Wall clock time and date at job start Tue Mar 31 2020 14:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.88776 * 2 1 4 4 N 1.46500 * 109.47338 * 303.88733 * 3 2 1 5 5 C 1.36939 * 119.99871 * 179.97438 * 4 3 2 6 6 H 1.07993 * 120.00047 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99839 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00000 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99944 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47174 * 89.99802 * 9 7 5 11 11 H 1.48505 * 109.47199 * 209.99564 * 9 7 5 12 12 H 1.48503 * 109.47347 * 329.99733 * 9 7 5 13 13 C 1.55151 * 111.00580 * 123.88598 * 2 1 3 14 14 C 1.54326 * 102.94488 * 82.57092 * 13 2 1 15 15 N 1.47028 * 107.26715 * 22.19344 * 14 13 2 16 16 C 1.34771 * 125.64360 * 181.02828 * 15 14 13 17 17 O 1.21611 * 120.00046 * 180.02562 * 16 15 14 18 18 C 1.47427 * 120.00456 * 0.02562 * 16 15 14 19 19 C 1.41288 * 126.41230 * 359.97438 * 18 16 15 20 20 N 1.30454 * 108.02309 * 180.02562 * 19 18 16 21 21 N 1.39932 * 108.89356 * 0.02562 * 20 19 18 22 22 C 1.46500 * 125.74889 * 179.97438 * 21 20 19 23 23 C 1.52999 * 109.47348 * 305.01924 * 22 21 20 24 24 F 1.39901 * 109.47584 * 180.02562 * 23 22 21 25 25 C 1.34257 * 108.49529 * 359.97438 * 21 20 19 26 26 C 1.47425 * 108.70598 * 1.28584 * 15 14 13 27 27 H 1.09007 * 109.46993 * 296.11339 * 1 2 3 28 28 H 1.08998 * 109.47836 * 56.11178 * 1 2 3 29 29 H 1.08996 * 109.47231 * 176.11867 * 1 2 3 30 30 H 1.09003 * 109.46555 * 63.88145 * 3 2 1 31 31 H 1.09001 * 109.47546 * 183.87914 * 3 2 1 32 32 H 0.97003 * 120.00153 * 359.97438 * 4 3 2 33 33 H 0.97006 * 120.00156 * 179.97438 * 8 7 5 34 34 H 1.08996 * 110.72355 * 324.20506 * 13 2 1 35 35 H 1.08999 * 110.87332 * 201.00309 * 13 2 1 36 36 H 1.08998 * 109.87972 * 262.77792 * 14 13 2 37 37 H 1.09000 * 110.01223 * 141.67971 * 14 13 2 38 38 H 1.08001 * 125.99348 * 0.05610 * 19 18 16 39 39 H 1.08996 * 109.47482 * 65.02017 * 22 21 20 40 40 H 1.09000 * 109.47010 * 185.02192 * 22 21 20 41 41 H 1.09004 * 109.47172 * 300.00416 * 23 22 21 42 42 H 1.09000 * 109.46846 * 60.00168 * 23 22 21 43 43 H 1.08003 * 126.29080 * 180.02562 * 25 21 20 44 44 H 1.09000 * 110.36412 * 94.48333 * 26 15 14 45 45 H 1.08991 * 110.36839 * 216.80674 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 7 1.5301 2.1603 -1.1466 5 6 1.8794 3.4681 -1.3539 6 1 2.5572 3.9605 -0.6725 7 6 1.3631 4.1604 -2.4407 8 7 1.6992 5.4172 -2.6403 9 14 0.1912 3.3084 -3.6197 10 1 -1.2056 3.4970 -3.1520 11 1 0.3421 3.8931 -4.9765 12 1 0.5054 1.8578 -3.6681 13 6 2.0861 -0.8075 1.2024 14 6 2.0285 -2.2644 0.6966 15 7 2.0138 -2.2161 -0.7728 16 6 1.9469 -3.2833 -1.5931 17 8 1.9418 -3.1242 -2.7987 18 6 1.8800 -4.6437 -1.0289 19 6 1.8778 -4.9838 0.3424 20 7 1.8091 -6.2832 0.4359 21 7 1.7654 -6.8285 -0.8520 22 6 1.6858 -8.2552 -1.1752 23 6 2.8371 -8.9975 -0.4939 24 9 2.7615 -10.3598 -0.8029 25 6 1.8087 -5.8238 -1.7416 26 6 2.0907 -0.8073 -1.2002 27 1 -0.3633 0.4524 0.9228 28 1 -0.3635 0.5730 -0.8530 29 1 -0.3633 -1.0253 -0.0696 30 1 1.7823 1.9301 0.9228 31 1 3.1629 1.4034 -0.0695 32 1 0.9216 1.7179 -1.7589 33 1 1.3387 5.9009 -3.3999 34 1 1.4524 -0.6786 2.0798 35 1 3.1129 -0.5166 1.4240 36 1 1.1218 -2.7476 1.0607 37 1 2.9049 -2.8137 1.0407 38 1 1.9242 -4.2897 1.1686 39 1 0.7357 -8.6554 -0.8215 40 1 1.7565 -8.3876 -2.2548 41 1 3.7873 -8.5973 -0.8476 42 1 2.7664 -8.8650 0.5857 43 1 1.7909 -5.9210 -2.8171 44 1 3.1252 -0.5270 -1.3988 45 1 1.4763 -0.6455 -2.0859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754699333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:10 Heat of formation + Delta-G solvation = 17.277147 kcal Electronic energy + Delta-G solvation = -27302.068110 eV Core-core repulsion = 23271.536589 eV Total energy + Delta-G solvation = -4030.531522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.34275 -41.83506 -39.99755 -37.88563 -35.14324 -34.65023 -32.70139 -30.94109 -30.77725 -29.86608 -29.22705 -26.86079 -25.91617 -24.33919 -23.92032 -22.17264 -21.78257 -21.08404 -19.68813 -19.05434 -18.03317 -17.44079 -17.10218 -16.58739 -16.22971 -16.05334 -15.75204 -15.35818 -15.02039 -14.61201 -14.37292 -14.21999 -14.09866 -13.78448 -13.57788 -13.26330 -13.13188 -13.02658 -12.63789 -12.21363 -12.20018 -12.15955 -11.78512 -11.73033 -11.69996 -11.36957 -11.30564 -10.89372 -10.62223 -10.47905 -10.32432 -10.07016 -10.05288 -9.88002 -9.54602 -9.12816 -8.88247 -8.56451 -7.21285 -5.74905 -3.10272 1.14171 1.73380 1.84231 2.98110 3.33158 3.40524 3.44684 3.48816 3.55984 3.89975 4.21514 4.28092 4.35209 4.42650 4.51014 4.59427 4.61821 4.66469 4.81075 4.88649 5.00264 5.13422 5.14982 5.19784 5.34242 5.38106 5.53504 5.58216 5.68848 5.80494 5.90434 5.94820 6.00412 6.08741 6.15719 6.21686 6.29971 6.41849 6.49948 6.62779 6.69637 7.07854 7.54828 8.00838 8.21545 8.44005 9.23019 9.95555 10.14797 11.43420 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.027292 B = 0.002417 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.687022 B =11584.160514 C =12212.693681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 C 0.174 3.826 4 N -0.754 5.754 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.880 3.120 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 C -0.122 4.122 14 C 0.096 3.904 15 N -0.611 5.611 16 C 0.605 3.395 17 O -0.548 6.548 18 C -0.281 4.281 19 C 0.074 3.926 20 N -0.299 5.299 21 N -0.367 5.367 22 C 0.102 3.898 23 C 0.053 3.947 24 F -0.207 7.207 25 C 0.131 3.869 26 C 0.121 3.879 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.362 0.638 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.202 0.798 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.190 0.810 44 H 0.075 0.925 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -29.222 8.599 30.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 C 0.047 3.953 4 N -0.401 5.401 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.710 3.290 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.201 1.201 13 C -0.160 4.160 14 C -0.027 4.027 15 N -0.344 5.344 16 C 0.395 3.605 17 O -0.427 6.427 18 C -0.296 4.296 19 C -0.113 4.113 20 N -0.119 5.119 21 N -0.146 5.146 22 C -0.020 4.020 23 C -0.003 4.003 24 F -0.188 7.188 25 C -0.020 4.020 26 C -0.001 4.001 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.195 0.805 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.219 0.781 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.207 0.793 44 H 0.093 0.907 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.441 -30.174 8.690 31.404 hybrid contribution -0.837 0.152 -1.505 1.729 sum -0.396 -30.022 7.185 30.873 Atomic orbital electron populations 1.21688 0.93461 1.00934 1.02792 1.22054 0.96398 0.96141 0.93795 1.20556 0.96047 0.87289 0.91450 1.42759 1.56611 1.11502 1.29210 1.19034 1.23462 0.85863 1.08922 0.89188 1.24655 1.00177 0.95784 0.98440 1.69697 1.48216 1.08965 1.31305 0.86619 0.81699 0.79229 0.81467 1.21071 1.21685 1.20143 1.22729 1.02628 0.92553 0.98093 1.22346 1.00997 0.98669 0.80730 1.48231 1.72913 1.06629 1.06598 1.16818 0.76146 0.82334 0.85210 1.90805 1.51792 1.86020 1.14059 1.20252 1.22277 0.93779 0.93263 1.24839 0.96628 0.92784 0.97081 1.77178 1.25084 1.10407 0.99197 1.48270 1.55737 1.06036 1.04555 1.22319 1.01244 0.75913 1.02517 1.22154 0.99240 0.76317 1.02549 1.92810 1.97599 1.33432 1.94932 1.23003 0.95349 0.86508 0.97104 1.22406 1.01743 0.77994 0.97946 0.92056 0.91910 0.93257 0.94874 0.95197 0.80474 0.93082 0.89657 0.89958 0.91153 0.91130 0.78145 0.88027 0.86993 0.89912 0.88922 0.79272 0.90705 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.42 37.16 0.31 -1.53 16 2 C -0.08 -1.16 0.63 -152.24 -0.10 -1.26 16 3 C 0.17 3.14 5.25 -4.04 -0.02 3.11 16 4 N -0.75 -17.45 4.98 -59.91 -0.30 -17.74 16 5 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 6 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 7 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 8 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 9 Si 0.88 22.42 27.74 -169.99 -4.71 17.70 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 13 C -0.12 -1.20 5.91 -24.90 -0.15 -1.35 16 14 C 0.10 0.87 4.67 -3.06 -0.01 0.86 16 15 N -0.61 -7.99 3.31 -171.64 -0.57 -8.56 16 16 C 0.61 8.69 7.85 -12.52 -0.10 8.59 16 17 O -0.55 -9.97 17.15 5.27 0.09 -9.88 16 18 C -0.28 -3.11 6.09 -105.07 -0.64 -3.75 16 19 C 0.07 0.68 10.44 -16.98 -0.18 0.50 16 20 N -0.30 -2.80 12.33 30.86 0.38 -2.42 16 21 N -0.37 -2.85 3.65 -60.81 -0.22 -3.07 16 22 C 0.10 0.46 6.94 -4.04 -0.03 0.43 16 23 C 0.05 0.26 7.73 37.16 0.29 0.54 16 24 F -0.21 -1.38 17.36 2.25 0.04 -1.34 16 25 C 0.13 1.17 11.25 -16.56 -0.19 0.99 16 26 C 0.12 1.87 5.62 -2.41 -0.01 1.86 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.04 6.65 -51.93 -0.35 0.69 16 29 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.36 8.31 4.09 -40.82 -0.17 8.15 16 33 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16 34 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 36 H 0.07 0.54 6.83 -51.93 -0.35 0.18 16 37 H 0.07 0.51 6.99 -51.93 -0.36 0.15 16 38 H 0.20 1.36 4.47 -52.49 -0.23 1.13 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 0.26 8.06 -51.93 -0.42 -0.15 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.19 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.07 1.21 7.99 -51.93 -0.41 0.80 16 45 H 0.08 1.44 7.95 -51.93 -0.41 1.03 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -35.90 368.24 -6.55 -42.45 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.50 Total: 3.86 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.08 Total: 2.10 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.07 Total: -60.43 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.90 -6.55 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754699333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.723 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds