Wall clock time and date at job start Tue Mar 31 2020 14:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.88776 * 2 1 4 4 N 1.46500 * 109.47338 * 303.88733 * 3 2 1 5 5 C 1.36939 * 119.99871 * 179.97438 * 4 3 2 6 6 H 1.07993 * 120.00047 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99839 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00000 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99944 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47174 * 89.99802 * 9 7 5 11 11 H 1.48505 * 109.47199 * 209.99564 * 9 7 5 12 12 H 1.48503 * 109.47347 * 329.99733 * 9 7 5 13 13 C 1.55151 * 111.00580 * 123.88598 * 2 1 3 14 14 C 1.54326 * 102.94488 * 82.57092 * 13 2 1 15 15 N 1.47028 * 107.26715 * 22.19344 * 14 13 2 16 16 C 1.34771 * 125.64360 * 181.02828 * 15 14 13 17 17 O 1.21611 * 120.00046 * 180.02562 * 16 15 14 18 18 C 1.47427 * 120.00456 * 0.02562 * 16 15 14 19 19 C 1.41288 * 126.41230 * 359.97438 * 18 16 15 20 20 N 1.30454 * 108.02309 * 180.02562 * 19 18 16 21 21 N 1.39932 * 108.89356 * 0.02562 * 20 19 18 22 22 C 1.46500 * 125.74889 * 179.97438 * 21 20 19 23 23 C 1.52999 * 109.47348 * 305.01924 * 22 21 20 24 24 F 1.39901 * 109.47584 * 180.02562 * 23 22 21 25 25 C 1.34257 * 108.49529 * 359.97438 * 21 20 19 26 26 C 1.47425 * 108.70598 * 1.28584 * 15 14 13 27 27 H 1.09007 * 109.46993 * 296.11339 * 1 2 3 28 28 H 1.08998 * 109.47836 * 56.11178 * 1 2 3 29 29 H 1.08996 * 109.47231 * 176.11867 * 1 2 3 30 30 H 1.09003 * 109.46555 * 63.88145 * 3 2 1 31 31 H 1.09001 * 109.47546 * 183.87914 * 3 2 1 32 32 H 0.97003 * 120.00153 * 359.97438 * 4 3 2 33 33 H 0.97006 * 120.00156 * 179.97438 * 8 7 5 34 34 H 1.08996 * 110.72355 * 324.20506 * 13 2 1 35 35 H 1.08999 * 110.87332 * 201.00309 * 13 2 1 36 36 H 1.08998 * 109.87972 * 262.77792 * 14 13 2 37 37 H 1.09000 * 110.01223 * 141.67971 * 14 13 2 38 38 H 1.08001 * 125.99348 * 0.05610 * 19 18 16 39 39 H 1.08996 * 109.47482 * 65.02017 * 22 21 20 40 40 H 1.09000 * 109.47010 * 185.02192 * 22 21 20 41 41 H 1.09004 * 109.47172 * 300.00416 * 23 22 21 42 42 H 1.09000 * 109.46846 * 60.00168 * 23 22 21 43 43 H 1.08003 * 126.29080 * 180.02562 * 25 21 20 44 44 H 1.09000 * 110.36412 * 94.48333 * 26 15 14 45 45 H 1.08991 * 110.36839 * 216.80674 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 7 1.5301 2.1603 -1.1466 5 6 1.8794 3.4681 -1.3539 6 1 2.5572 3.9605 -0.6725 7 6 1.3631 4.1604 -2.4407 8 7 1.6992 5.4172 -2.6403 9 14 0.1912 3.3084 -3.6197 10 1 -1.2056 3.4970 -3.1520 11 1 0.3421 3.8931 -4.9765 12 1 0.5054 1.8578 -3.6681 13 6 2.0861 -0.8075 1.2024 14 6 2.0285 -2.2644 0.6966 15 7 2.0138 -2.2161 -0.7728 16 6 1.9469 -3.2833 -1.5931 17 8 1.9418 -3.1242 -2.7987 18 6 1.8800 -4.6437 -1.0289 19 6 1.8778 -4.9838 0.3424 20 7 1.8091 -6.2832 0.4359 21 7 1.7654 -6.8285 -0.8520 22 6 1.6858 -8.2552 -1.1752 23 6 2.8371 -8.9975 -0.4939 24 9 2.7615 -10.3598 -0.8029 25 6 1.8087 -5.8238 -1.7416 26 6 2.0907 -0.8073 -1.2002 27 1 -0.3633 0.4524 0.9228 28 1 -0.3635 0.5730 -0.8530 29 1 -0.3633 -1.0253 -0.0696 30 1 1.7823 1.9301 0.9228 31 1 3.1629 1.4034 -0.0695 32 1 0.9216 1.7179 -1.7589 33 1 1.3387 5.9009 -3.3999 34 1 1.4524 -0.6786 2.0798 35 1 3.1129 -0.5166 1.4240 36 1 1.1218 -2.7476 1.0607 37 1 2.9049 -2.8137 1.0407 38 1 1.9242 -4.2897 1.1686 39 1 0.7357 -8.6554 -0.8215 40 1 1.7565 -8.3876 -2.2548 41 1 3.7873 -8.5973 -0.8476 42 1 2.7664 -8.8650 0.5857 43 1 1.7909 -5.9210 -2.8171 44 1 3.1252 -0.5270 -1.3988 45 1 1.4763 -0.6455 -2.0859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754699333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:09 Heat of formation + Delta-G solvation = -7.665785 kcal Electronic energy + Delta-G solvation = -27303.149717 eV Core-core repulsion = 23271.536589 eV Total energy + Delta-G solvation = -4031.613128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.79311 -42.53385 -41.01637 -39.05037 -36.64934 -35.33725 -34.28731 -32.65364 -31.54022 -30.65782 -30.13885 -28.03312 -27.36140 -25.17351 -24.83723 -23.61133 -22.72967 -21.76085 -20.58947 -20.42219 -19.53777 -18.45289 -17.57120 -17.34870 -17.18514 -16.85567 -16.60527 -16.34067 -16.21267 -15.81419 -15.55332 -15.29507 -15.19100 -14.86433 -14.63755 -14.45887 -14.12933 -13.94677 -13.83876 -13.67429 -13.41698 -13.19584 -12.86320 -12.82568 -12.64442 -12.63360 -12.24790 -12.17830 -11.89649 -11.82473 -11.69715 -11.49850 -11.45116 -11.01004 -10.94053 -10.67491 -9.93163 -9.53793 -9.26389 -8.02505 -5.33672 0.41989 1.09973 1.18319 1.35394 1.37754 1.43930 2.01456 2.38709 2.46580 3.11196 3.27972 3.34808 3.55801 3.61074 3.71149 3.75224 3.80424 3.93105 3.97469 4.01544 4.15178 4.22007 4.27712 4.34681 4.37819 4.48318 4.55880 4.67572 4.71488 4.74993 4.83542 4.92943 4.98686 5.08958 5.11621 5.19338 5.27212 5.32238 5.39667 5.47519 5.71417 5.78012 6.22257 6.41650 6.57201 7.09209 7.17242 7.87086 8.03552 9.19127 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.027292 B = 0.002417 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.687022 B =11584.160514 C =12212.693681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.075 4.075 3 C 0.169 3.831 4 N -0.758 5.758 5 C -0.225 4.225 6 H 0.063 0.937 7 C -0.062 4.062 8 N -0.982 5.982 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.297 1.297 12 H -0.263 1.263 13 C -0.111 4.111 14 C 0.091 3.909 15 N -0.609 5.609 16 C 0.600 3.400 17 O -0.601 6.601 18 C -0.307 4.307 19 C 0.082 3.918 20 N -0.313 5.313 21 N -0.359 5.359 22 C 0.097 3.903 23 C 0.057 3.943 24 F -0.217 7.217 25 C 0.139 3.861 26 C 0.122 3.878 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.028 0.972 32 H 0.363 0.637 33 H 0.257 0.743 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.224 0.776 39 H 0.111 0.889 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 -32.386 10.406 34.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.077 4.077 3 C 0.043 3.957 4 N -0.404 5.404 5 C -0.356 4.356 6 H 0.081 0.919 7 C -0.253 4.253 8 N -0.633 5.633 9 Si 0.772 3.228 10 H -0.201 1.201 11 H -0.223 1.223 12 H -0.188 1.188 13 C -0.149 4.149 14 C -0.030 4.030 15 N -0.341 5.341 16 C 0.392 3.608 17 O -0.484 6.484 18 C -0.321 4.321 19 C -0.105 4.105 20 N -0.133 5.133 21 N -0.137 5.137 22 C -0.023 4.023 23 C 0.001 3.999 24 F -0.198 7.198 25 C -0.014 4.014 26 C -0.001 4.001 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.197 0.803 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.240 0.760 39 H 0.129 0.871 40 H 0.154 0.846 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.222 0.778 44 H 0.078 0.922 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.254 -33.414 10.583 35.051 hybrid contribution -0.538 1.069 -1.991 2.323 sum -0.793 -32.345 8.592 33.476 Atomic orbital electron populations 1.21659 0.93135 1.01538 1.02204 1.21915 0.96503 0.93742 0.95506 1.20768 0.95881 0.89405 0.89636 1.42830 1.56701 1.10101 1.30807 1.19065 1.21427 0.87609 1.07523 0.91896 1.25387 1.02732 0.96520 1.00703 1.69859 1.50394 1.10748 1.32302 0.85578 0.79832 0.78664 0.78746 1.20116 1.22335 1.18780 1.22764 1.03450 0.91764 0.96918 1.22663 1.03576 0.98717 0.78026 1.48261 1.72255 1.05208 1.08381 1.17323 0.75190 0.83610 0.84690 1.90766 1.54406 1.86868 1.16322 1.20068 1.25081 0.92460 0.94528 1.25119 0.95667 0.92987 0.96730 1.77165 1.25517 1.10503 1.00077 1.48470 1.54394 1.06927 1.03903 1.22593 1.01543 0.74061 1.04137 1.22134 0.99625 0.75656 1.02450 1.92791 1.97659 1.34345 1.94998 1.23279 0.93796 0.86343 0.97939 1.22183 1.00201 0.80225 0.97502 0.90501 0.94936 0.91681 0.94091 0.95367 0.80317 0.93438 0.86820 0.89152 0.88652 0.88413 0.75980 0.87056 0.84571 0.89432 0.89199 0.77764 0.92190 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.42 71.98 0.61 -2.73 16 2 C -0.08 -1.99 0.63 -50.71 -0.03 -2.02 16 3 C 0.17 5.95 5.25 86.38 0.45 6.41 16 4 N -0.76 -35.17 4.98 -343.45 -1.71 -36.88 16 5 C -0.23 -12.85 10.47 84.03 0.88 -11.97 16 6 H 0.06 3.88 8.06 -2.91 -0.02 3.85 16 7 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 8 N -0.98 -63.68 13.97 21.65 0.30 -63.37 16 9 Si 0.94 47.31 27.74 68.60 1.90 49.21 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 12 H -0.26 -12.43 6.52 99.48 0.65 -11.78 16 13 C -0.11 -1.77 5.91 31.78 0.19 -1.58 16 14 C 0.09 1.32 4.67 86.73 0.40 1.72 16 15 N -0.61 -14.99 3.31 -815.20 -2.70 -17.69 16 16 C 0.60 16.76 7.85 86.66 0.68 17.44 16 17 O -0.60 -22.28 17.15 -4.07 -0.07 -22.35 16 18 C -0.31 -6.16 6.09 -20.15 -0.12 -6.28 16 19 C 0.08 1.25 10.44 85.65 0.89 2.14 16 20 N -0.31 -4.93 12.33 -56.27 -0.69 -5.62 16 21 N -0.36 -4.59 3.65 -346.31 -1.26 -5.86 16 22 C 0.10 0.61 6.94 86.38 0.60 1.21 16 23 C 0.06 0.42 7.73 71.98 0.56 0.98 16 24 F -0.22 -2.49 17.36 44.97 0.78 -1.71 16 25 C 0.14 2.19 11.25 84.28 0.95 3.14 16 26 C 0.12 3.74 5.62 86.93 0.49 4.23 16 27 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.03 1.03 6.65 -2.39 -0.02 1.02 16 29 H 0.06 1.48 7.91 -2.39 -0.02 1.46 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.03 1.02 8.07 -2.39 -0.02 1.00 16 32 H 0.36 16.69 4.09 -92.71 -0.38 16.32 16 33 H 0.26 15.93 8.31 -92.70 -0.77 15.15 16 34 H 0.11 1.26 8.05 -2.39 -0.02 1.24 16 35 H 0.09 1.35 8.04 -2.39 -0.02 1.33 16 36 H 0.10 0.97 6.83 -2.39 -0.02 0.95 16 37 H 0.10 0.96 6.99 -2.39 -0.02 0.94 16 38 H 0.22 2.03 4.47 -2.91 -0.01 2.01 16 39 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.14 0.21 8.06 -2.39 -0.02 0.19 16 41 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.06 1.98 7.99 -2.39 -0.02 1.96 16 45 H 0.04 1.68 7.95 -2.39 -0.02 1.66 16 Total: -1.00 -81.29 368.24 4.13 -77.15 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.57 Total: 17.69 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 7.01 Total: 9.44 kcal Atomic # 7 Polarization: -123.36 SS G_CDS: -6.06 Total: -129.42 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.07 Total: -22.35 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.71 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.90 Total: 49.21 kcal Total: -81.29 4.13 -77.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754699333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.487 kcal (2) G-P(sol) polarization free energy of solvation -81.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds