Wall clock time and date at job start Tue Mar 31 2020 14:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30379 * 125.96157 * 2 1 4 4 N 1.39917 * 109.01808 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.73919 * 179.97438 * 4 3 2 6 6 C 1.34409 * 108.51464 * 0.26580 * 4 3 2 7 7 F 1.35103 * 126.34343 * 179.71251 * 6 4 3 8 8 C 1.38500 * 107.31517 * 359.58043 * 6 4 3 9 9 C 1.47166 * 126.46217 * 180.19776 * 8 6 4 10 10 O 1.21639 * 119.99896 * 270.25947 * 9 8 6 11 11 N 1.34776 * 120.00285 * 90.25726 * 9 8 6 12 12 C 1.46924 * 120.62635 * 359.72367 * 11 9 8 13 13 C 1.53621 * 108.54488 * 126.37061 * 12 11 9 14 14 C 1.53043 * 109.24363 * 54.85195 * 13 12 11 15 15 C 1.53043 * 109.53765 * 298.51350 * 14 13 12 16 16 H 1.09000 * 109.49603 * 301.41462 * 15 14 13 17 17 C 1.52998 * 109.52306 * 181.33342 * 15 14 13 18 18 N 1.46497 * 109.46722 * 175.14817 * 17 15 14 19 19 C 1.36946 * 119.99991 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99341 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00217 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99998 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00027 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47123 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47051 * 120.00103 * 23 21 19 26 26 H 1.48496 * 109.47256 * 240.00539 * 23 21 19 27 27 C 1.46922 * 120.63146 * 180.02562 * 11 9 8 28 28 H 1.09000 * 109.47061 * 89.98209 * 1 2 3 29 29 H 1.09004 * 109.47084 * 209.97207 * 1 2 3 30 30 H 1.09003 * 109.47547 * 329.97975 * 1 2 3 31 31 H 1.09001 * 109.47060 * 90.03153 * 5 4 3 32 32 H 1.09004 * 109.47073 * 210.02641 * 5 4 3 33 33 H 1.09000 * 109.47212 * 330.02724 * 5 4 3 34 34 H 1.09003 * 109.58403 * 246.19851 * 12 11 9 35 35 H 1.08998 * 109.59155 * 6.62435 * 12 11 9 36 36 H 1.09004 * 109.62950 * 294.86117 * 13 12 11 37 37 H 1.09001 * 109.43797 * 174.72177 * 13 12 11 38 38 H 1.09000 * 109.45818 * 178.49851 * 14 13 12 39 39 H 1.09001 * 109.44599 * 58.52551 * 14 13 12 40 40 H 1.09003 * 109.46801 * 295.14164 * 17 15 14 41 41 H 1.08993 * 109.47155 * 55.14493 * 17 15 14 42 42 H 0.96998 * 120.00540 * 359.97438 * 18 17 15 43 43 H 0.97006 * 119.99915 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.58496 * 353.37373 * 27 11 9 45 45 H 1.09003 * 109.58553 * 113.65776 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0553 0.0000 4 7 3.6111 0.6475 -0.0006 5 6 4.7762 1.5357 -0.0013 6 6 3.6479 -0.6960 -0.0069 7 9 4.7577 -1.4665 -0.0149 8 6 2.3375 -1.1444 -0.0006 9 6 1.8931 -2.5473 0.0000 10 8 1.7086 -3.1273 -1.0532 11 7 1.6907 -3.1897 1.1674 12 6 1.9153 -2.5044 2.4475 13 6 0.6446 -2.6346 3.3009 14 6 0.2774 -4.1141 3.4364 15 6 -0.0108 -4.6988 2.0517 16 1 -0.8240 -4.1435 1.5843 17 6 -0.4101 -6.1692 2.1905 18 7 -0.7972 -6.6959 0.8794 19 6 -1.1952 -8.0004 0.7559 20 1 -1.2233 -8.6409 1.6250 21 6 -1.5625 -8.4993 -0.4863 22 7 -1.5277 -7.7187 -1.5455 23 14 -2.1047 -10.2789 -0.6549 24 1 -2.0558 -10.9393 0.6743 25 1 -3.4931 -10.3258 -1.1796 26 1 -1.1967 -10.9863 -1.5932 27 6 1.2477 -4.5904 1.1841 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8898 0.5141 31 1 5.0660 1.7557 1.0262 32 1 5.6043 1.0483 -0.5159 33 1 4.5252 2.4639 -0.5147 34 1 2.7559 -2.9654 2.9662 35 1 2.1287 -1.4511 2.2657 36 1 -0.1748 -2.0987 2.8218 37 1 0.8268 -2.2131 4.2895 38 1 -0.6087 -4.2124 4.0635 39 1 1.1072 -4.6537 3.8929 40 1 0.4344 -6.7401 2.5765 41 1 -1.2510 -6.2538 2.8788 42 1 -0.7716 -6.1207 0.0988 43 1 -1.7840 -8.0675 -2.4136 44 1 1.0204 -4.9139 0.1683 45 1 2.0360 -5.2181 1.5998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752812626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:03 Heat of formation + Delta-G solvation = -13.410282 kcal Electronic energy + Delta-G solvation = -28300.800296 eV Core-core repulsion = 24268.938067 eV Total energy + Delta-G solvation = -4031.862229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.49698 -42.60614 -40.94688 -38.76438 -36.58677 -35.27881 -34.39572 -33.06617 -31.83757 -31.21942 -30.46236 -27.70683 -27.04151 -26.14222 -24.85387 -23.43026 -22.62219 -21.85536 -21.34926 -20.24072 -19.18916 -18.78793 -18.22258 -17.69148 -17.21455 -17.18027 -16.68078 -16.13487 -15.79491 -15.67241 -15.38806 -15.34975 -15.19098 -14.80727 -14.53226 -14.37164 -14.16585 -14.07470 -13.90530 -13.75977 -13.65828 -13.31013 -13.07499 -13.00994 -12.88122 -12.68254 -12.13308 -12.07451 -12.03156 -11.91573 -11.81467 -11.54768 -11.30063 -11.09809 -10.94675 -10.44574 -9.86303 -9.69539 -8.98231 -7.92230 -5.22446 0.17223 0.83810 1.06934 1.36037 1.46641 1.48654 1.58665 1.99262 2.57165 2.69889 3.18060 3.40817 3.61859 3.70728 3.77806 3.90897 3.92833 4.06537 4.12172 4.21977 4.25269 4.31338 4.32099 4.47050 4.58829 4.59746 4.65860 4.72424 4.79188 4.82212 4.84483 4.90727 4.94037 5.07577 5.14524 5.22196 5.29580 5.36903 5.49167 5.50368 5.55347 5.59115 6.19962 6.28509 6.33093 7.05253 7.34064 8.11333 8.32852 9.31382 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.003058 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.126372 B = 9154.269386 C = 9639.197878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.132 3.868 3 N -0.273 5.273 4 N -0.364 5.364 5 C 0.080 3.920 6 C 0.289 3.711 7 F -0.089 7.089 8 C -0.302 4.302 9 C 0.590 3.410 10 O -0.581 6.581 11 N -0.594 5.594 12 C 0.106 3.894 13 C -0.124 4.124 14 C -0.105 4.105 15 C -0.093 4.093 16 H 0.057 0.943 17 C 0.158 3.842 18 N -0.749 5.749 19 C -0.242 4.242 20 H 0.080 0.920 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.262 1.262 25 H -0.293 1.293 26 H -0.296 1.296 27 C 0.127 3.873 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.030 0.970 42 H 0.371 0.629 43 H 0.249 0.751 44 H 0.053 0.947 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.662 23.635 12.598 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.034 4.034 3 N -0.096 5.096 4 N -0.148 5.148 5 C -0.058 4.058 6 C 0.140 3.860 7 F -0.068 7.068 8 C -0.318 4.318 9 C 0.377 3.623 10 O -0.461 6.461 11 N -0.325 5.325 12 C -0.015 4.015 13 C -0.161 4.161 14 C -0.143 4.143 15 C -0.112 4.112 16 H 0.076 0.924 17 C 0.032 3.968 18 N -0.392 5.392 19 C -0.374 4.374 20 H 0.098 0.902 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.186 1.186 25 H -0.220 1.220 26 H -0.223 1.223 27 C 0.004 3.996 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.774 24.503 12.170 30.193 hybrid contribution 0.100 -2.154 -1.219 2.477 sum 12.874 22.349 10.951 28.020 Atomic orbital electron populations 1.20418 0.83962 1.04963 1.04455 1.22429 0.98051 0.87238 0.95725 1.77291 0.84647 1.20734 1.26965 1.49032 1.07966 1.02137 1.55690 1.22544 0.82376 0.94550 1.06320 1.17696 0.82819 0.82749 1.02693 1.91661 1.49520 1.71825 1.93801 1.19520 0.91637 0.94518 1.26144 1.17564 0.76512 0.84968 0.83269 1.90845 1.53303 1.68800 1.33124 1.48178 1.65187 1.12661 1.06472 1.22081 0.99238 0.97856 0.82372 1.21969 0.96747 0.96236 1.01188 1.21510 1.02890 0.95948 0.93960 1.21548 0.96109 0.95875 0.97708 0.92440 1.20845 0.96802 0.92034 0.87167 1.42701 1.80289 1.10196 1.05973 1.19706 1.35020 0.88838 0.93859 0.90227 1.25655 1.03688 1.02427 0.95534 1.69879 1.56426 1.36859 0.99092 0.85035 0.76894 0.79771 0.77827 1.18583 1.22045 1.22315 1.21488 0.96454 0.80886 1.00772 0.89550 0.90482 0.87300 0.87434 0.87624 0.86653 0.89749 0.89252 0.91598 0.87262 0.90162 0.90462 0.95599 0.95230 0.79736 0.94185 0.92856 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.28 71.24 0.73 -0.80 16 2 C 0.13 3.09 7.18 43.55 0.31 3.41 16 3 N -0.27 -5.84 12.49 -46.64 -0.58 -6.42 16 4 N -0.36 -6.70 3.98 -368.84 -1.47 -8.17 16 5 C 0.08 0.61 11.43 127.77 1.46 2.07 16 6 C 0.29 6.83 8.70 84.36 0.73 7.56 16 7 F -0.09 -2.08 17.31 44.97 0.78 -1.31 16 8 C -0.30 -8.38 3.85 -20.09 -0.08 -8.45 16 9 C 0.59 20.75 7.24 86.59 0.63 21.38 16 10 O -0.58 -27.17 16.52 -4.15 -0.07 -27.24 16 11 N -0.59 -17.82 2.97 -822.16 -2.44 -20.26 16 12 C 0.11 2.08 6.36 86.51 0.55 2.63 16 13 C -0.12 -2.05 6.10 30.82 0.19 -1.86 16 14 C -0.11 -2.24 5.17 30.62 0.16 -2.09 16 15 C -0.09 -3.00 2.37 -10.70 -0.03 -3.03 16 16 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 17 C 0.16 6.34 5.66 86.38 0.49 6.83 16 18 N -0.75 -40.02 5.38 -343.46 -1.85 -41.86 16 19 C -0.24 -14.06 9.99 84.03 0.84 -13.22 16 20 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 21 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 22 N -0.97 -63.35 13.06 21.65 0.28 -63.07 16 23 Si 0.98 48.02 29.55 68.60 2.03 50.05 16 24 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 27 C 0.13 4.51 5.52 86.38 0.48 4.99 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 1.59 8.01 -2.39 -0.02 1.57 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.60 6.27 -2.39 -0.01 1.59 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.37 21.79 6.89 -92.71 -0.64 21.15 16 43 H 0.25 15.74 8.31 -92.70 -0.77 14.97 16 44 H 0.05 2.48 6.20 -2.39 -0.01 2.47 16 45 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -82.06 375.42 3.98 -78.08 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.37 Total: 25.19 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.93 Total: 15.01 kcal Atomic # 7 Polarization: -133.73 SS G_CDS: -6.05 Total: -139.78 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.07 Total: -27.24 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -82.06 3.98 -78.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752812626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.667 kcal (2) G-P(sol) polarization free energy of solvation -82.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds