Wall clock time and date at job start Tue Mar 31 2020 14:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34239 * 117.00043 * 2 1 4 4 O 1.20828 * 119.99831 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99915 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.55201 * 350.28347 * 5 3 2 7 7 C 1.53000 * 117.51840 * 135.97746 * 5 3 2 8 8 C 1.52999 * 117.50050 * 204.60949 * 5 3 2 9 9 H 1.08995 * 117.50149 * 144.97965 * 8 5 3 10 10 C 1.50703 * 117.49604 * 359.97438 * 8 5 3 11 11 O 1.21283 * 119.99911 * 261.91674 * 10 8 5 12 12 N 1.34771 * 119.99961 * 81.91687 * 10 8 5 13 13 C 1.46507 * 119.99759 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.46772 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.45942 * 60.02796 * 14 13 12 16 16 C 1.53038 * 109.45918 * 180.02562 * 14 13 12 17 17 C 1.53197 * 109.31307 * 181.38954 * 16 14 13 18 18 N 1.46927 * 108.77394 * 305.36089 * 17 16 14 19 19 C 1.36935 * 120.63291 * 233.33598 * 18 17 16 20 20 H 1.07992 * 119.99988 * 154.52418 * 19 18 17 21 21 C 1.38817 * 119.99700 * 334.53011 * 19 18 17 22 22 N 1.31614 * 119.99909 * 159.64281 * 21 19 18 23 23 Si 1.86794 * 120.00085 * 339.63325 * 21 19 18 24 24 H 1.48507 * 109.47154 * 95.97610 * 23 21 19 25 25 H 1.48499 * 109.47415 * 215.97547 * 23 21 19 26 26 H 1.48505 * 109.47370 * 335.97944 * 23 21 19 27 27 C 1.46929 * 118.73423 * 53.61306 * 18 17 16 28 28 C 1.53041 * 109.46527 * 300.07019 * 14 13 12 29 29 H 1.08993 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46857 * 300.00389 * 1 2 3 31 31 H 1.09003 * 109.47294 * 59.99754 * 1 2 3 32 32 H 1.09008 * 117.49790 * 359.97438 * 7 5 3 33 33 H 1.08995 * 117.50431 * 214.97194 * 7 5 3 34 34 H 0.96998 * 120.00092 * 359.97438 * 12 10 8 35 35 H 1.08997 * 109.47299 * 60.00216 * 13 12 10 36 36 H 1.08992 * 109.46990 * 299.99486 * 13 12 10 37 37 H 1.08999 * 109.47117 * 179.97438 * 15 14 13 38 38 H 1.08998 * 109.47086 * 299.97262 * 15 14 13 39 39 H 1.09005 * 109.46931 * 59.97507 * 15 14 13 40 40 H 1.09000 * 109.50010 * 61.43167 * 16 14 13 41 41 H 1.09005 * 109.50045 * 301.34080 * 16 14 13 42 42 H 1.09002 * 109.58584 * 185.57784 * 17 16 14 43 43 H 1.08995 * 109.58561 * 65.15288 * 17 16 14 44 44 H 0.96997 * 120.00352 * 179.97438 * 22 21 19 45 45 H 1.08991 * 109.58639 * 66.17997 * 27 18 17 46 46 H 1.09002 * 109.58314 * 186.60372 * 27 18 17 47 47 H 1.08998 * 109.49383 * 298.56742 * 28 14 13 48 48 H 1.08997 * 109.49567 * 58.65819 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0865 0.3316 0.1670 7 6 4.2216 2.2861 -0.9423 8 6 4.2071 2.5441 0.5657 9 1 5.1485 2.4358 1.1042 10 6 3.2848 3.6200 1.0787 11 8 3.0087 4.5683 0.3747 12 7 2.7670 3.5285 2.3195 13 6 1.8709 4.5747 2.8183 14 6 1.4279 4.2307 4.2418 15 6 2.6562 4.1365 5.1492 16 6 0.4914 5.3233 4.7624 17 6 0.0775 4.9933 6.2000 18 7 -0.4980 3.6417 6.2279 19 6 -1.7360 3.4215 6.7701 20 1 -2.3253 2.5769 6.4452 21 6 -2.2334 4.2841 7.7373 22 7 -3.5277 4.3348 7.9710 23 14 -1.0660 5.3728 8.7074 24 1 -1.0036 6.7164 8.0777 25 1 -1.5551 5.5028 10.1035 26 1 0.2890 4.7651 8.7121 27 6 0.2829 2.5298 5.6686 28 6 0.6939 2.8878 4.2369 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.5641 2.8943 -1.5637 33 1 5.1727 2.0081 -1.3962 34 1 2.9876 2.7699 2.8824 35 1 0.9957 4.6420 2.1721 36 1 2.3947 5.5305 2.8215 37 1 2.3408 3.8918 6.1634 38 1 3.3230 3.3580 4.7784 39 1 3.1799 5.0925 5.1522 40 1 -0.3956 5.3737 4.1309 41 1 1.0068 6.2837 4.7436 42 1 -0.6658 5.7140 6.5409 43 1 0.9517 5.0318 6.8499 44 1 -3.8753 4.9372 8.6470 45 1 1.1737 2.3674 6.2752 46 1 -0.3250 1.6251 5.6588 47 1 -0.1950 2.9614 3.6104 48 1 1.3534 2.1141 3.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699857434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:51 Heat of formation + Delta-G solvation = -94.269717 kcal Electronic energy + Delta-G solvation = -29235.903942 eV Core-core repulsion = 25291.702939 eV Total energy + Delta-G solvation = -3944.201003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.98843 -40.97364 -40.04805 -37.97608 -36.95683 -36.57390 -34.62216 -33.14839 -31.99380 -29.31057 -28.98343 -28.20987 -26.20659 -25.53247 -24.82249 -23.93683 -22.61723 -21.74633 -21.02210 -19.76448 -19.33925 -18.43046 -18.13087 -17.40350 -17.39095 -17.01033 -16.61474 -16.50796 -15.99552 -15.79994 -15.52154 -15.31658 -14.95908 -14.87191 -14.58830 -14.28439 -14.21039 -14.00683 -13.93209 -13.59652 -13.19901 -13.17041 -12.93026 -12.90199 -12.45679 -12.24620 -12.22367 -12.14295 -11.85508 -11.85002 -11.73442 -11.66855 -11.55432 -11.50106 -11.24614 -11.15376 -10.89108 -10.67937 -10.03633 -8.93049 -8.16581 -5.46935 0.87626 1.29976 1.40220 1.49599 1.57697 1.74752 2.19862 2.41487 2.72798 3.04741 3.34863 3.48632 3.63739 3.69403 3.71112 3.75647 3.80628 3.90695 4.24654 4.26206 4.26751 4.30034 4.32638 4.47406 4.51623 4.65200 4.67325 4.69529 4.72254 4.76157 4.79256 4.81875 4.89874 4.99089 5.02241 5.03390 5.14981 5.21305 5.26714 5.33124 5.34136 5.49728 5.58847 5.84833 6.11547 6.58502 6.67809 6.91514 7.31989 7.63154 8.02662 9.03485 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.003438 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.220641 B = 8142.990907 C = 9065.614125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.470 3.530 4 O -0.529 6.529 5 C -0.144 4.144 6 H 0.186 0.814 7 C -0.106 4.106 8 C -0.154 4.154 9 H 0.189 0.811 10 C 0.540 3.460 11 O -0.582 6.582 12 N -0.708 5.708 13 C 0.147 3.853 14 C -0.054 4.054 15 C -0.139 4.139 16 C -0.118 4.118 17 C 0.124 3.876 18 N -0.619 5.619 19 C -0.247 4.247 20 H 0.049 0.951 21 C -0.041 4.041 22 N -0.962 5.962 23 Si 0.950 3.050 24 H -0.281 1.281 25 H -0.313 1.313 26 H -0.250 1.250 27 C 0.146 3.854 28 C -0.108 4.108 29 H 0.134 0.866 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.165 0.835 34 H 0.410 0.590 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.260 0.740 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.034 0.966 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.577 -9.536 -16.202 29.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.269 6.269 3 C 0.314 3.686 4 O -0.418 6.418 5 C -0.163 4.163 6 H 0.203 0.797 7 C -0.144 4.144 8 C -0.175 4.175 9 H 0.206 0.794 10 C 0.327 3.673 11 O -0.462 6.462 12 N -0.360 5.360 13 C 0.023 3.977 14 C -0.055 4.055 15 C -0.196 4.196 16 C -0.158 4.158 17 C -0.001 4.001 18 N -0.344 5.344 19 C -0.377 4.377 20 H 0.067 0.933 21 C -0.235 4.235 22 N -0.608 5.608 23 Si 0.779 3.221 24 H -0.208 1.208 25 H -0.243 1.243 26 H -0.173 1.173 27 C 0.021 3.979 28 C -0.147 4.147 29 H 0.152 0.848 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.182 0.818 34 H 0.247 0.753 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 22.021 -8.544 -16.610 28.876 hybrid contribution -1.175 0.559 0.944 1.608 sum 20.846 -7.985 -15.666 27.272 Atomic orbital electron populations 1.23461 0.75171 1.05561 1.01921 1.86447 1.24342 1.32468 1.83688 1.23398 0.91997 0.81255 0.71956 1.90805 1.67717 1.37314 1.45962 1.22066 0.86800 0.98507 1.08945 0.79659 1.23251 1.03728 0.96723 0.90652 1.22569 1.01452 0.92925 1.00544 0.79360 1.20075 0.79813 0.86501 0.80916 1.90667 1.61751 1.36136 1.57606 1.45790 1.48140 1.26238 1.15880 1.21122 0.92437 0.90862 0.93306 1.20563 0.95994 0.95389 0.93531 1.21926 0.95678 1.02867 0.99156 1.21933 0.98589 0.98524 0.96747 1.21401 0.96349 0.86340 0.95969 1.44454 1.17094 1.03164 1.69675 1.18885 0.91752 1.11679 1.15364 0.93343 1.25907 0.96963 1.01106 0.99531 1.69976 1.13154 1.41547 1.36163 0.85859 0.80495 0.78820 0.76876 1.20813 1.24274 1.17344 1.21124 0.94462 0.89616 0.92671 1.21880 0.98973 0.96552 0.97293 0.84798 0.93069 0.92417 0.90114 0.81778 0.75275 0.94722 0.91660 0.92598 0.90427 0.91675 0.93806 0.90117 0.93986 0.93564 0.93070 0.93266 0.93256 0.94697 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.76 16 2 O -0.35 -6.77 10.57 -51.50 -0.54 -7.31 16 3 C 0.47 10.00 7.56 71.23 0.54 10.54 16 4 O -0.53 -16.15 14.21 24.82 0.35 -15.79 16 5 C -0.14 -1.68 6.30 -11.54 -0.07 -1.75 16 6 H 0.19 0.60 8.14 -2.39 -0.02 0.58 16 7 C -0.11 -1.24 9.67 30.60 0.30 -0.94 16 8 C -0.15 -2.00 6.17 -11.54 -0.07 -2.08 16 9 H 0.19 0.75 8.14 -2.39 -0.02 0.73 16 10 C 0.54 13.30 4.96 87.66 0.43 13.74 16 11 O -0.58 -20.38 16.56 1.22 0.02 -20.36 16 12 N -0.71 -15.98 4.95 -463.06 -2.29 -18.27 16 13 C 0.15 4.10 4.56 86.38 0.39 4.50 16 14 C -0.05 -1.52 0.53 -52.15 -0.03 -1.55 16 15 C -0.14 -3.15 7.54 71.98 0.54 -2.60 16 16 C -0.12 -4.09 4.91 30.67 0.15 -3.94 16 17 C 0.12 5.20 3.71 86.36 0.32 5.52 16 18 N -0.62 -28.92 2.80 -699.10 -1.96 -30.88 16 19 C -0.25 -14.24 10.06 84.03 0.85 -13.39 16 20 H 0.05 3.07 8.05 -2.91 -0.02 3.04 16 21 C -0.04 -2.44 5.26 84.86 0.45 -1.99 16 22 N -0.96 -61.83 13.97 21.65 0.30 -61.53 16 23 Si 0.95 46.95 24.33 68.60 1.67 48.62 16 24 H -0.28 -13.33 6.73 99.48 0.67 -12.66 16 25 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 26 H -0.25 -11.37 6.30 99.48 0.63 -10.75 16 27 C 0.15 5.37 6.05 86.36 0.52 5.89 16 28 C -0.11 -3.30 4.75 30.67 0.15 -3.16 16 29 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.07 8.13 -2.38 -0.02 1.05 16 31 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.08 1.56 7.97 -2.38 -0.02 1.54 16 33 H 0.16 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.41 6.94 6.16 -92.71 -0.57 6.37 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.47 4.98 -2.39 -0.01 1.46 16 38 H 0.08 1.29 6.86 -2.39 -0.02 1.28 16 39 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 42 H 0.04 2.00 4.32 -2.39 -0.01 1.99 16 43 H 0.05 1.81 5.47 -2.39 -0.01 1.79 16 44 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 45 H 0.05 1.62 6.69 -2.39 -0.02 1.60 16 46 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 47 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.08 1.95 6.82 -2.39 -0.02 1.94 16 Total: -1.00 -84.05 371.31 3.50 -80.56 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.28 Total: 14.41 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.66 Total: 10.55 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -3.95 Total: -110.67 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.17 Total: -43.46 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.67 Total: 48.62 kcal Total: -84.05 3.50 -80.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699857434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.713 kcal (2) G-P(sol) polarization free energy of solvation -84.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds