Wall clock time and date at job start Tue Mar 31 2020 15:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47443 * 2 1 4 4 O 1.42900 * 109.46899 * 119.99951 * 2 1 3 5 5 C 1.42900 * 113.99954 * 269.99954 * 4 2 1 6 6 C 1.52999 * 109.47071 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.48370 * 54.97829 * 6 5 4 8 8 C 1.53098 * 109.48027 * 174.99939 * 6 5 4 9 9 C 1.53178 * 109.16145 * 177.59036 * 8 6 5 10 10 C 1.53179 * 109.03700 * 303.01585 * 9 8 6 11 11 C 1.53093 * 109.15913 * 56.98274 * 10 9 8 12 12 O 1.42900 * 109.41785 * 302.38766 * 11 10 9 13 13 C 1.50698 * 109.46829 * 239.99673 * 2 1 3 14 14 O 1.21279 * 120.00082 * 256.17196 * 13 2 1 15 15 N 1.34774 * 120.00210 * 76.17786 * 13 2 1 16 16 C 1.46496 * 120.00151 * 185.44895 * 15 13 2 17 17 C 1.50696 * 109.47236 * 89.99719 * 16 15 13 18 18 H 1.08001 * 120.00351 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00113 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47095 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47680 * 119.99804 * 21 19 17 24 24 H 1.48502 * 109.46892 * 240.00074 * 21 19 17 25 25 C 1.46499 * 119.99921 * 5.44444 * 15 13 2 26 26 C 1.53002 * 109.47138 * 85.12350 * 25 15 13 27 27 C 1.47201 * 109.47493 * 180.02562 * 26 25 15 28 28 N 5.31705 * 95.46926 * 332.88943 * 2 1 3 29 29 H 1.09004 * 109.47017 * 55.16193 * 1 2 3 30 30 H 1.09005 * 109.47118 * 295.16411 * 1 2 3 31 31 H 1.09001 * 109.47667 * 175.16341 * 1 2 3 32 32 H 1.09002 * 109.46730 * 299.99915 * 5 4 2 33 33 H 1.08996 * 109.47295 * 59.99796 * 5 4 2 34 34 H 1.09005 * 109.51912 * 297.49340 * 8 6 5 35 35 H 1.08993 * 109.52406 * 57.62185 * 8 6 5 36 36 H 1.09001 * 109.54361 * 62.88844 * 9 8 6 37 37 H 1.08997 * 109.54045 * 183.06173 * 9 8 6 38 38 H 1.08996 * 109.51914 * 176.88619 * 10 9 8 39 39 H 1.08995 * 109.52382 * 297.01417 * 10 9 8 40 40 H 1.09002 * 109.47991 * 62.38149 * 11 10 9 41 41 H 1.09009 * 109.47578 * 182.40819 * 11 10 9 42 42 H 1.09003 * 109.47064 * 210.00071 * 16 15 13 43 43 H 1.08997 * 109.47242 * 329.99667 * 16 15 13 44 44 H 0.97001 * 120.00010 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.47590 * 205.12300 * 25 15 13 46 46 H 1.09006 * 109.47202 * 325.12594 * 25 15 13 47 47 H 1.09004 * 109.47393 * 300.00524 * 26 25 15 48 48 H 1.09006 * 109.46875 * 60.00044 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7089 -0.6406 3.4788 7 1 3.6077 -1.1829 3.1853 8 6 3.0350 0.2934 4.6473 9 6 3.4863 -0.5429 5.8486 10 6 2.3857 -1.5492 6.1985 11 6 2.0848 -2.4120 4.9702 12 8 1.7010 -1.5703 3.8810 13 6 2.0322 -0.7105 -1.2304 14 8 2.4710 -1.8377 -1.1431 15 7 1.9939 -0.0932 -2.4279 16 6 2.3696 -0.8237 -3.6409 17 6 1.1494 -1.4866 -4.2263 18 1 0.1899 -1.3746 -3.7433 19 6 1.2579 -2.2361 -5.3785 20 7 2.4262 -2.3721 -5.9669 21 14 -0.2547 -3.0572 -6.1045 22 1 -1.4372 -2.7519 -5.2597 23 1 -0.4833 -2.5464 -7.4799 24 1 -0.0461 -4.5268 -6.1505 25 6 1.5765 1.3083 -2.5165 26 6 2.7797 2.2163 -2.2543 27 6 2.3603 3.6245 -2.3427 28 7 2.0368 4.7113 -2.4120 29 1 -0.3633 0.5871 -0.8435 30 1 -0.3633 0.4370 0.9302 31 1 -0.3634 -1.0240 -0.0866 32 1 2.9319 0.9513 2.0450 33 1 1.2538 0.6547 2.5588 34 1 3.8348 0.9747 4.3567 35 1 2.1472 0.8666 4.9142 36 1 4.4026 -1.0772 5.5974 37 1 3.6680 0.1117 6.7010 38 1 2.7211 -2.1857 7.0174 39 1 1.4848 -1.0141 6.4986 40 1 2.9753 -2.9777 4.6963 41 1 1.2725 -3.1015 5.2005 42 1 2.7897 -0.1287 -4.3681 43 1 3.1116 -1.5826 -3.3929 44 1 2.5025 -2.8990 -6.7777 45 1 1.1813 1.5075 -3.5125 46 1 0.8041 1.5050 -1.7730 47 1 3.1751 2.0172 -1.2582 48 1 3.5522 2.0195 -2.9978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343879116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:30 Heat of formation + Delta-G solvation = -109.585001 kcal Electronic energy + Delta-G solvation = -28116.260380 eV Core-core repulsion = 24171.395256 eV Total energy + Delta-G solvation = -3944.865123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.88189 -39.41060 -37.38732 -36.80253 -35.21510 -33.83982 -33.04079 -32.47243 -30.89078 -30.84381 -27.29826 -27.16525 -24.71852 -24.23673 -23.76514 -22.42275 -21.99019 -20.51737 -18.74228 -17.57612 -17.18738 -16.76415 -16.55656 -16.35984 -15.94200 -15.45091 -15.11393 -14.77920 -14.75721 -14.63592 -14.32260 -14.14829 -13.78236 -13.77468 -12.99623 -12.92837 -12.82536 -12.73767 -12.57643 -12.36417 -12.20321 -12.00011 -11.87271 -11.62255 -11.57843 -11.43381 -11.30868 -11.18204 -10.97608 -10.89246 -10.75602 -10.61061 -10.49097 -10.17500 -9.72234 -9.66776 -9.59879 -8.79957 -8.46750 -7.83776 -6.08148 -4.12788 2.68096 2.76958 3.22355 3.27322 3.29159 3.37698 3.42163 3.59553 3.81649 4.25045 4.42454 4.49835 4.54433 4.61096 4.78990 4.86208 4.87206 4.94765 5.04432 5.09221 5.10447 5.17887 5.20517 5.27233 5.31012 5.33246 5.40345 5.44832 5.50308 5.57836 5.61929 5.70296 5.74959 5.79177 5.82969 5.84941 5.99329 6.03446 6.33481 6.87326 7.10305 7.23308 7.37363 7.46097 7.53199 7.88539 8.17769 8.25118 8.85138 9.00018 9.52916 11.00002 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.003180 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.015375 B = 8802.450991 C =10493.711432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.068 3.932 3 H 0.074 0.926 4 O -0.346 6.346 5 C 0.066 3.934 6 C 0.093 3.907 7 H 0.069 0.931 8 C -0.149 4.149 9 C -0.121 4.121 10 C -0.157 4.157 11 C 0.059 3.941 12 O -0.367 6.367 13 C 0.512 3.488 14 O -0.511 6.511 15 N -0.596 5.596 16 C 0.245 3.755 17 C -0.529 4.529 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.897 3.103 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.111 3.889 26 C -0.052 4.052 27 C 0.217 3.783 28 N -0.444 5.444 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.036 0.964 43 H 0.048 0.952 44 H 0.263 0.737 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.104 0.896 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 7.580 20.866 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.007 3.993 3 H 0.092 0.908 4 O -0.264 6.264 5 C -0.011 4.011 6 C 0.035 3.965 7 H 0.087 0.913 8 C -0.186 4.186 9 C -0.159 4.159 10 C -0.195 4.195 11 C -0.018 4.018 12 O -0.285 6.285 13 C 0.297 3.703 14 O -0.385 6.385 15 N -0.329 5.329 16 C 0.126 3.874 17 C -0.568 4.568 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.015 4.015 26 C -0.094 4.094 27 C -0.101 4.101 28 N -0.121 5.121 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.122 0.878 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.149 8.260 20.554 22.181 hybrid contribution -0.468 -0.541 -0.313 0.781 sum 0.681 7.719 20.241 21.673 Atomic orbital electron populations 1.22226 0.93787 1.04269 1.02409 1.22077 0.95328 0.95704 0.86241 0.90779 1.88135 1.86435 1.33393 1.18457 1.22581 1.00142 0.92451 0.85918 1.22050 0.91996 0.90382 0.92029 0.91335 1.22143 1.02325 0.98559 0.95611 1.21564 0.98442 0.97978 0.97891 1.22216 0.99614 0.98892 0.98799 1.22566 1.00911 0.92301 0.85979 1.88033 1.39760 1.50019 1.50721 1.20054 0.79509 0.86969 0.83808 1.90703 1.44191 1.18381 1.85199 1.48152 1.66372 1.10133 1.08294 1.19379 0.96728 0.92083 0.79162 1.21472 0.94841 1.31457 1.09030 0.92233 1.24921 0.96175 0.96109 0.96787 1.69931 1.23144 1.40453 1.19672 0.86461 0.82944 0.79399 0.78742 1.19745 1.21008 1.20878 1.21446 0.93861 0.81548 1.04693 1.19950 1.01556 0.82178 1.05714 1.29084 0.93327 0.94844 0.92895 1.81214 1.08917 1.12740 1.09221 0.90759 0.91707 0.90776 0.91931 0.92466 0.90605 0.90834 0.91626 0.91378 0.90975 0.91107 0.93096 0.88865 0.94596 0.93401 0.92721 0.88362 0.90530 0.87802 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.28 37.16 0.34 -1.91 16 2 C 0.07 1.00 2.29 -27.88 -0.06 0.93 16 3 H 0.07 0.81 5.69 -51.93 -0.30 0.52 16 4 O -0.35 -5.53 9.54 -59.34 -0.57 -6.10 16 5 C 0.07 0.75 5.41 37.16 0.20 0.95 16 6 C 0.09 1.03 2.93 -26.68 -0.08 0.95 16 7 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 8 C -0.15 -1.16 5.42 -26.59 -0.14 -1.31 16 9 C -0.12 -0.85 6.03 -26.55 -0.16 -1.01 16 10 C -0.16 -1.16 6.14 -26.59 -0.16 -1.32 16 11 C 0.06 0.57 6.84 37.21 0.25 0.82 16 12 O -0.37 -4.72 10.37 -40.00 -0.41 -5.13 16 13 C 0.51 10.00 6.92 -10.99 -0.08 9.92 16 14 O -0.51 -12.74 16.13 -13.81 -0.22 -12.96 16 15 N -0.60 -11.06 2.47 -175.07 -0.43 -11.50 16 16 C 0.24 5.84 5.18 -5.20 -0.03 5.81 16 17 C -0.53 -14.15 9.39 -34.44 -0.32 -14.47 16 18 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 21 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.11 1.47 4.98 -4.04 -0.02 1.45 16 26 C -0.05 -0.54 5.84 -29.52 -0.17 -0.71 16 27 C 0.22 2.53 15.43 -20.76 -0.32 2.21 16 28 N -0.44 -6.32 18.54 42.15 0.78 -5.54 16 29 H 0.07 0.89 6.19 -51.93 -0.32 0.57 16 30 H 0.06 0.72 7.79 -51.93 -0.40 0.31 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.06 0.59 7.78 -51.93 -0.40 0.19 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.80 8.14 -51.92 -0.42 0.37 16 42 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 43 H 0.05 1.32 7.35 -51.93 -0.38 0.93 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.10 1.37 8.03 -51.93 -0.42 0.95 16 46 H 0.08 0.86 4.78 -51.93 -0.25 0.61 16 47 H 0.10 0.88 7.01 -51.93 -0.36 0.51 16 48 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -34.78 395.20 -7.90 -42.67 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -7.87 Total: -2.79 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.85 Total: 3.94 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 1.09 Total: -41.87 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -1.20 Total: -24.19 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.78 -7.90 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343879116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.910 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds