Wall clock time and date at job start Tue Mar 31 2020 14:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.39382 * 2 1 4 4 C 1.54574 * 110.44264 * 237.44486 * 2 1 3 5 5 C 1.54495 * 102.14233 * 268.11059 * 4 2 1 6 6 C 1.53001 * 110.45712 * 225.76830 * 5 4 2 7 7 N 1.46498 * 110.36808 * 103.48986 * 5 4 2 8 8 C 1.34775 * 120.00093 * 183.14122 * 7 5 4 9 9 O 1.21593 * 119.99865 * 354.89229 * 8 7 5 10 10 N 1.34774 * 120.00343 * 175.16219 * 8 7 5 11 11 C 1.46927 * 120.62749 * 4.95012 * 10 8 7 12 12 C 1.53191 * 108.77599 * 126.36599 * 11 10 8 13 13 C 1.53046 * 109.31277 * 54.63587 * 12 11 10 14 14 C 1.53044 * 109.53576 * 298.63508 * 13 12 11 15 15 H 1.09007 * 109.49603 * 301.41256 * 14 13 12 16 16 C 1.50697 * 109.49438 * 181.35264 * 14 13 12 17 17 H 1.08000 * 120.00171 * 359.97438 * 16 14 13 18 18 C 1.37879 * 119.99502 * 180.02562 * 16 14 13 19 19 N 1.31509 * 120.00558 * 359.97438 * 18 16 14 20 20 Si 1.86809 * 119.99719 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47021 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46877 * 119.99862 * 20 18 16 23 23 H 1.48500 * 109.46942 * 239.99646 * 20 18 16 24 24 C 1.46921 * 120.63356 * 184.66575 * 10 8 7 25 25 C 1.51330 * 104.82411 * 344.65245 * 5 4 2 26 26 O 1.20827 * 125.08910 * 177.68452 * 25 5 4 27 27 O 1.34056 * 109.81317 * 357.68478 * 25 5 4 28 28 H 1.08999 * 109.47486 * 299.03648 * 1 2 3 29 29 H 1.09005 * 109.46923 * 59.02876 * 1 2 3 30 30 H 1.08991 * 109.47550 * 179.03041 * 1 2 3 31 31 H 1.09004 * 109.47221 * 180.96495 * 3 2 1 32 32 H 1.09004 * 109.47256 * 300.96776 * 3 2 1 33 33 H 1.09005 * 109.47354 * 60.96722 * 3 2 1 34 34 H 1.08993 * 110.86715 * 149.94929 * 4 2 1 35 35 H 1.08995 * 110.86535 * 26.27073 * 4 2 1 36 36 H 1.08996 * 109.47589 * 298.39442 * 6 5 4 37 37 H 1.08994 * 109.47133 * 58.40277 * 6 5 4 38 38 H 1.09005 * 109.46481 * 178.39560 * 6 5 4 39 39 H 0.96997 * 119.99962 * 3.14620 * 7 5 4 40 40 H 1.09004 * 109.58868 * 246.15181 * 11 10 8 41 41 H 1.09002 * 109.59109 * 6.57919 * 11 10 8 42 42 H 1.09000 * 109.49873 * 174.58593 * 12 11 10 43 43 H 1.08999 * 109.50155 * 294.65107 * 12 11 10 44 44 H 1.08998 * 109.46072 * 58.65311 * 13 12 11 45 45 H 1.09003 * 109.45955 * 178.62931 * 13 12 11 46 46 H 0.97000 * 120.00336 * 180.02562 * 19 18 16 47 47 H 1.09004 * 109.58803 * 353.42477 * 24 10 8 48 48 H 1.09003 * 109.58642 * 113.84835 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0698 -0.7794 -1.2208 5 6 2.2300 -2.2063 -0.6505 6 6 3.5823 -2.7957 -1.0564 7 7 1.1395 -3.0667 -1.1158 8 6 1.0540 -4.3400 -0.6824 9 8 1.9315 -4.8033 0.0203 10 7 -0.0014 -5.1016 -1.0325 11 6 -1.0111 -4.5953 -1.9721 12 6 -1.1706 -5.6031 -3.1147 13 6 -1.4895 -6.9821 -2.5325 14 6 -0.3330 -7.4412 -1.6414 15 1 0.5859 -7.4757 -2.2269 16 6 -0.6331 -8.8133 -1.0952 17 1 -1.5564 -9.3086 -1.3568 18 6 0.2708 -9.4358 -0.2606 19 7 1.3950 -8.8325 0.0584 20 14 -0.1014 -11.1363 0.4171 21 1 -1.4212 -11.5925 -0.0881 22 1 0.9525 -12.0858 -0.0221 23 1 -0.1317 -11.0821 1.9008 24 6 -0.1609 -6.4563 -0.4865 25 6 2.1602 -2.0331 0.8512 26 8 2.2066 -2.9322 1.6570 27 8 2.0393 -0.7327 1.1535 28 1 -0.3634 0.4988 0.8985 29 1 -0.3633 0.5289 -0.8812 30 1 -0.3634 -1.0274 -0.0174 31 1 3.1529 1.4166 -0.0173 32 1 1.6941 1.9590 -0.8812 33 1 1.7223 1.9485 0.8986 34 1 3.0315 -0.3796 -1.5424 35 1 1.3497 -0.7668 -2.0389 36 1 3.6370 -2.8656 -2.1427 37 1 4.3831 -2.1518 -0.6929 38 1 3.6902 -3.7898 -0.6224 39 1 0.4790 -2.7201 -1.7358 40 1 -1.9633 -4.4749 -1.4555 41 1 -0.6872 -3.6353 -2.3742 42 1 -1.9841 -5.2870 -3.7677 43 1 -0.2442 -5.6545 -3.6866 44 1 -2.4029 -6.9241 -1.9407 45 1 -1.6275 -7.6960 -3.3445 46 1 2.0310 -9.2706 0.6452 47 1 0.7237 -6.7239 0.0914 48 1 -1.0424 -6.4908 0.1538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772443938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:54 Heat of formation + Delta-G solvation = -128.237445 kcal Electronic energy + Delta-G solvation = -29884.231653 eV Core-core repulsion = 25938.557699 eV Total energy + Delta-G solvation = -3945.673954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.72658 -40.98901 -38.93022 -38.50170 -36.46509 -35.34234 -34.35653 -33.58968 -32.03428 -31.29146 -28.44534 -28.00624 -27.04091 -26.10342 -25.02722 -23.45227 -22.60259 -22.23613 -20.76422 -20.01719 -19.18367 -18.35521 -17.96601 -17.83029 -17.05858 -16.67194 -16.40102 -16.12890 -15.70778 -15.33094 -15.18773 -15.11711 -14.75676 -14.50944 -14.31733 -14.30733 -13.96219 -13.72648 -13.53490 -13.47887 -13.30671 -13.04938 -13.00336 -12.92589 -12.68771 -12.62506 -12.52157 -12.28501 -12.20986 -12.07656 -11.82070 -11.61456 -11.47907 -11.40967 -11.02767 -10.92502 -10.70464 -10.51805 -10.13451 -9.27106 -8.09860 -6.27850 0.85588 1.37866 1.39597 1.51686 1.79767 2.10129 2.28182 2.41054 2.86207 2.99378 3.14773 3.20143 3.51023 3.74665 3.93421 4.03146 4.08176 4.17853 4.29601 4.49775 4.57956 4.60030 4.66554 4.68119 4.74737 4.78410 4.82496 4.83177 4.86201 4.93045 4.94542 5.12123 5.20260 5.22000 5.28039 5.28705 5.32694 5.34159 5.43244 5.56300 5.68523 5.81066 5.90461 5.97885 6.14875 6.36302 6.48291 6.86443 7.13457 7.42411 7.75021 8.92731 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.003622 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.403992 B = 7729.729030 C = 8465.651805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 C -0.138 4.138 4 C -0.131 4.131 5 C 0.140 3.860 6 C -0.155 4.155 7 N -0.716 5.716 8 C 0.686 3.314 9 O -0.606 6.606 10 N -0.628 5.628 11 C 0.109 3.891 12 C -0.124 4.124 13 C -0.105 4.105 14 C 0.040 3.960 15 H -0.015 1.015 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.914 5.914 20 Si 0.957 3.043 21 H -0.257 1.257 22 H -0.282 1.282 23 H -0.286 1.286 24 C 0.145 3.855 25 C 0.462 3.538 26 O -0.478 6.478 27 O -0.361 6.361 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.415 0.585 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.257 0.743 47 H 0.071 0.929 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 26.204 -10.178 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.055 3.945 3 C -0.195 4.195 4 C -0.168 4.168 5 C 0.051 3.949 6 C -0.213 4.213 7 N -0.381 5.381 8 C 0.387 3.613 9 O -0.483 6.483 10 N -0.365 5.365 11 C -0.013 4.013 12 C -0.162 4.162 13 C -0.142 4.142 14 C 0.021 3.979 15 H 0.004 0.996 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.552 5.552 20 Si 0.782 3.218 21 H -0.181 1.181 22 H -0.208 1.208 23 H -0.212 1.212 24 C 0.022 3.978 25 C 0.300 3.700 26 O -0.360 6.360 27 O -0.279 6.279 28 H 0.085 0.915 29 H 0.142 0.858 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.256 0.744 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.729 25.535 -8.959 27.198 hybrid contribution 0.036 -1.717 0.931 1.953 sum -2.693 23.819 -8.028 25.279 Atomic orbital electron populations 1.22359 0.91898 1.02765 1.05527 1.23620 0.95540 0.94081 0.81209 1.21944 1.02430 0.90109 1.05009 1.23551 1.07214 0.87679 0.98386 1.21486 0.90028 0.93478 0.89917 1.22109 0.93855 1.01764 1.03534 1.44998 1.31552 1.09606 1.51934 1.16312 0.82551 0.81872 0.80576 1.90981 1.40774 1.73050 1.43508 1.47674 1.24348 1.16273 1.48190 1.21893 0.91772 0.97578 0.90070 1.21898 1.02401 0.94641 0.97235 1.21502 0.97912 0.96454 0.98383 1.18824 0.93687 0.92863 0.92570 0.99639 1.21564 1.04533 1.02047 1.29215 0.91890 1.25937 0.94810 1.01685 0.96803 1.70126 1.09899 1.39033 1.36176 0.85520 0.78633 0.79834 0.77773 1.18106 1.20768 1.21213 1.21425 1.00283 0.78634 0.97438 1.24051 0.71811 0.81591 0.92561 1.90807 1.44082 1.42576 1.58529 1.87087 1.77119 1.20160 1.43489 0.91528 0.85837 0.93807 0.90955 0.86335 0.91562 0.84661 0.84048 0.88638 0.89696 0.94126 0.74356 0.90583 0.87677 0.87461 0.92991 0.92634 0.92940 0.93375 0.91055 0.95512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 8.77 71.98 0.63 -1.30 16 2 C 0.09 1.26 1.24 -10.26 -0.01 1.24 16 3 C -0.14 -0.96 8.92 71.98 0.64 -0.31 16 4 C -0.13 -1.42 5.54 31.64 0.18 -1.25 16 5 C 0.14 3.58 0.96 3.57 0.00 3.58 16 6 C -0.15 -4.28 8.39 71.98 0.60 -3.67 16 7 N -0.72 -19.99 5.05 -438.18 -2.21 -22.21 16 8 C 0.69 29.32 7.67 179.06 1.37 30.69 16 9 O -0.61 -33.67 11.69 16.95 0.20 -33.47 16 10 N -0.63 -26.02 2.98 -837.74 -2.49 -28.52 16 11 C 0.11 2.96 6.39 86.36 0.55 3.51 16 12 C -0.12 -3.48 6.08 30.67 0.19 -3.29 16 13 C -0.10 -4.05 5.11 30.62 0.16 -3.89 16 14 C 0.04 2.08 2.24 -11.61 -0.03 2.05 16 15 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 16 C -0.54 -30.45 8.57 25.60 0.22 -30.23 16 17 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 18 C 0.01 0.41 5.31 84.66 0.45 0.86 16 19 N -0.91 -58.52 11.39 21.45 0.24 -58.28 16 20 Si 0.96 46.15 29.54 68.60 2.03 48.18 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 24 C 0.15 7.68 5.39 86.22 0.46 8.15 16 25 C 0.46 16.28 7.11 71.44 0.51 16.79 16 26 O -0.48 -23.45 15.70 28.81 0.45 -22.99 16 27 O -0.36 -9.89 10.48 -50.08 -0.52 -10.42 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.04 0.71 8.08 -2.39 -0.02 0.69 16 31 H 0.07 0.51 8.13 -2.38 -0.02 0.49 16 32 H 0.12 0.00 8.14 -2.38 -0.02 -0.02 16 33 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.14 0.78 7.60 -2.39 -0.02 0.76 16 35 H 0.14 0.48 7.40 -2.39 -0.02 0.46 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.64 6.11 -2.38 -0.01 1.62 16 39 H 0.41 7.51 5.68 -92.71 -0.53 6.99 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.11 1.83 5.64 -2.39 -0.01 1.82 16 42 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 47 H 0.07 4.59 5.10 -2.38 -0.01 4.58 16 48 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -93.83 371.47 4.05 -89.79 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.43 Total: 14.99 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 5.93 Total: 22.93 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -4.46 Total: -109.00 kcal Atomic # 8 Polarization: -67.01 SS G_CDS: 0.13 Total: -66.88 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -93.83 4.05 -89.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772443938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.451 kcal (2) G-P(sol) polarization free energy of solvation -93.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds