Wall clock time and date at job start Tue Mar 31 2020 14:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.43681 * 2 1 4 4 C 1.33654 * 110.90967 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80096 * 180.02562 * 4 3 2 6 6 C 1.36414 * 108.39353 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19000 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00197 * 89.97253 * 7 6 4 9 9 N 1.34778 * 119.99651 * 269.97514 * 7 6 4 10 10 C 1.46498 * 120.00370 * 359.97438 * 9 7 6 11 11 C 1.46501 * 119.99759 * 180.02562 * 9 7 6 12 12 C 1.52998 * 109.47629 * 89.99723 * 11 9 7 13 13 O 1.42898 * 109.46826 * 64.99681 * 12 11 9 14 14 C 1.42900 * 113.99571 * 180.02562 * 13 12 11 15 15 C 1.53010 * 109.47113 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.46684 * 64.99803 * 15 14 13 17 17 C 1.36934 * 119.99895 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99941 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00446 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99713 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00257 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47398 * 89.99755 * 21 19 17 23 23 H 1.48499 * 109.47232 * 210.00302 * 21 19 17 24 24 H 1.48501 * 109.47383 * 330.00095 * 21 19 17 25 25 C 1.34172 * 125.44135 * 179.97438 * 2 1 3 26 26 C 1.50706 * 127.02111 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47362 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46890 * 120.02122 * 1 2 3 29 29 H 1.09001 * 109.47222 * 240.02152 * 1 2 3 30 30 H 1.08998 * 109.47079 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.46613 * 119.97767 * 5 4 3 32 32 H 1.08999 * 109.47072 * 239.97943 * 5 4 3 33 33 H 1.09002 * 109.46598 * 90.00021 * 10 9 7 34 34 H 1.09001 * 109.47074 * 210.00029 * 10 9 7 35 35 H 1.09002 * 109.46960 * 330.00288 * 10 9 7 36 36 H 1.09001 * 109.47247 * 210.00184 * 11 9 7 37 37 H 1.09004 * 109.47243 * 329.99319 * 11 9 7 38 38 H 1.08999 * 109.47273 * 185.00332 * 12 11 9 39 39 H 1.09002 * 109.46893 * 305.00021 * 12 11 9 40 40 H 1.09005 * 109.47662 * 300.00117 * 14 13 12 41 41 H 1.09001 * 109.47277 * 60.00818 * 14 13 12 42 42 H 1.08993 * 109.47241 * 185.00015 * 15 14 13 43 43 H 1.09000 * 109.46503 * 305.00372 * 15 14 13 44 44 H 0.97002 * 120.00801 * 0.02562 * 16 15 14 45 45 H 0.97000 * 120.00334 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.47359 * 270.03118 * 26 25 2 47 47 H 1.09003 * 109.46910 * 30.02795 * 26 25 2 48 48 H 1.08995 * 109.46868 * 150.02195 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0006 5 6 4.7390 1.7204 0.0013 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4108 -1.7462 1.0534 9 7 5.4652 -1.7829 -1.1670 10 6 4.8526 -1.3812 -2.4357 11 6 6.6891 -2.5882 -1.1671 12 6 6.3223 -4.0735 -1.1670 13 8 5.6551 -4.3995 -2.3879 14 6 5.2669 -5.7709 -2.4897 15 6 4.5661 -6.0044 -3.8297 16 7 5.5177 -5.7888 -4.9224 17 6 5.1142 -5.9422 -6.2220 18 1 4.0943 -6.2218 -6.4413 19 6 6.0160 -5.7384 -7.2575 20 7 7.2590 -5.3982 -6.9902 21 14 5.4654 -5.9470 -9.0302 22 1 4.9595 -4.6501 -9.5473 23 1 6.6153 -6.3947 -9.8563 24 1 4.3834 -6.9620 -9.0964 25 6 2.2850 -1.0931 0.0005 26 6 1.8309 -2.5301 0.0017 27 1 -0.3634 1.0277 -0.0005 28 1 -0.3633 -0.5142 -0.8898 29 1 -0.3634 -0.5135 0.8902 30 1 4.3626 2.7433 0.0008 31 1 5.3460 1.5568 0.8918 32 1 5.3473 1.5567 -0.8882 33 1 5.2650 -0.4227 -2.7508 34 1 5.0626 -2.1344 -3.1951 35 1 3.7745 -1.2876 -2.3050 36 1 7.2750 -2.3587 -2.0571 37 1 7.2752 -2.3585 -0.2772 38 1 7.2291 -4.6717 -1.0774 39 1 5.6631 -4.2849 -0.3250 40 1 6.1515 -6.4047 -2.4275 41 1 4.5855 -6.0171 -1.6753 42 1 4.1916 -7.0272 -3.8705 43 1 3.7334 -5.3083 -3.9304 44 1 6.4338 -5.5381 -4.7255 45 1 7.8893 -5.2562 -7.7136 46 1 1.7212 -2.8757 1.0296 47 1 0.8728 -2.6088 -0.5122 48 1 2.5700 -3.1451 -0.5116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755874938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:16 Heat of formation + Delta-G solvation = -60.767109 kcal Electronic energy + Delta-G solvation = -28255.064453 eV Core-core repulsion = 24312.316232 eV Total energy + Delta-G solvation = -3942.748221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.76031 -39.69139 -37.67976 -35.49042 -34.47268 -34.30489 -33.27163 -31.48545 -30.10396 -29.87530 -28.26253 -27.59641 -26.41191 -24.85798 -23.74961 -23.47035 -21.82589 -21.11430 -19.80394 -18.73514 -17.29490 -17.14581 -16.77863 -16.43668 -16.12728 -15.71773 -15.51619 -15.12072 -14.50723 -14.22105 -14.01221 -13.79623 -13.67448 -13.40813 -13.13547 -13.08978 -13.00043 -12.95688 -12.86999 -12.84111 -12.60241 -12.57359 -12.36935 -12.22056 -11.79004 -11.63025 -11.42256 -11.31433 -10.89342 -10.79601 -10.47896 -10.10034 -10.00328 -9.68732 -9.45867 -9.21100 -8.85526 -8.63910 -8.44249 -6.86756 -5.71986 -2.99951 1.44430 2.05337 2.46755 2.57455 3.09931 3.45439 3.50387 3.52128 4.03302 4.23685 4.49794 4.62788 4.67464 4.85256 4.92419 5.08959 5.15350 5.17510 5.19229 5.21932 5.31645 5.38382 5.46471 5.49997 5.52283 5.53564 5.55126 5.60358 5.65670 5.67106 5.74206 5.76201 5.78605 5.88673 5.96173 5.99246 6.10672 6.30253 6.36760 6.51800 6.62625 6.76818 6.94720 7.34610 7.61492 7.72737 8.11731 8.46685 9.58218 10.17040 10.53133 11.50867 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.002902 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.001348 B = 9644.846280 C =10121.294428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.016 4.016 3 O -0.173 6.173 4 C 0.036 3.964 5 C -0.078 4.078 6 C -0.216 4.216 7 C 0.592 3.408 8 O -0.541 6.541 9 N -0.594 5.594 10 C 0.081 3.919 11 C 0.119 3.881 12 C 0.045 3.955 13 O -0.370 6.370 14 C 0.059 3.941 15 C 0.155 3.845 16 N -0.727 5.727 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.144 4.144 26 C -0.085 4.085 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.031 0.969 43 H 0.025 0.975 44 H 0.387 0.613 45 H 0.254 0.746 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 12.838 16.947 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 O -0.070 6.070 4 C -0.015 4.015 5 C -0.134 4.134 6 C -0.220 4.220 7 C 0.379 3.621 8 O -0.419 6.419 9 N -0.326 5.326 10 C -0.062 4.062 11 C -0.004 4.004 12 C -0.033 4.033 13 O -0.289 6.289 14 C -0.018 4.018 15 C 0.028 3.972 16 N -0.372 5.372 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.146 4.146 26 C -0.141 4.141 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.221 0.779 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.211 13.032 17.192 23.458 hybrid contribution 0.145 -0.419 -0.830 0.941 sum -9.066 12.613 16.362 22.561 Atomic orbital electron populations 1.20301 0.84757 1.03939 1.03681 1.21958 0.93727 0.83194 1.07577 1.83653 1.15933 1.35207 1.72217 1.22386 0.83254 0.93249 1.02655 1.20419 0.91715 0.97088 1.04215 1.20907 0.93953 0.93148 1.13996 1.17392 0.82509 0.78753 0.83454 1.90771 1.63608 1.56262 1.31232 1.47729 1.26658 1.51910 1.06311 1.21869 0.98196 1.00765 0.85366 1.21591 0.86120 0.88716 1.03964 1.22847 0.96763 0.95779 0.87908 1.87999 1.77169 1.26819 1.36912 1.22775 0.98155 0.82612 0.98266 1.20678 0.93097 0.97572 0.85878 1.42285 1.10265 1.83627 1.00992 1.19237 0.95524 1.38996 0.83164 0.91306 1.24723 0.95795 1.02669 0.97825 1.69670 1.03288 1.54197 1.30953 0.86204 0.77223 0.77651 0.85202 1.21767 1.21833 1.20824 1.21035 0.89959 0.96506 1.07085 1.20198 1.01553 0.90093 1.02282 0.90554 0.89506 0.89716 0.89983 0.89227 0.89252 0.93096 0.88697 0.91368 0.88958 0.88656 0.92531 0.93600 0.93422 0.94063 0.95147 0.95711 0.77927 0.93616 0.91213 0.91100 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 9.93 36.01 0.36 -0.12 16 2 C -0.02 -0.17 7.28 -35.74 -0.26 -0.43 16 3 O -0.17 -2.03 10.52 7.65 0.08 -1.95 16 4 C 0.04 0.42 7.37 -34.96 -0.26 0.17 16 5 C -0.08 -0.66 10.18 36.01 0.37 -0.29 16 6 C -0.22 -2.91 4.26 -103.28 -0.44 -3.35 16 7 C 0.59 8.81 7.27 -12.54 -0.09 8.72 16 8 O -0.54 -9.55 16.69 5.27 0.09 -9.46 16 9 N -0.59 -8.17 2.84 -182.86 -0.52 -8.69 16 10 C 0.08 1.05 10.08 59.85 0.60 1.66 16 11 C 0.12 1.58 5.81 -4.04 -0.02 1.55 16 12 C 0.05 0.65 6.28 37.16 0.23 0.89 16 13 O -0.37 -6.47 9.11 -35.23 -0.32 -6.79 16 14 C 0.06 1.01 6.07 37.16 0.23 1.23 16 15 C 0.16 3.21 6.65 -4.04 -0.03 3.18 16 16 N -0.73 -18.84 5.55 -59.91 -0.33 -19.18 16 17 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 21 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C -0.14 -1.77 6.14 -102.50 -0.63 -2.40 16 26 C -0.08 -0.91 10.15 36.01 0.37 -0.55 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.45 7.11 -51.93 -0.37 1.08 16 35 H 0.07 0.88 6.69 -51.93 -0.35 0.54 16 36 H 0.09 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.10 1.19 7.42 -51.93 -0.39 0.81 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.39 10.63 7.67 -40.82 -0.31 10.31 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 404.72 15.07 6.10 6.10 Total: -1.00 -34.75 404.72 -7.16 -41.91 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.13 Total: 5.41 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 0.18 Total: 2.85 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.13 Total: -55.55 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.15 Total: -18.19 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.75 -7.16 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755874938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.861 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds