.90981 1.22027 0.99301 0.94776 0.99821 0.87907 0.91312 0.91872 0.86677 0.86135 0.76799 0.91407 0.91878 0.91154 0.93478 0.92986 0.91424 0.92567 0.91196 0.95300 0.92825 0.95799 0.92159 0.91791 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -3.71 10.57 -39.28 -0.42 -4.12 16 3 C 0.48 5.44 7.56 36.00 0.27 5.71 16 4 O -0.48 -7.25 14.21 -21.75 -0.31 -7.56 16 5 C -0.15 -1.20 6.30 -91.78 -0.58 -1.77 16 6 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 7 C -0.11 -0.83 9.67 -26.73 -0.26 -1.08 16 8 C -0.15 -1.31 6.17 -91.77 -0.57 -1.87 16 9 H 0.14 0.75 8.14 -51.93 -0.42 0.32 16 10 C 0.55 7.24 4.96 -10.99 -0.05 7.19 16 11 O -0.53 -9.26 16.56 1.09 0.02 -9.24 16 12 N -0.72 -8.92 4.95 -60.29 -0.30 -9.22 16 13 C 0.13 1.95 4.56 -4.04 -0.02 1.93 16 14 C -0.06 -0.96 0.53 -154.47 -0.08 -1.04 16 15 C -0.14 -1.93 7.54 37.16 0.28 -1.65 16 16 C -0.12 -2.15 4.91 -26.61 -0.13 -2.28 16 17 C 0.13 2.73 3.71 -3.71 -0.01 2.72 16 18 N -0.60 -14.12 2.80 -172.32 -0.48 -14.60 16 19 C -0.26 -7.19 10.06 -15.06 -0.15 -7.34 16 20 H 0.09 2.52 8.05 -52.49 -0.42 2.10 16 21 C 0.02 0.60 5.26 -17.43 -0.09 0.51 16 22 N -0.91 -28.10 13.97 55.49 0.78 -27.32 16 23 Si 0.88 22.42 24.33 -169.99 -4.14 18.29 16 24 H -0.29 -7.16 6.73 56.52 0.38 -6.78 16 25 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 26 H -0.27 -6.61 6.30 56.52 0.36 -6.25 16 27 C 0.15 2.83 6.05 -3.71 -0.02 2.81 16 28 C -0.12 -1.91 4.75 -26.61 -0.13 -2.04 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.70 8.13 -51.92 -0.42 0.28 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.11 1.15 7.97 -51.92 -0.41 0.74 16 33 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.40 4.15 6.16 -40.82 -0.25 3.90 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.08 4.98 -51.93 -0.26 0.82 16 38 H 0.05 0.52 6.86 -51.93 -0.36 0.16 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.68 4.32 -51.93 -0.22 1.45 16 43 H 0.03 0.61 5.47 -51.93 -0.28 0.33 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 45 H 0.02 0.43 6.69 -51.93 -0.35 0.09 16 46 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.05 0.64 6.82 -51.93 -0.35 0.29 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -35.49 371.31 -7.32 -42.81 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.60 Total: 2.21 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.47 Total: 3.17 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.01 Total: -51.15 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.71 Total: -20.92 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.49 -7.32 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699857434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.415 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds