Wall clock time and date at job start Tue Mar 31 2020 14:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99822 * 2 1 4 4 O 1.20826 * 120.00419 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99900 * 180.02562 * 3 2 1 6 6 H 1.08997 * 115.55238 * 34.33640 * 5 3 2 7 7 C 1.53076 * 117.51460 * 248.61059 * 5 3 2 8 8 C 1.53003 * 117.49877 * 179.97438 * 5 3 2 9 9 H 1.08996 * 117.49901 * 0.02562 * 8 5 3 10 10 C 1.50700 * 117.49973 * 215.00253 * 8 5 3 11 11 O 1.21279 * 120.00086 * 0.09058 * 10 8 5 12 12 N 1.34777 * 119.99946 * 180.08987 * 10 8 5 13 13 C 1.46495 * 120.00073 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47449 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.45954 * 60.02617 * 14 13 12 16 16 C 1.53038 * 109.45864 * 300.07052 * 14 13 12 17 17 C 1.53193 * 109.31310 * 178.61101 * 16 14 13 18 18 N 1.46921 * 108.77317 * 54.63805 * 17 16 14 19 19 C 1.36933 * 120.63244 * 126.41548 * 18 17 16 20 20 H 1.08004 * 119.99986 * 332.60468 * 19 18 17 21 21 C 1.38820 * 120.00139 * 152.60491 * 19 18 17 22 22 N 1.31616 * 119.99840 * 159.34317 * 21 19 18 23 23 Si 1.86800 * 119.99986 * 339.34397 * 21 19 18 24 24 H 1.48501 * 109.47178 * 92.93795 * 23 21 19 25 25 H 1.48497 * 109.46984 * 212.94109 * 23 21 19 26 26 H 1.48500 * 109.46913 * 332.94029 * 23 21 19 27 27 C 1.46931 * 118.73735 * 306.38625 * 18 17 16 28 28 C 1.53032 * 109.46305 * 180.02562 * 14 13 12 29 29 H 1.08992 * 109.47681 * 59.99456 * 1 2 3 30 30 H 1.09005 * 109.47292 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47040 * 299.99805 * 1 2 3 32 32 H 1.08998 * 117.51634 * 145.04815 * 7 5 3 33 33 H 1.08999 * 117.49703 * 0.02562 * 7 5 3 34 34 H 0.97001 * 119.99886 * 0.02562 * 12 10 8 35 35 H 1.08995 * 109.47395 * 300.00097 * 13 12 10 36 36 H 1.08999 * 109.46869 * 60.00142 * 13 12 10 37 37 H 1.09004 * 109.46776 * 59.99805 * 15 14 13 38 38 H 1.09000 * 109.47468 * 180.02562 * 15 14 13 39 39 H 1.09004 * 109.47412 * 300.00510 * 15 14 13 40 40 H 1.09000 * 109.50192 * 298.56711 * 16 14 13 41 41 H 1.09008 * 109.50174 * 58.66047 * 16 14 13 42 42 H 1.08999 * 109.58688 * 294.85115 * 17 16 14 43 43 H 1.09000 * 109.70414 * 174.49333 * 17 16 14 44 44 H 0.96998 * 120.00134 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.59039 * 293.82308 * 27 18 17 46 46 H 1.09004 * 109.70263 * 173.46885 * 27 18 17 47 47 H 1.09007 * 109.49614 * 301.33546 * 28 14 13 48 48 H 1.09004 * 109.49990 * 61.43288 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0781 0.4887 -0.5556 7 6 4.2471 1.8061 1.2634 8 6 4.2007 2.6671 -0.0012 9 1 3.5296 3.5260 -0.0007 10 6 5.4854 2.8461 -0.7685 11 8 5.9765 1.9060 -1.3565 12 7 6.0885 4.0510 -0.8012 13 6 7.3375 4.2249 -1.5466 14 6 7.8073 5.6758 -1.4234 15 6 8.0425 6.0119 0.0506 16 6 6.7367 6.6085 -1.9942 17 6 7.1952 8.0618 -1.8376 18 7 8.5182 8.2099 -2.4593 19 6 8.7411 9.1760 -3.4037 20 1 7.9254 9.5306 -4.0165 21 6 10.0154 9.6997 -3.5736 22 7 10.3354 10.2999 -4.7003 23 14 11.2760 9.5526 -2.2029 24 1 12.0896 8.3273 -2.4080 25 1 12.1628 10.7436 -2.2161 26 1 10.5777 9.4699 -0.8950 27 6 9.5976 7.3019 -2.0480 28 6 9.1118 5.8573 -2.2026 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 5.2067 1.3694 1.5399 33 1 3.6062 2.0980 2.0953 34 1 5.6958 4.8028 -0.3306 35 1 8.0993 3.5601 -1.1393 36 1 7.1702 3.9855 -2.5967 37 1 8.8046 5.3472 0.4577 38 1 8.3768 7.0456 0.1387 39 1 7.1134 5.8823 0.6056 40 1 6.5862 6.3863 -3.0506 41 1 5.8011 6.4621 -1.4543 42 1 7.2589 8.3129 -0.7788 43 1 6.4843 8.7264 -2.3286 44 1 11.2260 10.6655 -4.8192 45 1 9.8572 7.4910 -1.0064 46 1 10.4728 7.4625 -2.6776 47 1 9.8673 5.1759 -1.8112 48 1 8.9387 5.6422 -3.2571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699857438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:03 Heat of formation + Delta-G solvation = -97.330596 kcal Electronic energy + Delta-G solvation = -27843.936595 eV Core-core repulsion = 23899.602863 eV Total energy + Delta-G solvation = -3944.333732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.89747 -41.11623 -40.12506 -38.05185 -37.00627 -36.51539 -34.65227 -33.14801 -31.92374 -29.39128 -28.90758 -28.17851 -26.28850 -25.42288 -24.76037 -23.97905 -22.59727 -21.76430 -21.01453 -19.71358 -19.33870 -18.38853 -18.05091 -17.72939 -17.42292 -17.17236 -16.80243 -16.40680 -15.94577 -15.64261 -15.44547 -15.31229 -14.99053 -14.93177 -14.53769 -14.38775 -14.07474 -13.93350 -13.72937 -13.59063 -13.43574 -13.16549 -12.93232 -12.84786 -12.40543 -12.24910 -12.17601 -12.10483 -11.94916 -11.84997 -11.80074 -11.66707 -11.62728 -11.53512 -11.21122 -11.11296 -10.95932 -10.64251 -10.08813 -8.87350 -8.15214 -5.45808 0.88471 1.30871 1.35597 1.41630 1.51019 1.56857 2.20017 2.42975 2.67341 3.07352 3.38875 3.39433 3.62781 3.64033 3.74282 3.80516 3.86977 3.93921 4.12110 4.28134 4.31647 4.31778 4.38840 4.52199 4.57131 4.59642 4.70008 4.73604 4.75315 4.77714 4.82739 4.84992 4.91473 4.95234 5.05243 5.07080 5.20876 5.26567 5.27370 5.31178 5.38593 5.45397 5.63666 5.89052 6.14280 6.51097 6.61009 6.95227 7.18428 7.66058 8.06043 9.04935 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.031653 B = 0.002245 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.383354 B =12467.012420 C =12774.250559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.497 3.503 4 O -0.532 6.532 5 C -0.150 4.150 6 H 0.144 0.856 7 C -0.087 4.087 8 C -0.160 4.160 9 H 0.148 0.852 10 C 0.542 3.458 11 O -0.579 6.579 12 N -0.705 5.705 13 C 0.141 3.859 14 C -0.055 4.055 15 C -0.142 4.142 16 C -0.115 4.115 17 C 0.142 3.858 18 N -0.619 5.619 19 C -0.246 4.246 20 H 0.047 0.953 21 C -0.041 4.041 22 N -0.960 5.960 23 Si 0.950 3.050 24 H -0.276 1.276 25 H -0.314 1.314 26 H -0.256 1.256 27 C 0.122 3.878 28 C -0.117 4.117 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.415 0.585 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.260 0.740 45 H 0.041 0.959 46 H 0.042 0.958 47 H 0.081 0.919 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.893 -21.557 17.521 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.341 3.659 4 O -0.421 6.421 5 C -0.170 4.170 6 H 0.162 0.838 7 C -0.124 4.124 8 C -0.181 4.181 9 H 0.165 0.835 10 C 0.329 3.671 11 O -0.460 6.460 12 N -0.356 5.356 13 C 0.017 3.983 14 C -0.055 4.055 15 C -0.199 4.199 16 C -0.154 4.154 17 C 0.018 3.982 18 N -0.344 5.344 19 C -0.375 4.375 20 H 0.065 0.935 21 C -0.235 4.235 22 N -0.607 5.607 23 Si 0.779 3.221 24 H -0.203 1.203 25 H -0.243 1.243 26 H -0.180 1.180 27 C -0.002 4.002 28 C -0.157 4.157 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.253 0.747 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.100 0.900 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.688 -21.835 17.029 31.826 hybrid contribution 0.465 0.996 -0.356 1.156 sum -15.223 -20.839 16.673 30.724 Atomic orbital electron populations 1.23608 0.74312 1.05913 1.02735 1.86485 1.25243 1.32338 1.83443 1.22696 0.90616 0.81309 0.71275 1.90672 1.67494 1.37175 1.46809 1.21673 0.87789 0.99619 1.07886 0.83808 1.23298 1.03064 0.96636 0.89411 1.22275 0.96661 0.96082 1.03086 0.83462 1.19768 0.84844 0.82468 0.79981 1.90708 1.66954 1.41551 1.46768 1.45838 1.25363 1.11709 1.52736 1.21285 0.85545 0.95737 0.95750 1.20565 0.95022 0.93004 0.96945 1.21945 1.02740 1.01857 0.93348 1.21962 0.97917 0.95106 1.00372 1.21148 0.85444 0.95391 0.96230 1.44458 1.08683 1.34919 1.46332 1.18859 0.95177 1.14067 1.09438 0.93490 1.25955 0.99904 0.98635 0.99010 1.69982 1.21050 1.44177 1.25468 0.85856 0.78914 0.75613 0.81727 1.20267 1.24328 1.18018 1.21392 0.91067 0.90226 0.97546 1.21920 0.97279 0.96615 0.99882 0.92118 0.84954 0.91372 0.85215 0.84839 0.74675 0.91029 0.93037 0.91673 0.92973 0.90464 0.93754 0.89358 0.93681 0.93363 0.93102 0.94081 0.93944 0.90038 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.76 10.57 -51.36 -0.54 -6.30 16 3 C 0.50 9.05 7.74 71.24 0.55 9.60 16 4 O -0.53 -12.12 16.01 21.96 0.35 -11.77 16 5 C -0.15 -2.34 5.81 -11.51 -0.07 -2.41 16 6 H 0.14 2.45 7.67 -2.39 -0.02 2.43 16 7 C -0.09 -0.86 9.95 30.64 0.30 -0.56 16 8 C -0.16 -2.41 5.70 -11.52 -0.07 -2.47 16 9 H 0.15 2.02 7.67 -2.39 -0.02 2.01 16 10 C 0.54 11.24 7.61 87.66 0.67 11.90 16 11 O -0.58 -16.65 16.26 -3.03 -0.05 -16.69 16 12 N -0.70 -12.80 4.95 -463.08 -2.29 -15.09 16 13 C 0.14 3.17 4.56 86.38 0.39 3.56 16 14 C -0.05 -1.35 0.53 -52.16 -0.03 -1.38 16 15 C -0.14 -2.93 7.54 71.98 0.54 -2.39 16 16 C -0.11 -3.15 4.75 30.67 0.15 -3.01 16 17 C 0.14 5.06 6.05 86.36 0.52 5.58 16 18 N -0.62 -28.11 2.77 -699.08 -1.94 -30.04 16 19 C -0.25 -13.92 10.04 84.04 0.84 -13.07 16 20 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 21 C -0.04 -2.40 5.23 84.86 0.44 -1.95 16 22 N -0.96 -61.05 13.97 21.65 0.30 -60.75 16 23 Si 0.95 46.40 24.35 68.60 1.67 48.07 16 24 H -0.28 -12.75 6.62 99.48 0.66 -12.10 16 25 H -0.31 -15.72 7.11 99.48 0.71 -15.02 16 26 H -0.26 -11.70 6.63 99.48 0.66 -11.04 16 27 C 0.12 4.93 3.73 86.36 0.32 5.25 16 28 C -0.12 -3.70 4.90 30.67 0.15 -3.55 16 29 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 30 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.07 0.64 8.13 -2.39 -0.02 0.62 16 32 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.42 5.53 6.16 -92.71 -0.57 4.96 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.05 1.31 4.98 -2.39 -0.01 1.30 16 39 H 0.08 1.16 6.86 -2.39 -0.02 1.14 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.80 6.83 -2.38 -0.02 1.78 16 42 H 0.05 1.45 6.69 -2.39 -0.02 1.44 16 43 H 0.05 1.81 7.93 -2.39 -0.02 1.79 16 44 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 45 H 0.04 1.56 5.63 -2.39 -0.01 1.55 16 46 H 0.04 1.96 4.50 -2.39 -0.01 1.94 16 47 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -76.66 374.74 3.74 -72.92 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.31 Total: 13.07 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 5.93 Total: 6.59 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.92 Total: -105.88 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.24 Total: -34.77 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.67 Total: 48.07 kcal Total: -76.66 3.74 -72.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699857438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.407 kcal (2) G-P(sol) polarization free energy of solvation -76.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds