Wall clock time and date at job start Tue Mar 31 2020 13:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99801 * 2 1 4 4 H 1.48501 * 109.46695 * 239.99421 * 3 2 1 5 5 H 1.48490 * 109.47021 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47037 * 120.00069 * 3 2 1 7 7 C 1.38816 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00192 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47602 * 185.16224 * 10 9 7 12 12 N 1.46504 * 109.54133 * 305.44641 * 11 10 9 13 13 C 1.34776 * 119.99799 * 298.59812 * 12 11 10 14 14 O 1.21284 * 120.00081 * 5.25692 * 13 12 11 15 15 C 1.50698 * 119.99760 * 184.99151 * 13 12 11 16 16 H 1.09002 * 115.56525 * 12.61116 * 15 13 12 17 17 C 1.53188 * 117.52331 * 158.39173 * 15 13 12 18 18 C 1.52143 * 117.52110 * 226.83601 * 15 13 12 19 19 C 1.54042 * 121.44134 * 3.48654 * 18 15 13 20 20 C 1.55182 * 101.82723 * 123.35824 * 19 18 15 21 21 O 1.44444 * 103.63494 * 36.33268 * 20 19 18 22 22 C 1.43997 * 107.04749 * 320.43041 * 21 20 19 23 23 C 1.53182 * 109.61541 * 65.66158 * 11 10 9 24 24 C 1.53094 * 109.16119 * 176.89297 * 23 11 10 25 25 O 1.42894 * 109.41606 * 302.39619 * 24 23 11 26 26 C 1.42899 * 114.10226 * 61.15723 * 25 24 23 27 27 C 1.53099 * 109.41534 * 298.84307 * 26 25 24 28 28 H 0.97003 * 120.00091 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00181 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47162 * 65.16295 * 10 9 7 31 31 H 1.08997 * 109.47239 * 305.15950 * 10 9 7 32 32 H 0.96997 * 120.00390 * 118.59033 * 12 11 10 33 33 H 1.08993 * 117.51993 * 214.84980 * 17 15 13 34 34 H 1.09004 * 117.51776 * 359.93967 * 17 15 13 35 35 H 1.08998 * 110.95631 * 241.49559 * 19 18 15 36 36 H 1.08997 * 110.95536 * 5.22444 * 19 18 15 37 37 H 1.09004 * 110.59097 * 277.79066 * 20 19 18 38 38 H 1.09002 * 110.58945 * 154.86920 * 20 19 18 39 39 H 1.09002 * 109.97296 * 266.93587 * 22 21 20 40 40 H 1.08999 * 110.00299 * 145.68740 * 22 21 20 41 41 H 1.08996 * 109.52645 * 296.80341 * 23 11 10 42 42 H 1.09006 * 109.51800 * 56.99191 * 23 11 10 43 43 H 1.08995 * 109.47718 * 182.41440 * 24 23 11 44 44 H 1.09000 * 109.47735 * 62.37680 * 24 23 11 45 45 H 1.09002 * 109.48818 * 178.85467 * 26 25 24 46 46 H 1.09010 * 109.49016 * 58.82930 * 26 25 24 47 47 H 1.08993 * 109.51765 * 297.69865 * 27 26 25 48 48 H 1.09000 * 109.52106 * 177.50682 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0689 -4.8168 -0.1293 12 7 0.0568 -4.7181 0.9254 13 6 0.4249 -4.7797 2.2204 14 8 1.6006 -4.8207 2.5155 15 6 -0.6243 -4.7915 3.3021 16 1 -1.6463 -4.9634 2.9643 17 6 -0.2258 -5.3576 4.6686 18 6 -0.4231 -3.8585 4.4869 19 6 0.7633 -2.8776 4.5448 20 6 0.0413 -1.5156 4.7230 21 8 -1.0829 -1.8345 5.5719 22 6 -1.5923 -3.1092 5.1368 23 6 0.3876 -4.7608 -1.5001 24 6 -0.5413 -5.9685 -1.6493 25 8 0.2130 -7.1710 -1.4854 26 6 0.8340 -7.3005 -0.2049 27 6 1.8182 -6.1462 0.0024 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 2.6136 -3.7556 0.9332 31 1 2.7522 -3.6755 -0.8396 32 1 -0.8782 -4.6084 0.6916 33 1 -0.9860 -5.9011 5.2297 34 1 0.7948 -5.7223 4.7845 35 1 1.4058 -3.0929 5.3985 36 1 1.3322 -2.8987 3.6154 37 1 -0.3008 -1.1343 3.7608 38 1 0.6976 -0.7948 5.2107 39 1 -2.3907 -2.9624 4.4093 40 1 -1.9666 -3.6726 5.9915 41 1 -0.1934 -3.8421 -1.5808 42 1 1.1445 -4.7843 -2.2842 43 1 -0.9962 -5.9569 -2.6397 44 1 -1.3218 -5.9227 -0.8898 45 1 1.3697 -8.2485 -0.1547 46 1 0.0715 -7.2722 0.5736 47 1 2.6038 -6.1978 -0.7513 48 1 2.2601 -6.2184 0.9961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755099381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:54 Heat of formation + Delta-G solvation = -84.930137 kcal Electronic energy + Delta-G solvation = -30140.581658 eV Core-core repulsion = 26196.785650 eV Total energy + Delta-G solvation = -3943.796008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77763 -39.68298 -38.13170 -36.14162 -35.19118 -33.66771 -31.70623 -31.07419 -30.40583 -30.00444 -27.45407 -26.55609 -24.32462 -23.74482 -23.24039 -22.46947 -21.47997 -20.60921 -19.35193 -19.02960 -17.25242 -17.01227 -16.34012 -15.94125 -15.90000 -15.83229 -15.35505 -14.88920 -14.75251 -14.51239 -14.31052 -13.97193 -13.52197 -13.38693 -13.12526 -12.80238 -12.54937 -12.42648 -12.39228 -12.36361 -12.12126 -11.77922 -11.60657 -11.21186 -11.18135 -10.93355 -10.81672 -10.76938 -10.52537 -10.42027 -10.32011 -10.10503 -9.90375 -9.71502 -9.55556 -9.47226 -9.24663 -8.79094 -8.57337 -6.87053 -5.76495 -3.02727 2.69764 3.32289 3.43727 3.48621 3.49400 3.87745 3.93579 4.08821 4.43628 4.58375 4.70583 4.74623 4.81227 4.99319 5.05075 5.09252 5.12125 5.16033 5.28789 5.40672 5.43355 5.51061 5.58314 5.61238 5.63619 5.72800 5.75958 5.78848 5.83323 5.92285 5.97979 6.06321 6.09315 6.10324 6.22989 6.28295 6.30788 6.42397 6.45112 6.51696 6.86720 7.01415 7.05662 7.24128 7.70989 7.84109 8.42706 8.57860 9.54486 10.11967 10.48143 11.46231 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.007839 B = 0.006842 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.089962 B = 4091.485015 C = 6854.550942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.013 4.013 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.231 4.231 8 H 0.067 0.933 9 N -0.724 5.724 10 C 0.143 3.857 11 C 0.175 3.825 12 N -0.710 5.710 13 C 0.553 3.447 14 O -0.528 6.528 15 C -0.175 4.175 16 H 0.117 0.883 17 C -0.129 4.129 18 C -0.127 4.127 19 C -0.120 4.120 20 C 0.048 3.952 21 O -0.381 6.381 22 C 0.087 3.913 23 C -0.154 4.154 24 C 0.061 3.939 25 O -0.386 6.386 26 C 0.067 3.933 27 C -0.163 4.163 28 H 0.254 0.746 29 H 0.381 0.619 30 H 0.044 0.956 31 H 0.023 0.977 32 H 0.396 0.604 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.078 0.922 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 -14.213 4.923 15.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.208 4.208 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.363 4.363 8 H 0.085 0.915 9 N -0.368 5.368 10 C 0.015 3.985 11 C 0.090 3.910 12 N -0.361 5.361 13 C 0.340 3.660 14 O -0.405 6.405 15 C -0.196 4.196 16 H 0.135 0.865 17 C -0.166 4.166 18 C -0.127 4.127 19 C -0.157 4.157 20 C -0.028 4.028 21 O -0.300 6.300 22 C 0.009 3.991 23 C -0.192 4.192 24 C -0.015 4.015 25 O -0.305 6.305 26 C -0.010 4.010 27 C -0.202 4.202 28 H 0.063 0.937 29 H 0.215 0.785 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.230 0.770 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.336 -14.132 5.140 15.403 hybrid contribution -0.314 1.233 -0.251 1.297 sum -3.650 -12.899 4.889 14.269 Atomic orbital electron populations 1.69627 1.04937 1.25534 1.58284 1.24645 0.95475 0.97352 1.03376 0.86329 0.78576 0.83843 0.77843 1.21420 1.21756 1.21379 1.19158 0.90929 0.84168 1.42024 0.91529 1.42162 1.05536 0.99603 1.89494 1.21084 0.93022 0.85020 0.99360 1.20587 0.88975 0.95466 0.86016 1.45885 1.10510 1.74408 1.05291 1.19278 0.88736 0.75411 0.82587 1.90625 1.18329 1.49174 1.82406 1.22302 0.99860 1.07564 0.89923 0.86467 1.22929 1.03666 0.94472 0.95523 1.22142 0.98700 0.92689 0.99216 1.22651 0.95981 0.92581 1.04471 1.23648 0.86980 0.96823 0.95341 1.88870 1.48367 1.35946 1.56851 1.22482 0.93881 0.84383 0.98306 1.22429 1.00784 0.99420 0.96573 1.22604 0.92964 0.84322 1.01657 1.87892 1.67963 1.40228 1.34402 1.22504 0.95029 0.98381 0.85112 1.22533 0.98988 0.94134 1.04570 0.93653 0.78501 0.93825 0.95898 0.77025 0.87944 0.87300 0.90509 0.87960 0.90745 0.89093 0.91966 0.89723 0.89112 0.89589 0.88860 0.93557 0.89345 0.93504 0.90375 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.90 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.37 9.99 -15.06 -0.15 -6.52 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -17.50 5.17 -59.91 -0.31 -17.81 16 10 C 0.14 2.92 4.89 -4.04 -0.02 2.90 16 11 C 0.18 2.74 0.32 -131.63 -0.04 2.70 16 12 N -0.71 -10.37 3.56 -47.43 -0.17 -10.54 16 13 C 0.55 8.60 6.33 -10.99 -0.07 8.53 16 14 O -0.53 -9.67 11.04 5.55 0.06 -9.61 16 15 C -0.18 -2.24 6.08 -92.11 -0.56 -2.80 16 16 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 17 C -0.13 -1.45 9.83 -27.00 -0.27 -1.72 16 18 C -0.13 -1.72 2.43 -154.60 -0.37 -2.09 16 19 C -0.12 -1.93 6.50 -25.03 -0.16 -2.09 16 20 C 0.05 0.80 7.73 38.31 0.30 1.10 16 21 O -0.38 -6.18 11.53 -35.23 -0.41 -6.59 16 22 C 0.09 1.13 7.50 37.32 0.28 1.41 16 23 C -0.15 -2.22 4.80 -26.59 -0.13 -2.34 16 24 C 0.06 0.74 6.67 37.21 0.25 0.98 16 25 O -0.39 -5.14 10.76 -35.23 -0.38 -5.52 16 26 C 0.07 0.82 6.68 37.21 0.25 1.06 16 27 C -0.16 -2.30 4.74 -26.59 -0.13 -2.43 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.38 9.47 6.66 -40.82 -0.27 9.20 16 30 H 0.04 0.99 6.28 -51.93 -0.33 0.66 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.40 5.11 7.58 -40.82 -0.31 4.80 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 1.34 7.85 -51.93 -0.41 0.93 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.10 1.99 6.01 -51.93 -0.31 1.68 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.45 7.44 -51.93 -0.39 1.07 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.50 7.13 -51.93 -0.37 0.13 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.05 0.56 7.75 -51.92 -0.40 0.16 16 47 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 48 H 0.09 1.44 6.20 -51.93 -0.32 1.12 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -31.40 372.74 -8.53 -39.94 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -7.73 Total: 15.35 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.92 Total: -1.75 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.25 Total: -54.79 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.72 Total: -21.71 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.40 -8.53 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755099381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.995 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds