Wall clock time and date at job start Tue Mar 31 2020 15:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47001 * 2 1 4 4 C 1.46504 * 120.00118 * 269.99626 * 3 2 1 5 5 C 1.50697 * 109.47167 * 270.00248 * 4 3 2 6 6 H 1.07998 * 120.00442 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99643 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99832 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00387 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47353 * 89.99658 * 9 7 5 11 11 H 1.48501 * 109.47651 * 209.99931 * 9 7 5 12 12 H 1.48506 * 109.46942 * 329.99936 * 9 7 5 13 13 C 1.34780 * 119.99854 * 90.00688 * 3 2 1 14 14 O 1.21280 * 119.99817 * 180.02562 * 13 3 2 15 15 C 1.50693 * 119.99821 * 359.97438 * 13 3 2 16 16 N 1.46907 * 109.46997 * 174.49069 * 15 13 3 17 17 C 1.46900 * 110.99965 * 293.81257 * 16 15 13 18 18 C 1.52999 * 109.47241 * 289.43869 * 17 16 15 19 19 O 1.42891 * 109.47476 * 67.74277 * 18 17 16 20 20 C 1.42896 * 114.00363 * 180.02562 * 19 18 17 21 21 C 1.46903 * 111.00055 * 169.86175 * 16 15 13 22 22 C 1.50700 * 109.46760 * 190.00207 * 21 16 15 23 23 C 1.34509 * 125.79198 * 90.00507 * 22 21 16 24 24 C 1.41385 * 106.84459 * 179.97438 * 23 22 21 25 25 C 1.34517 * 106.83574 * 359.97438 * 24 23 22 26 26 O 1.34302 * 125.78539 * 269.68853 * 22 21 16 27 27 H 1.08989 * 109.47526 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47160 * 300.00317 * 1 2 3 29 29 H 1.09005 * 109.46826 * 59.99877 * 1 2 3 30 30 H 1.09005 * 109.46847 * 240.00323 * 2 1 3 31 31 H 1.08998 * 109.47053 * 120.00473 * 2 1 3 32 32 H 1.09000 * 109.46763 * 30.00444 * 4 3 2 33 33 H 1.09000 * 109.46671 * 150.00302 * 4 3 2 34 34 H 0.97003 * 120.00157 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47538 * 54.49471 * 15 13 3 36 36 H 1.09002 * 109.47490 * 294.49132 * 15 13 3 37 37 H 1.09003 * 109.47118 * 49.43702 * 17 16 15 38 38 H 1.08994 * 109.47106 * 169.43057 * 17 16 15 39 39 H 1.09002 * 109.46596 * 187.74134 * 18 17 16 40 40 H 1.08995 * 109.46827 * 307.73747 * 18 17 16 41 41 H 1.09004 * 109.47304 * 59.99452 * 20 19 18 42 42 H 1.08995 * 109.47468 * 179.97438 * 20 19 18 43 43 H 1.09003 * 109.47104 * 300.00046 * 20 19 18 44 44 H 1.08997 * 109.47108 * 69.99727 * 21 16 15 45 45 H 1.09003 * 109.46789 * 310.00199 * 21 16 15 46 46 H 1.08004 * 126.57544 * 0.02562 * 23 22 21 47 47 H 1.07995 * 126.58242 * 179.97438 * 24 23 22 48 48 H 1.08000 * 125.78698 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3897 -2.8779 8 7 5.3910 2.1826 -3.2578 9 14 3.0129 3.4352 -3.9292 10 1 3.1163 4.8554 -3.5081 11 1 3.4057 3.3120 -5.3560 12 1 1.6131 2.9692 -3.7592 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1672 15 6 1.9915 1.3062 2.4723 16 7 2.4334 2.1565 3.5857 17 6 3.8912 2.3363 3.5644 18 6 4.5729 1.0214 3.9479 19 8 4.3526 0.0532 2.9203 20 6 4.9505 -1.2181 3.1816 21 6 1.9893 1.6092 4.8746 22 6 2.2419 2.6200 5.9634 23 6 1.3811 3.5705 6.3694 24 6 2.0226 4.2893 7.4042 25 6 3.2369 3.7345 7.5690 26 8 3.3623 2.7208 6.6969 27 1 -0.3634 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 5.7169 2.5725 -4.0841 35 1 2.5470 0.3685 2.4886 36 1 0.9261 1.0992 2.5738 37 1 4.2064 2.6305 2.5632 38 1 4.1720 3.1124 4.2763 39 1 5.6436 1.1883 4.0662 40 1 4.1562 0.6564 4.8865 41 1 4.5412 -1.6295 4.1043 42 1 4.7372 -1.8966 2.3557 43 1 6.0290 -1.0980 3.2844 44 1 2.5429 0.6956 5.0914 45 1 0.9236 1.3855 4.8265 46 1 0.3897 3.7497 5.9801 47 1 1.6158 5.1235 7.9563 48 1 3.9829 4.0485 8.2841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298788297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:51 Heat of formation + Delta-G solvation = -62.115035 kcal Electronic energy + Delta-G solvation = -29233.003784 eV Core-core repulsion = 25290.197113 eV Total energy + Delta-G solvation = -3942.806671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.42775 -41.03824 -39.45477 -37.54305 -36.73395 -34.82745 -33.87905 -32.09311 -31.69803 -31.11375 -29.60728 -27.91127 -27.23497 -25.72028 -24.39320 -23.90975 -22.63401 -22.49176 -20.98295 -19.70784 -19.07237 -18.41548 -17.92739 -17.88520 -17.48679 -17.18237 -16.91364 -16.38810 -16.03862 -15.82447 -15.61209 -15.31031 -15.11309 -14.66578 -14.57329 -14.37083 -13.77303 -13.67879 -13.55922 -13.52389 -13.47530 -13.30699 -13.18130 -13.10000 -12.89013 -12.64466 -12.51817 -12.44093 -12.32228 -12.03631 -11.99441 -11.80214 -11.71053 -10.81138 -10.77570 -10.60211 -10.50347 -9.42876 -9.30109 -9.13015 -8.31720 -6.35484 0.82049 1.31923 1.36605 1.44811 1.75189 1.96298 2.13135 2.32090 2.38556 2.73978 3.02503 3.11763 3.73586 3.81179 3.94025 3.99707 4.16859 4.20507 4.23067 4.33747 4.36659 4.37961 4.42713 4.49347 4.51325 4.54520 4.67325 4.69549 4.79060 4.84361 4.92471 4.97701 4.97975 5.03215 5.06436 5.07872 5.11964 5.27743 5.43740 5.51038 5.66511 5.74104 5.85001 5.98099 6.18331 6.29005 6.30263 6.65958 6.85174 7.25542 7.59535 8.85460 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.003561 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.537283 B = 7862.126973 C = 8076.147719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 N -0.602 5.602 4 C 0.228 3.772 5 C -0.529 4.529 6 H 0.026 0.974 7 C 0.010 3.990 8 N -0.947 5.947 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.506 3.494 14 O -0.584 6.584 15 C 0.041 3.959 16 N -0.525 5.525 17 C 0.061 3.939 18 C 0.029 3.971 19 O -0.406 6.406 20 C 0.023 3.977 21 C 0.132 3.868 22 C -0.022 4.022 23 C -0.203 4.203 24 C -0.230 4.230 25 C -0.044 4.044 26 O -0.192 6.192 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.013 0.987 34 H 0.267 0.733 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.039 0.961 44 H 0.068 0.932 45 H 0.128 0.872 46 H 0.153 0.847 47 H 0.164 0.836 48 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 -6.975 22.082 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.334 5.334 4 C 0.106 3.894 5 C -0.568 4.568 6 H 0.045 0.955 7 C -0.188 4.188 8 N -0.587 5.587 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.295 3.705 14 O -0.464 6.464 15 C -0.089 4.089 16 N -0.248 5.248 17 C -0.067 4.067 18 C -0.048 4.048 19 O -0.326 6.326 20 C -0.072 4.072 21 C 0.005 3.995 22 C -0.072 4.072 23 C -0.223 4.223 24 C -0.249 4.249 25 C -0.111 4.111 26 O -0.089 6.089 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.146 0.854 46 H 0.171 0.829 47 H 0.182 0.818 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.024 -6.064 21.664 24.629 hybrid contribution 0.916 0.188 -0.578 1.099 sum -9.108 -5.876 21.086 23.709 Atomic orbital electron populations 1.22159 0.93866 1.03608 1.02115 1.21721 0.95583 0.81291 1.03570 1.48003 1.64698 1.15051 1.05646 1.19218 0.94624 0.92804 0.82773 1.21566 0.97095 1.31681 1.06427 0.95517 1.25837 0.96698 0.97239 0.98979 1.70059 1.17414 1.46798 1.24447 0.85733 0.80551 0.78957 0.77803 1.20430 1.19904 1.16169 1.21090 0.76736 0.86419 0.86275 1.90609 1.47287 1.20630 1.87826 1.22292 1.03718 0.95914 0.86965 1.61795 1.12155 1.49047 1.01839 1.22150 0.87086 0.95312 1.02188 1.23314 1.00224 0.89858 0.91442 1.87952 1.75479 1.23170 1.45996 1.22924 0.97323 0.84464 1.02524 1.20684 1.03180 0.92329 0.83267 1.22329 0.85626 1.02129 0.97076 1.21847 1.02412 0.97664 1.00383 1.22164 0.96132 1.04443 1.02163 1.24713 1.00348 0.89619 0.96410 1.83997 1.37975 1.45925 1.40999 0.88710 0.91817 0.93635 0.91423 0.88969 0.93644 0.96843 0.92403 0.87587 0.85601 0.92740 0.89712 0.92908 0.90498 0.91812 0.89154 0.94184 0.91389 0.85372 0.82899 0.81801 0.75048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 10.24 71.98 0.74 -2.82 16 2 C 0.10 3.06 5.95 86.38 0.51 3.58 16 3 N -0.60 -25.43 2.46 -826.15 -2.03 -27.45 16 4 C 0.23 11.62 4.23 85.63 0.36 11.98 16 5 C -0.53 -32.29 9.94 25.60 0.25 -32.03 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.61 5.47 84.65 0.46 1.07 16 8 N -0.95 -61.44 13.96 21.45 0.30 -61.15 16 9 Si 0.95 46.06 27.47 68.60 1.88 47.95 16 10 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 13 C 0.51 21.54 7.16 87.65 0.63 22.17 16 14 O -0.58 -30.94 14.29 -3.03 -0.04 -30.99 16 15 C 0.04 1.20 3.89 85.55 0.33 1.53 16 16 N -0.52 -15.50 4.40 -905.35 -3.99 -19.49 16 17 C 0.06 2.02 5.27 86.30 0.45 2.48 16 18 C 0.03 0.79 5.70 71.98 0.41 1.20 16 19 O -0.41 -11.90 7.57 -148.98 -1.13 -13.03 16 20 C 0.02 0.50 11.01 113.37 1.25 1.75 16 21 C 0.13 2.75 5.13 85.56 0.44 3.18 16 22 C -0.02 -0.49 5.89 24.83 0.15 -0.35 16 23 C -0.20 -4.47 10.81 22.19 0.24 -4.23 16 24 C -0.23 -4.37 10.91 22.19 0.24 -4.13 16 25 C -0.04 -0.78 12.09 66.97 0.81 0.03 16 26 O -0.19 -4.33 10.28 -2.52 -0.03 -4.35 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.28 7.39 -2.39 -0.02 1.27 16 29 H 0.04 1.14 8.14 -2.38 -0.02 1.13 16 30 H 0.07 2.23 8.07 -2.38 -0.02 2.21 16 31 H 0.09 2.35 6.29 -2.39 -0.02 2.33 16 32 H 0.05 2.13 7.13 -2.39 -0.02 2.12 16 33 H 0.01 0.74 6.85 -2.39 -0.02 0.73 16 34 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 35 H 0.11 2.99 3.96 -2.39 -0.01 2.98 16 36 H 0.13 2.80 7.18 -2.39 -0.02 2.78 16 37 H 0.05 2.41 5.99 -2.39 -0.01 2.39 16 38 H 0.08 2.75 7.19 -2.39 -0.02 2.73 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.67 5.75 -2.39 -0.01 1.66 16 41 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 1.25 5.69 -2.39 -0.01 1.24 16 45 H 0.13 1.99 7.93 -2.39 -0.02 1.98 16 46 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 47 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 48 H 0.23 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -84.47 383.68 3.15 -81.32 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.89 Total: 21.78 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 7.28 Total: 5.41 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -5.71 Total: -108.09 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -1.20 Total: -48.37 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.95 kcal Total: -84.47 3.15 -81.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298788297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.205 kcal (2) G-P(sol) polarization free energy of solvation -84.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds