Wall clock time and date at job start Tue Mar 31 2020 13:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99801 * 2 1 4 4 H 1.48501 * 109.46695 * 239.99421 * 3 2 1 5 5 H 1.48490 * 109.47021 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47037 * 120.00069 * 3 2 1 7 7 C 1.38816 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00192 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47602 * 185.16224 * 10 9 7 12 12 N 1.46504 * 109.54133 * 305.44641 * 11 10 9 13 13 C 1.34776 * 119.99799 * 298.59812 * 12 11 10 14 14 O 1.21284 * 120.00081 * 5.25692 * 13 12 11 15 15 C 1.50698 * 119.99760 * 184.99151 * 13 12 11 16 16 H 1.09002 * 115.56525 * 12.61116 * 15 13 12 17 17 C 1.53188 * 117.52331 * 158.39173 * 15 13 12 18 18 C 1.52143 * 117.52110 * 226.83601 * 15 13 12 19 19 C 1.54042 * 121.44134 * 3.48654 * 18 15 13 20 20 C 1.55182 * 101.82723 * 123.35824 * 19 18 15 21 21 O 1.44444 * 103.63494 * 36.33268 * 20 19 18 22 22 C 1.43997 * 107.04749 * 320.43041 * 21 20 19 23 23 C 1.53182 * 109.61541 * 65.66158 * 11 10 9 24 24 C 1.53094 * 109.16119 * 176.89297 * 23 11 10 25 25 O 1.42894 * 109.41606 * 302.39619 * 24 23 11 26 26 C 1.42899 * 114.10226 * 61.15723 * 25 24 23 27 27 C 1.53099 * 109.41534 * 298.84307 * 26 25 24 28 28 H 0.97003 * 120.00091 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00181 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47162 * 65.16295 * 10 9 7 31 31 H 1.08997 * 109.47239 * 305.15950 * 10 9 7 32 32 H 0.96997 * 120.00390 * 118.59033 * 12 11 10 33 33 H 1.08993 * 117.51993 * 214.84980 * 17 15 13 34 34 H 1.09004 * 117.51776 * 359.93967 * 17 15 13 35 35 H 1.08998 * 110.95631 * 241.49559 * 19 18 15 36 36 H 1.08997 * 110.95536 * 5.22444 * 19 18 15 37 37 H 1.09004 * 110.59097 * 277.79066 * 20 19 18 38 38 H 1.09002 * 110.58945 * 154.86920 * 20 19 18 39 39 H 1.09002 * 109.97296 * 266.93587 * 22 21 20 40 40 H 1.08999 * 110.00299 * 145.68740 * 22 21 20 41 41 H 1.08996 * 109.52645 * 296.80341 * 23 11 10 42 42 H 1.09006 * 109.51800 * 56.99191 * 23 11 10 43 43 H 1.08995 * 109.47718 * 182.41440 * 24 23 11 44 44 H 1.09000 * 109.47735 * 62.37680 * 24 23 11 45 45 H 1.09002 * 109.48818 * 178.85467 * 26 25 24 46 46 H 1.09010 * 109.49016 * 58.82930 * 26 25 24 47 47 H 1.08993 * 109.51765 * 297.69865 * 27 26 25 48 48 H 1.09000 * 109.52106 * 177.50682 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0689 -4.8168 -0.1293 12 7 0.0568 -4.7181 0.9254 13 6 0.4249 -4.7797 2.2204 14 8 1.6006 -4.8207 2.5155 15 6 -0.6243 -4.7915 3.3021 16 1 -1.6463 -4.9634 2.9643 17 6 -0.2258 -5.3576 4.6686 18 6 -0.4231 -3.8585 4.4869 19 6 0.7633 -2.8776 4.5448 20 6 0.0413 -1.5156 4.7230 21 8 -1.0829 -1.8345 5.5719 22 6 -1.5923 -3.1092 5.1368 23 6 0.3876 -4.7608 -1.5001 24 6 -0.5413 -5.9685 -1.6493 25 8 0.2130 -7.1710 -1.4854 26 6 0.8340 -7.3005 -0.2049 27 6 1.8182 -6.1462 0.0024 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 2.6136 -3.7556 0.9332 31 1 2.7522 -3.6755 -0.8396 32 1 -0.8782 -4.6084 0.6916 33 1 -0.9860 -5.9011 5.2297 34 1 0.7948 -5.7223 4.7845 35 1 1.4058 -3.0929 5.3985 36 1 1.3322 -2.8987 3.6154 37 1 -0.3008 -1.1343 3.7608 38 1 0.6976 -0.7948 5.2107 39 1 -2.3907 -2.9624 4.4093 40 1 -1.9666 -3.6726 5.9915 41 1 -0.1934 -3.8421 -1.5808 42 1 1.1445 -4.7843 -2.2842 43 1 -0.9962 -5.9569 -2.6397 44 1 -1.3218 -5.9227 -0.8898 45 1 1.3697 -8.2485 -0.1547 46 1 0.0715 -7.2722 0.5736 47 1 2.6038 -6.1978 -0.7513 48 1 2.2601 -6.2184 0.9961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755099381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:54 Heat of formation + Delta-G solvation = -107.010492 kcal Electronic energy + Delta-G solvation = -30141.539134 eV Core-core repulsion = 26196.785650 eV Total energy + Delta-G solvation = -3944.753484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.97568 -40.82741 -39.30929 -37.43421 -36.49522 -35.43209 -33.21123 -32.26782 -32.02993 -31.26825 -28.57175 -28.13368 -25.67604 -25.14559 -24.49756 -23.74668 -22.99446 -21.68754 -20.50054 -20.30089 -19.25837 -18.18737 -17.53017 -17.09234 -17.01360 -17.00696 -16.80435 -16.27047 -16.04589 -15.94293 -15.56640 -15.30522 -15.13053 -14.91628 -14.48181 -14.21798 -13.90874 -13.66775 -13.62497 -13.52788 -13.24325 -13.14900 -13.08400 -12.84131 -12.78520 -12.39278 -12.31836 -12.16509 -11.97979 -11.95997 -11.64264 -11.45252 -11.34687 -11.03339 -10.99731 -10.70036 -10.62342 -10.36511 -9.86644 -8.93794 -7.95419 -5.20769 1.43106 1.44348 1.50533 1.53153 2.16009 2.53494 2.83130 2.91671 2.96020 3.32776 3.38845 3.57287 3.63703 3.75805 3.78508 3.89912 3.90254 3.99532 4.08384 4.20009 4.24963 4.29115 4.44191 4.46669 4.47944 4.64995 4.71824 4.75644 4.76102 4.77964 4.79386 4.83846 4.85105 4.86045 4.98213 5.02214 5.07373 5.11488 5.14033 5.16583 5.23422 5.46093 5.67602 5.79625 6.24641 6.26306 6.65927 7.34707 7.38233 8.08725 8.37766 9.26566 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.007839 B = 0.006842 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.089962 B = 4091.485015 C = 6854.550942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.062 4.062 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.060 0.940 9 N -0.724 5.724 10 C 0.146 3.854 11 C 0.182 3.818 12 N -0.704 5.704 13 C 0.544 3.456 14 O -0.561 6.561 15 C -0.179 4.179 16 H 0.149 0.851 17 C -0.101 4.101 18 C -0.141 4.141 19 C -0.116 4.116 20 C 0.053 3.947 21 O -0.394 6.394 22 C 0.084 3.916 23 C -0.147 4.147 24 C 0.067 3.933 25 O -0.393 6.393 26 C 0.072 3.928 27 C -0.156 4.156 28 H 0.250 0.750 29 H 0.377 0.623 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.405 0.595 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.056 0.944 47 H 0.076 0.924 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -16.093 5.518 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.255 4.255 3 Si 0.790 3.210 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.078 0.922 9 N -0.368 5.368 10 C 0.018 3.982 11 C 0.096 3.904 12 N -0.356 5.356 13 C 0.333 3.667 14 O -0.440 6.440 15 C -0.200 4.200 16 H 0.166 0.834 17 C -0.138 4.138 18 C -0.142 4.142 19 C -0.154 4.154 20 C -0.023 4.023 21 O -0.313 6.313 22 C 0.008 3.992 23 C -0.186 4.186 24 C -0.010 4.010 25 O -0.312 6.312 26 C -0.004 4.004 27 C -0.195 4.195 28 H 0.059 0.941 29 H 0.210 0.790 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.241 0.759 33 H 0.161 0.839 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.126 0.874 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.867 -16.039 5.724 17.712 hybrid contribution 0.240 1.823 -0.432 1.889 sum -4.627 -14.216 5.292 15.859 Atomic orbital electron populations 1.69750 1.05939 1.25804 1.59274 1.25299 0.96321 1.00072 1.03781 0.85417 0.77466 0.80249 0.77878 1.20703 1.21772 1.21177 1.19424 0.90948 0.85679 1.41433 0.92176 1.42179 1.05351 1.00093 1.89140 1.21100 0.93966 0.85558 0.97563 1.20395 0.88566 0.94193 0.87267 1.45836 1.10750 1.73999 1.04995 1.19869 0.89023 0.74582 0.83274 1.90616 1.20002 1.50526 1.82901 1.22429 1.00408 1.07761 0.89426 0.83371 1.23053 1.04271 0.92376 0.94058 1.22129 0.97635 0.93716 1.00725 1.22490 0.96841 0.93438 1.02631 1.23448 0.87505 0.97415 0.93957 1.88847 1.48046 1.37807 1.56608 1.22726 0.93446 0.83221 0.99816 1.22345 1.00804 1.00146 0.95276 1.22658 0.92365 0.82532 1.03437 1.87897 1.68086 1.40367 1.34834 1.22534 0.94752 0.98050 0.85072 1.22451 0.99364 0.94017 1.03673 0.94102 0.78961 0.96278 0.96680 0.75853 0.83906 0.88506 0.89716 0.91967 0.94208 0.88525 0.91457 0.86370 0.90902 0.90356 0.86986 0.91795 0.87395 0.92617 0.90571 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.76 13.06 21.65 0.28 -56.48 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 3 Si 0.96 46.80 29.55 68.60 2.03 48.82 16 4 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.24 -13.79 9.99 84.04 0.84 -12.95 16 8 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 9 N -0.72 -36.34 5.17 -343.46 -1.78 -38.12 16 10 C 0.15 6.20 4.89 86.38 0.42 6.63 16 11 C 0.18 5.73 0.32 3.72 0.00 5.73 16 12 N -0.70 -20.26 3.56 -422.38 -1.50 -21.76 16 13 C 0.54 16.78 6.33 87.66 0.56 17.34 16 14 O -0.56 -21.11 11.04 -3.04 -0.03 -21.14 16 15 C -0.18 -4.21 6.08 -11.76 -0.07 -4.28 16 16 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 17 C -0.10 -1.96 9.83 30.42 0.30 -1.66 16 18 C -0.14 -3.62 2.43 -52.24 -0.13 -3.75 16 19 C -0.12 -3.84 6.50 31.69 0.21 -3.64 16 20 C 0.05 1.84 7.73 72.73 0.56 2.40 16 21 O -0.39 -12.48 11.53 -148.98 -1.72 -14.20 16 22 C 0.08 2.01 7.50 72.09 0.54 2.55 16 23 C -0.15 -4.18 4.80 30.69 0.15 -4.03 16 24 C 0.07 1.44 6.67 72.01 0.48 1.93 16 25 O -0.39 -9.43 10.76 -148.98 -1.60 -11.03 16 26 C 0.07 1.61 6.68 72.02 0.48 2.09 16 27 C -0.16 -4.33 4.74 30.68 0.15 -4.18 16 28 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.38 19.34 6.66 -92.71 -0.62 18.72 16 30 H 0.02 0.92 6.28 -2.39 -0.01 0.91 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.41 9.95 7.58 -92.71 -0.70 9.25 16 33 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 2.19 7.85 -2.39 -0.02 2.17 16 35 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.06 2.57 6.01 -2.39 -0.01 2.56 16 37 H 0.04 1.62 8.14 -2.38 -0.02 1.61 16 38 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 2.34 7.44 -2.39 -0.02 2.32 16 42 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 1.19 7.13 -2.39 -0.02 1.17 16 45 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.06 1.16 7.75 -2.38 -0.02 1.14 16 47 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.08 2.46 6.20 -2.39 -0.01 2.44 16 Total: -1.00 -70.21 372.74 0.28 -69.92 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -0.34 Total: 42.86 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 4.95 Total: 1.12 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -2.99 Total: -116.36 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -3.36 Total: -46.37 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -70.21 0.28 -69.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755099381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.089 kcal (2) G-P(sol) polarization free energy of solvation -70.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds