Wall clock time and date at job start Tue Mar 31 2020 14:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.39382 * 2 1 4 4 C 1.54574 * 110.44264 * 237.44486 * 2 1 3 5 5 C 1.54495 * 102.14233 * 268.11059 * 4 2 1 6 6 C 1.53001 * 110.45712 * 225.76830 * 5 4 2 7 7 N 1.46498 * 110.36808 * 103.48986 * 5 4 2 8 8 C 1.34775 * 120.00093 * 183.14122 * 7 5 4 9 9 O 1.21593 * 119.99865 * 354.89229 * 8 7 5 10 10 N 1.34774 * 120.00343 * 175.16219 * 8 7 5 11 11 C 1.46927 * 120.62749 * 4.95012 * 10 8 7 12 12 C 1.53191 * 108.77599 * 126.36599 * 11 10 8 13 13 C 1.53046 * 109.31277 * 54.63587 * 12 11 10 14 14 C 1.53044 * 109.53576 * 298.63508 * 13 12 11 15 15 H 1.09007 * 109.49603 * 301.41256 * 14 13 12 16 16 C 1.50697 * 109.49438 * 181.35264 * 14 13 12 17 17 H 1.08000 * 120.00171 * 359.97438 * 16 14 13 18 18 C 1.37879 * 119.99502 * 180.02562 * 16 14 13 19 19 N 1.31509 * 120.00558 * 359.97438 * 18 16 14 20 20 Si 1.86809 * 119.99719 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47021 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46877 * 119.99862 * 20 18 16 23 23 H 1.48500 * 109.46942 * 239.99646 * 20 18 16 24 24 C 1.46921 * 120.63356 * 184.66575 * 10 8 7 25 25 C 1.51330 * 104.82411 * 344.65245 * 5 4 2 26 26 O 1.20827 * 125.08910 * 177.68452 * 25 5 4 27 27 O 1.34056 * 109.81317 * 357.68478 * 25 5 4 28 28 H 1.08999 * 109.47486 * 299.03648 * 1 2 3 29 29 H 1.09005 * 109.46923 * 59.02876 * 1 2 3 30 30 H 1.08991 * 109.47550 * 179.03041 * 1 2 3 31 31 H 1.09004 * 109.47221 * 180.96495 * 3 2 1 32 32 H 1.09004 * 109.47256 * 300.96776 * 3 2 1 33 33 H 1.09005 * 109.47354 * 60.96722 * 3 2 1 34 34 H 1.08993 * 110.86715 * 149.94929 * 4 2 1 35 35 H 1.08995 * 110.86535 * 26.27073 * 4 2 1 36 36 H 1.08996 * 109.47589 * 298.39442 * 6 5 4 37 37 H 1.08994 * 109.47133 * 58.40277 * 6 5 4 38 38 H 1.09005 * 109.46481 * 178.39560 * 6 5 4 39 39 H 0.96997 * 119.99962 * 3.14620 * 7 5 4 40 40 H 1.09004 * 109.58868 * 246.15181 * 11 10 8 41 41 H 1.09002 * 109.59109 * 6.57919 * 11 10 8 42 42 H 1.09000 * 109.49873 * 174.58593 * 12 11 10 43 43 H 1.08999 * 109.50155 * 294.65107 * 12 11 10 44 44 H 1.08998 * 109.46072 * 58.65311 * 13 12 11 45 45 H 1.09003 * 109.45955 * 178.62931 * 13 12 11 46 46 H 0.97000 * 120.00336 * 180.02562 * 19 18 16 47 47 H 1.09004 * 109.58803 * 353.42477 * 24 10 8 48 48 H 1.09003 * 109.58642 * 113.84835 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0698 -0.7794 -1.2208 5 6 2.2300 -2.2063 -0.6505 6 6 3.5823 -2.7957 -1.0564 7 7 1.1395 -3.0667 -1.1158 8 6 1.0540 -4.3400 -0.6824 9 8 1.9315 -4.8033 0.0203 10 7 -0.0014 -5.1016 -1.0325 11 6 -1.0111 -4.5953 -1.9721 12 6 -1.1706 -5.6031 -3.1147 13 6 -1.4895 -6.9821 -2.5325 14 6 -0.3330 -7.4412 -1.6414 15 1 0.5859 -7.4757 -2.2269 16 6 -0.6331 -8.8133 -1.0952 17 1 -1.5564 -9.3086 -1.3568 18 6 0.2708 -9.4358 -0.2606 19 7 1.3950 -8.8325 0.0584 20 14 -0.1014 -11.1363 0.4171 21 1 -1.4212 -11.5925 -0.0881 22 1 0.9525 -12.0858 -0.0221 23 1 -0.1317 -11.0821 1.9008 24 6 -0.1609 -6.4563 -0.4865 25 6 2.1602 -2.0331 0.8512 26 8 2.2066 -2.9322 1.6570 27 8 2.0393 -0.7327 1.1535 28 1 -0.3634 0.4988 0.8985 29 1 -0.3633 0.5289 -0.8812 30 1 -0.3634 -1.0274 -0.0174 31 1 3.1529 1.4166 -0.0173 32 1 1.6941 1.9590 -0.8812 33 1 1.7223 1.9485 0.8986 34 1 3.0315 -0.3796 -1.5424 35 1 1.3497 -0.7668 -2.0389 36 1 3.6370 -2.8656 -2.1427 37 1 4.3831 -2.1518 -0.6929 38 1 3.6902 -3.7898 -0.6224 39 1 0.4790 -2.7201 -1.7358 40 1 -1.9633 -4.4749 -1.4555 41 1 -0.6872 -3.6353 -2.3742 42 1 -1.9841 -5.2870 -3.7677 43 1 -0.2442 -5.6545 -3.6866 44 1 -2.4029 -6.9241 -1.9407 45 1 -1.6275 -7.6960 -3.3445 46 1 2.0310 -9.2706 0.6452 47 1 0.7237 -6.7239 0.0914 48 1 -1.0424 -6.4908 0.1538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772443938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:55 Heat of formation + Delta-G solvation = -103.303314 kcal Electronic energy + Delta-G solvation = -29883.150428 eV Core-core repulsion = 25938.557699 eV Total energy + Delta-G solvation = -3944.592729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62708 -39.49271 -37.62511 -36.93269 -35.13327 -33.60557 -33.32231 -31.91285 -30.68178 -29.58664 -27.91115 -27.18436 -25.05012 -24.58157 -23.85209 -21.84889 -21.62606 -20.83677 -19.29290 -18.68934 -17.70326 -16.91733 -16.60698 -16.14925 -15.98606 -15.14395 -14.93571 -14.53904 -14.47332 -14.17520 -13.81544 -13.70037 -13.60566 -13.48265 -12.92400 -12.77296 -12.67814 -12.56258 -12.52330 -12.25707 -12.20084 -12.09954 -11.88734 -11.87715 -11.74551 -11.19189 -10.96308 -10.86873 -10.62863 -10.46518 -10.37277 -10.22501 -10.12462 -9.83588 -9.22885 -9.04448 -8.89002 -8.74138 -8.37235 -7.61372 -5.92758 -4.02293 2.11231 3.10345 3.17608 3.35070 3.42929 3.45557 3.67502 3.90134 4.03423 4.20969 4.31707 4.41457 4.49537 4.56891 4.94676 5.12954 5.15477 5.22196 5.31957 5.36162 5.36763 5.39419 5.43043 5.49367 5.59986 5.61390 5.66935 5.78607 5.80851 5.96008 6.15468 6.32093 6.42445 6.58508 6.60732 6.68058 6.79995 6.85470 7.01344 7.06430 7.40358 7.49949 7.72985 7.78149 7.97750 8.11787 8.46180 8.58285 9.01415 9.30045 9.63319 11.11956 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.003622 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.403992 B = 7729.729030 C = 8465.651805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.104 3.896 3 C -0.142 4.142 4 C -0.150 4.150 5 C 0.144 3.856 6 C -0.157 4.157 7 N -0.742 5.742 8 C 0.694 3.306 9 O -0.548 6.548 10 N -0.621 5.621 11 C 0.116 3.884 12 C -0.133 4.133 13 C -0.109 4.109 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.876 5.876 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.130 3.870 25 C 0.466 3.534 26 O -0.401 6.401 27 O -0.345 6.345 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.393 0.607 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.263 0.737 47 H 0.125 0.875 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 22.682 -6.857 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 C -0.199 4.199 4 C -0.187 4.187 5 C 0.054 3.946 6 C -0.215 4.215 7 N -0.406 5.406 8 C 0.395 3.605 9 O -0.421 6.421 10 N -0.359 5.359 11 C -0.009 4.009 12 C -0.171 4.171 13 C -0.147 4.147 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.513 5.513 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C 0.009 3.991 25 C 0.300 3.700 26 O -0.278 6.278 27 O -0.263 6.263 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.231 0.769 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.142 0.858 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.572 21.918 -5.555 22.618 hybrid contribution -0.622 -0.736 -0.108 0.970 sum -1.194 21.182 -5.663 21.958 Atomic orbital electron populations 1.22272 0.92847 1.03645 1.03703 1.23008 0.94623 0.92982 0.82730 1.21863 1.02217 0.92351 1.03445 1.23388 1.04320 0.92917 0.98111 1.21229 0.90909 0.90526 0.91939 1.22154 0.92490 1.04489 1.02331 1.45346 1.30817 1.11847 1.52612 1.16003 0.83240 0.80249 0.80981 1.90994 1.38601 1.71426 1.41108 1.47786 1.23025 1.17791 1.47248 1.21483 0.92362 0.95835 0.91172 1.21942 1.00983 0.97357 0.96816 1.21613 1.00268 0.93573 0.99266 1.18906 0.93348 0.93413 0.92274 0.95385 1.21087 1.04686 1.00625 1.29697 0.92398 1.25061 0.94997 0.97713 0.96257 1.69900 1.08701 1.37430 1.35280 0.86563 0.78209 0.84537 0.78852 1.19848 1.21053 1.20978 1.22103 1.03449 0.75586 0.97934 1.23359 0.73906 0.81363 0.91355 1.90849 1.40646 1.39944 1.56362 1.87107 1.77598 1.21357 1.40237 0.90891 0.90103 0.91585 0.91170 0.90070 0.91057 0.87676 0.88070 0.91228 0.91882 0.88297 0.76907 0.92249 0.92462 0.92401 0.92189 0.93244 0.93089 0.92691 0.85758 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 8.77 37.16 0.33 -0.95 16 2 C 0.10 0.90 1.24 -89.79 -0.11 0.79 16 3 C -0.14 -0.81 8.92 37.16 0.33 -0.48 16 4 C -0.15 -1.18 5.54 -25.12 -0.14 -1.32 16 5 C 0.14 1.93 0.96 -131.88 -0.13 1.80 16 6 C -0.16 -2.18 8.39 37.16 0.31 -1.87 16 7 N -0.74 -10.89 5.05 -52.47 -0.27 -11.15 16 8 C 0.69 14.32 7.67 -86.92 -0.67 13.66 16 9 O -0.55 -13.99 11.69 -16.64 -0.19 -14.19 16 10 N -0.62 -12.66 2.98 -178.76 -0.53 -13.19 16 11 C 0.12 1.75 6.39 -3.71 -0.02 1.73 16 12 C -0.13 -2.08 6.08 -26.61 -0.16 -2.25 16 13 C -0.11 -2.17 5.11 -26.68 -0.14 -2.31 16 14 C 0.04 1.00 2.24 -91.87 -0.21 0.79 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -14.37 8.57 -34.44 -0.30 -14.66 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.78 5.31 -17.82 -0.09 1.68 16 19 N -0.88 -26.22 11.39 55.43 0.63 -25.59 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.13 3.24 5.39 -3.94 -0.02 3.22 16 25 C 0.47 7.93 7.11 36.31 0.26 8.18 16 26 O -0.40 -9.02 15.70 -25.92 -0.41 -9.43 16 27 O -0.34 -4.79 10.48 -38.45 -0.40 -5.20 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.63 7.60 -51.93 -0.39 0.24 16 35 H 0.10 0.55 7.40 -51.93 -0.38 0.17 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.86 6.11 -51.93 -0.32 1.54 16 39 H 0.39 4.38 5.68 -40.82 -0.23 4.15 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.65 5.64 -51.93 -0.29 0.36 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.12 3.67 5.10 -51.93 -0.27 3.41 16 48 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -36.07 371.47 -9.11 -45.18 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.76 Total: 3.26 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -0.76 Total: 8.02 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.17 Total: -49.94 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.00 Total: -28.81 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.07 -9.11 -45.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772443938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.123 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds