Wall clock time and date at job start Tue Mar 31 2020 14:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30379 * 125.96157 * 2 1 4 4 N 1.39917 * 109.01808 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.73919 * 179.97438 * 4 3 2 6 6 C 1.34409 * 108.51464 * 0.26580 * 4 3 2 7 7 F 1.35103 * 126.34343 * 179.71251 * 6 4 3 8 8 C 1.38500 * 107.31517 * 359.58043 * 6 4 3 9 9 C 1.47166 * 126.46217 * 180.19776 * 8 6 4 10 10 O 1.21639 * 119.99896 * 270.25947 * 9 8 6 11 11 N 1.34776 * 120.00285 * 90.25726 * 9 8 6 12 12 C 1.46924 * 120.62635 * 359.72367 * 11 9 8 13 13 C 1.53621 * 108.54488 * 126.37061 * 12 11 9 14 14 C 1.53043 * 109.24363 * 54.85195 * 13 12 11 15 15 C 1.53043 * 109.53765 * 298.51350 * 14 13 12 16 16 H 1.09000 * 109.49603 * 301.41462 * 15 14 13 17 17 C 1.52998 * 109.52306 * 181.33342 * 15 14 13 18 18 N 1.46497 * 109.46722 * 175.14817 * 17 15 14 19 19 C 1.36946 * 119.99991 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99341 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00217 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99998 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00027 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47123 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47051 * 120.00103 * 23 21 19 26 26 H 1.48496 * 109.47256 * 240.00539 * 23 21 19 27 27 C 1.46922 * 120.63146 * 180.02562 * 11 9 8 28 28 H 1.09000 * 109.47061 * 89.98209 * 1 2 3 29 29 H 1.09004 * 109.47084 * 209.97207 * 1 2 3 30 30 H 1.09003 * 109.47547 * 329.97975 * 1 2 3 31 31 H 1.09001 * 109.47060 * 90.03153 * 5 4 3 32 32 H 1.09004 * 109.47073 * 210.02641 * 5 4 3 33 33 H 1.09000 * 109.47212 * 330.02724 * 5 4 3 34 34 H 1.09003 * 109.58403 * 246.19851 * 12 11 9 35 35 H 1.08998 * 109.59155 * 6.62435 * 12 11 9 36 36 H 1.09004 * 109.62950 * 294.86117 * 13 12 11 37 37 H 1.09001 * 109.43797 * 174.72177 * 13 12 11 38 38 H 1.09000 * 109.45818 * 178.49851 * 14 13 12 39 39 H 1.09001 * 109.44599 * 58.52551 * 14 13 12 40 40 H 1.09003 * 109.46801 * 295.14164 * 17 15 14 41 41 H 1.08993 * 109.47155 * 55.14493 * 17 15 14 42 42 H 0.96998 * 120.00540 * 359.97438 * 18 17 15 43 43 H 0.97006 * 119.99915 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.58496 * 353.37373 * 27 11 9 45 45 H 1.09003 * 109.58553 * 113.65776 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0553 0.0000 4 7 3.6111 0.6475 -0.0006 5 6 4.7762 1.5357 -0.0013 6 6 3.6479 -0.6960 -0.0069 7 9 4.7577 -1.4665 -0.0149 8 6 2.3375 -1.1444 -0.0006 9 6 1.8931 -2.5473 0.0000 10 8 1.7086 -3.1273 -1.0532 11 7 1.6907 -3.1897 1.1674 12 6 1.9153 -2.5044 2.4475 13 6 0.6446 -2.6346 3.3009 14 6 0.2774 -4.1141 3.4364 15 6 -0.0108 -4.6988 2.0517 16 1 -0.8240 -4.1435 1.5843 17 6 -0.4101 -6.1692 2.1905 18 7 -0.7972 -6.6959 0.8794 19 6 -1.1952 -8.0004 0.7559 20 1 -1.2233 -8.6409 1.6250 21 6 -1.5625 -8.4993 -0.4863 22 7 -1.5277 -7.7187 -1.5455 23 14 -2.1047 -10.2789 -0.6549 24 1 -2.0558 -10.9393 0.6743 25 1 -3.4931 -10.3258 -1.1796 26 1 -1.1967 -10.9863 -1.5932 27 6 1.2477 -4.5904 1.1841 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8898 0.5141 31 1 5.0660 1.7557 1.0262 32 1 5.6043 1.0483 -0.5159 33 1 4.5252 2.4639 -0.5147 34 1 2.7559 -2.9654 2.9662 35 1 2.1287 -1.4511 2.2657 36 1 -0.1748 -2.0987 2.8218 37 1 0.8268 -2.2131 4.2895 38 1 -0.6087 -4.2124 4.0635 39 1 1.1072 -4.6537 3.8929 40 1 0.4344 -6.7401 2.5765 41 1 -1.2510 -6.2538 2.8788 42 1 -0.7716 -6.1207 0.0988 43 1 -1.7840 -8.0675 -2.4136 44 1 1.0204 -4.9139 0.1683 45 1 2.0360 -5.2181 1.5998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752812626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:04 Heat of formation + Delta-G solvation = 11.238392 kcal Electronic energy + Delta-G solvation = -28299.731449 eV Core-core repulsion = 24268.938067 eV Total energy + Delta-G solvation = -4030.793382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.54284 -41.67542 -39.72778 -37.41585 -34.87954 -34.43204 -32.82122 -31.63287 -30.71980 -29.91714 -29.45412 -26.68473 -25.45973 -25.12211 -23.10021 -22.43054 -21.30934 -20.89779 -20.10192 -19.14513 -17.90776 -17.27873 -17.00388 -16.64019 -16.28503 -15.92571 -14.99317 -14.92325 -14.69982 -14.43097 -14.33021 -13.97589 -13.82798 -13.63949 -13.48749 -13.44810 -13.07694 -12.85141 -12.70353 -12.63381 -12.44241 -12.38672 -12.27713 -11.47155 -11.13426 -11.04793 -10.98008 -10.80398 -10.61051 -10.34211 -10.24993 -9.94216 -9.77797 -9.61880 -9.56388 -8.89593 -8.81084 -8.44279 -6.83616 -5.66754 -2.96450 1.09819 1.62261 2.02635 2.62501 3.17286 3.49286 3.54132 3.56811 3.56990 4.03230 4.46568 4.63395 4.63627 4.68748 4.80264 4.81523 4.89750 4.92171 5.03873 5.07640 5.26156 5.37793 5.43553 5.51079 5.52383 5.62020 5.66769 5.70053 5.85496 5.89426 6.00825 6.11292 6.14894 6.17765 6.25331 6.38903 6.44789 6.59676 6.70986 6.82140 6.93165 7.08997 7.53807 7.78002 8.32584 8.50973 9.62032 10.20266 10.54436 11.55535 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.003058 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.126372 B = 9154.269386 C = 9639.197878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.134 3.866 3 N -0.272 5.272 4 N -0.377 5.377 5 C 0.094 3.906 6 C 0.288 3.712 7 F -0.088 7.088 8 C -0.277 4.277 9 C 0.592 3.408 10 O -0.517 6.517 11 N -0.601 5.601 12 C 0.110 3.890 13 C -0.131 4.131 14 C -0.112 4.112 15 C -0.106 4.106 16 H 0.075 0.925 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.120 3.880 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.019 0.981 41 H 0.022 0.978 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.105 0.895 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.755 22.037 9.673 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 N -0.095 5.095 4 N -0.162 5.162 5 C -0.047 4.047 6 C 0.141 3.859 7 F -0.067 7.067 8 C -0.293 4.293 9 C 0.377 3.623 10 O -0.391 6.391 11 N -0.334 5.334 12 C -0.013 4.013 13 C -0.170 4.170 14 C -0.150 4.150 15 C -0.126 4.126 16 H 0.094 0.906 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.001 4.001 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.123 0.877 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.842 22.861 9.137 27.319 hybrid contribution 0.281 -1.733 -0.377 1.796 sum 12.123 21.128 8.759 25.886 Atomic orbital electron populations 1.20358 0.85009 1.04111 1.04377 1.22227 0.97277 0.87896 0.95856 1.77312 0.84064 1.21101 1.26991 1.48653 1.07294 1.02527 1.57693 1.22053 0.83699 0.94682 1.04249 1.17770 0.83368 0.81818 1.02923 1.91665 1.49658 1.71593 1.93824 1.19733 0.90303 0.95893 1.23413 1.17091 0.77551 0.83913 0.83780 1.90883 1.50330 1.67084 1.30824 1.48108 1.66508 1.13592 1.05172 1.21756 0.97848 0.97398 0.84291 1.21979 0.97623 0.97810 0.99554 1.21529 1.01708 0.94610 0.97195 1.21695 0.97475 0.98367 0.95055 0.90650 1.20628 0.96613 0.89689 0.89803 1.42429 1.80249 1.10901 1.04226 1.19242 1.36654 0.87643 0.93642 0.91212 1.24757 1.02529 0.97977 0.95710 1.69688 1.54440 1.34801 0.98762 0.86145 0.77920 0.84933 0.77348 1.20631 1.21939 1.21914 1.21783 0.95643 0.79208 1.03493 0.89218 0.89681 0.89900 0.89831 0.89072 0.88168 0.91525 0.90499 0.91362 0.91035 0.91470 0.91793 0.96282 0.96058 0.78048 0.93552 0.87690 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.28 36.00 0.37 -0.42 16 2 C 0.13 1.63 7.18 -82.01 -0.59 1.04 16 3 N -0.27 -3.16 12.49 33.91 0.42 -2.73 16 4 N -0.38 -3.86 3.98 -67.93 -0.27 -4.13 16 5 C 0.09 0.50 11.43 59.85 0.68 1.18 16 6 C 0.29 3.54 8.70 -16.33 -0.14 3.40 16 7 F -0.09 -1.07 17.31 2.25 0.04 -1.03 16 8 C -0.28 -3.84 3.85 -104.97 -0.40 -4.25 16 9 C 0.59 9.94 7.24 -12.64 -0.09 9.85 16 10 O -0.52 -11.14 16.52 5.24 0.09 -11.06 16 11 N -0.60 -8.90 2.97 -173.84 -0.52 -9.41 16 12 C 0.11 1.21 6.36 -3.49 -0.02 1.19 16 13 C -0.13 -1.31 6.10 -26.39 -0.16 -1.47 16 14 C -0.11 -1.35 5.17 -26.69 -0.14 -1.49 16 15 C -0.11 -1.72 2.37 -90.48 -0.21 -1.93 16 16 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 17 C 0.16 3.22 5.66 -4.04 -0.02 3.20 16 18 N -0.73 -18.98 5.38 -59.91 -0.32 -19.30 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -29.10 13.06 55.49 0.72 -28.38 16 23 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 C 0.12 2.06 5.52 -3.69 -0.02 2.04 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.79 6.27 -51.93 -0.33 0.46 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.39 10.67 6.89 -40.82 -0.28 10.39 16 43 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.10 2.24 6.20 -51.93 -0.32 1.92 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -35.74 375.42 -7.01 -42.75 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.81 Total: 4.90 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.00 Total: 4.80 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 0.04 Total: -63.96 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.74 -7.01 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752812626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.991 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds