Wall clock time and date at job start Tue Mar 31 2020 15:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47443 * 2 1 4 4 O 1.42900 * 109.46899 * 119.99951 * 2 1 3 5 5 C 1.42900 * 113.99954 * 269.99954 * 4 2 1 6 6 C 1.52999 * 109.47071 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.48370 * 54.97829 * 6 5 4 8 8 C 1.53098 * 109.48027 * 174.99939 * 6 5 4 9 9 C 1.53178 * 109.16145 * 177.59036 * 8 6 5 10 10 C 1.53179 * 109.03700 * 303.01585 * 9 8 6 11 11 C 1.53093 * 109.15913 * 56.98274 * 10 9 8 12 12 O 1.42900 * 109.41785 * 302.38766 * 11 10 9 13 13 C 1.50698 * 109.46829 * 239.99673 * 2 1 3 14 14 O 1.21279 * 120.00082 * 256.17196 * 13 2 1 15 15 N 1.34774 * 120.00210 * 76.17786 * 13 2 1 16 16 C 1.46496 * 120.00151 * 185.44895 * 15 13 2 17 17 C 1.50696 * 109.47236 * 89.99719 * 16 15 13 18 18 H 1.08001 * 120.00351 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00113 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47095 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47680 * 119.99804 * 21 19 17 24 24 H 1.48502 * 109.46892 * 240.00074 * 21 19 17 25 25 C 1.46499 * 119.99921 * 5.44444 * 15 13 2 26 26 C 1.53002 * 109.47138 * 85.12350 * 25 15 13 27 27 C 1.47201 * 109.47493 * 180.02562 * 26 25 15 28 28 N 5.31705 * 95.46926 * 332.88943 * 2 1 3 29 29 H 1.09004 * 109.47017 * 55.16193 * 1 2 3 30 30 H 1.09005 * 109.47118 * 295.16411 * 1 2 3 31 31 H 1.09001 * 109.47667 * 175.16341 * 1 2 3 32 32 H 1.09002 * 109.46730 * 299.99915 * 5 4 2 33 33 H 1.08996 * 109.47295 * 59.99796 * 5 4 2 34 34 H 1.09005 * 109.51912 * 297.49340 * 8 6 5 35 35 H 1.08993 * 109.52406 * 57.62185 * 8 6 5 36 36 H 1.09001 * 109.54361 * 62.88844 * 9 8 6 37 37 H 1.08997 * 109.54045 * 183.06173 * 9 8 6 38 38 H 1.08996 * 109.51914 * 176.88619 * 10 9 8 39 39 H 1.08995 * 109.52382 * 297.01417 * 10 9 8 40 40 H 1.09002 * 109.47991 * 62.38149 * 11 10 9 41 41 H 1.09009 * 109.47578 * 182.40819 * 11 10 9 42 42 H 1.09003 * 109.47064 * 210.00071 * 16 15 13 43 43 H 1.08997 * 109.47242 * 329.99667 * 16 15 13 44 44 H 0.97001 * 120.00010 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.47590 * 205.12300 * 25 15 13 46 46 H 1.09006 * 109.47202 * 325.12594 * 25 15 13 47 47 H 1.09004 * 109.47393 * 300.00524 * 26 25 15 48 48 H 1.09006 * 109.46875 * 60.00044 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7089 -0.6406 3.4788 7 1 3.6077 -1.1829 3.1853 8 6 3.0350 0.2934 4.6473 9 6 3.4863 -0.5429 5.8486 10 6 2.3857 -1.5492 6.1985 11 6 2.0848 -2.4120 4.9702 12 8 1.7010 -1.5703 3.8810 13 6 2.0322 -0.7105 -1.2304 14 8 2.4710 -1.8377 -1.1431 15 7 1.9939 -0.0932 -2.4279 16 6 2.3696 -0.8237 -3.6409 17 6 1.1494 -1.4866 -4.2263 18 1 0.1899 -1.3746 -3.7433 19 6 1.2579 -2.2361 -5.3785 20 7 2.4262 -2.3721 -5.9669 21 14 -0.2547 -3.0572 -6.1045 22 1 -1.4372 -2.7519 -5.2597 23 1 -0.4833 -2.5464 -7.4799 24 1 -0.0461 -4.5268 -6.1505 25 6 1.5765 1.3083 -2.5165 26 6 2.7797 2.2163 -2.2543 27 6 2.3603 3.6245 -2.3427 28 7 2.0368 4.7113 -2.4120 29 1 -0.3633 0.5871 -0.8435 30 1 -0.3633 0.4370 0.9302 31 1 -0.3634 -1.0240 -0.0866 32 1 2.9319 0.9513 2.0450 33 1 1.2538 0.6547 2.5588 34 1 3.8348 0.9747 4.3567 35 1 2.1472 0.8666 4.9142 36 1 4.4026 -1.0772 5.5974 37 1 3.6680 0.1117 6.7010 38 1 2.7211 -2.1857 7.0174 39 1 1.4848 -1.0141 6.4986 40 1 2.9753 -2.9777 4.6963 41 1 1.2725 -3.1015 5.2005 42 1 2.7897 -0.1287 -4.3681 43 1 3.1116 -1.5826 -3.3929 44 1 2.5025 -2.8990 -6.7777 45 1 1.1813 1.5075 -3.5125 46 1 0.8041 1.5050 -1.7730 47 1 3.1751 2.0172 -1.2582 48 1 3.5522 2.0195 -2.9978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343879116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:29 Heat of formation + Delta-G solvation = -131.417251 kcal Electronic energy + Delta-G solvation = -28117.207097 eV Core-core repulsion = 24171.395256 eV Total energy + Delta-G solvation = -3945.811841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14600 -40.34391 -38.50847 -37.94591 -36.68287 -34.92136 -34.52037 -33.43522 -32.21302 -31.90533 -29.10659 -27.95113 -25.96026 -25.30808 -25.00308 -23.59820 -23.04785 -21.18672 -20.14542 -18.73299 -18.42022 -18.32156 -17.75811 -17.44744 -16.84700 -16.81950 -16.26269 -16.20516 -15.74668 -15.51814 -15.47563 -15.26703 -14.97797 -14.69728 -14.34635 -14.11408 -13.83468 -13.70748 -13.56069 -13.52154 -13.38124 -13.26142 -13.16445 -12.91748 -12.76824 -12.59099 -12.56021 -12.44790 -12.17467 -12.13746 -11.94614 -11.76165 -11.63650 -11.54504 -11.23021 -10.80759 -10.58603 -10.37336 -10.26547 -9.49416 -8.17763 -6.29949 1.39601 1.42604 1.52840 1.63890 1.82379 1.84387 2.04226 2.42763 2.77898 2.85253 3.13466 3.19047 3.66921 3.81666 3.90805 3.95016 3.98580 4.04572 4.05666 4.09389 4.14597 4.22215 4.34462 4.45355 4.47246 4.53367 4.67933 4.70235 4.76743 4.80581 4.84080 4.89823 4.96232 5.02536 5.08445 5.09724 5.14197 5.19328 5.27534 5.34783 5.40396 5.60627 5.86551 6.12953 6.18543 6.36871 6.60352 6.73613 6.80791 7.33840 7.49610 8.89386 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.003180 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.015375 B = 8802.450991 C =10493.711432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.121 0.879 4 O -0.384 6.384 5 C 0.058 3.942 6 C 0.086 3.914 7 H 0.050 0.950 8 C -0.141 4.141 9 C -0.123 4.123 10 C -0.151 4.151 11 C 0.050 3.950 12 O -0.398 6.398 13 C 0.503 3.497 14 O -0.579 6.579 15 N -0.593 5.593 16 C 0.259 3.741 17 C -0.540 4.540 18 H 0.056 0.944 19 C 0.010 3.990 20 N -0.926 5.926 21 Si 0.958 3.042 22 H -0.267 1.267 23 H -0.272 1.272 24 H -0.286 1.286 25 C 0.104 3.896 26 C -0.041 4.041 27 C 0.246 3.754 28 N -0.484 5.484 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.097 0.903 42 H 0.039 0.961 43 H 0.002 0.998 44 H 0.265 0.735 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.133 0.867 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 9.874 22.517 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 H 0.139 0.861 4 O -0.303 6.303 5 C -0.018 4.018 6 C 0.029 3.971 7 H 0.068 0.932 8 C -0.178 4.178 9 C -0.160 4.160 10 C -0.189 4.189 11 C -0.026 4.026 12 O -0.318 6.318 13 C 0.291 3.709 14 O -0.458 6.458 15 N -0.325 5.325 16 C 0.138 3.862 17 C -0.579 4.579 18 H 0.074 0.926 19 C -0.189 4.189 20 N -0.566 5.566 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.213 1.213 25 C -0.020 4.020 26 C -0.082 4.082 27 C -0.071 4.071 28 N -0.162 5.162 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.074 0.926 45 H 0.111 0.889 46 H 0.124 0.876 47 H 0.151 0.849 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.314 10.619 22.219 24.628 hybrid contribution -0.184 -1.295 -0.800 1.533 sum 0.130 9.324 21.419 23.361 Atomic orbital electron populations 1.22240 0.92692 1.02811 1.04648 1.22035 0.95853 0.96682 0.83652 0.86112 1.88114 1.86729 1.35726 1.19701 1.22918 1.01830 0.92562 0.84476 1.22211 0.90894 0.90694 0.93333 0.93204 1.22107 1.03173 0.98115 0.94449 1.21612 0.98078 0.98089 0.98265 1.22168 0.99925 0.98886 0.97926 1.22738 1.00821 0.92630 0.86411 1.87978 1.40918 1.50920 1.51960 1.21078 0.78093 0.86402 0.85287 1.90666 1.47238 1.21558 1.86346 1.48010 1.65807 1.12003 1.06658 1.18847 0.94736 0.91516 0.81080 1.21796 0.95480 1.31575 1.09033 0.92614 1.25739 0.98890 0.96809 0.97427 1.70034 1.25007 1.41348 1.20201 0.85500 0.79697 0.77964 0.78461 1.19099 1.19717 1.21256 1.21712 0.95891 0.78783 1.05596 1.19859 1.00120 0.80519 1.07657 1.29022 0.92102 0.94512 0.91501 1.81265 1.10108 1.14035 1.10783 0.89231 0.88750 0.94044 0.88959 0.91005 0.88848 0.90231 0.91829 0.89525 0.89414 0.91002 0.93728 0.88530 0.94328 0.97993 0.92572 0.88948 0.87649 0.84879 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 9.28 71.98 0.67 -3.40 16 2 C 0.08 2.15 2.29 29.85 0.07 2.22 16 3 H 0.12 2.10 5.69 -2.39 -0.01 2.09 16 4 O -0.38 -11.91 9.54 -125.93 -1.20 -13.11 16 5 C 0.06 1.18 5.41 71.98 0.39 1.57 16 6 C 0.09 1.81 2.93 30.63 0.09 1.90 16 7 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 8 C -0.14 -1.85 5.42 30.69 0.17 -1.68 16 9 C -0.12 -1.45 6.03 30.71 0.19 -1.27 16 10 C -0.15 -1.98 6.14 30.69 0.19 -1.79 16 11 C 0.05 0.96 6.84 72.01 0.49 1.45 16 12 O -0.40 -10.18 10.37 -144.42 -1.50 -11.68 16 13 C 0.50 19.75 6.92 87.66 0.61 20.35 16 14 O -0.58 -30.29 16.13 15.50 0.25 -30.04 16 15 N -0.59 -21.82 2.47 -826.18 -2.04 -23.86 16 16 C 0.26 12.72 5.18 85.63 0.44 13.17 16 17 C -0.54 -29.42 9.39 25.60 0.24 -29.18 16 18 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 19 C 0.01 0.58 5.46 84.66 0.46 1.05 16 20 N -0.93 -54.18 13.29 21.45 0.28 -53.90 16 21 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 25 C 0.10 2.52 4.98 86.38 0.43 2.95 16 26 C -0.04 -0.70 5.84 28.79 0.17 -0.53 16 27 C 0.25 4.98 15.43 89.44 1.38 6.36 16 28 N -0.48 -12.62 18.54 20.01 0.37 -12.25 16 29 H 0.09 1.87 6.19 -2.38 -0.01 1.86 16 30 H 0.09 1.76 7.79 -2.38 -0.02 1.75 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 33 H 0.07 1.24 7.78 -2.39 -0.02 1.22 16 34 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.04 1.85 8.07 -2.39 -0.02 1.84 16 43 H 0.00 0.11 7.35 -2.39 -0.02 0.09 16 44 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.09 2.40 8.03 -2.39 -0.02 2.38 16 46 H 0.11 1.97 4.78 -2.38 -0.01 1.96 16 47 H 0.13 1.63 7.01 -2.39 -0.02 1.61 16 48 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -80.60 395.20 5.12 -75.48 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.94 Total: 10.16 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.98 Total: 13.15 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -1.38 Total: -90.01 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -2.45 Total: -54.83 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -80.60 5.12 -75.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343879116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.937 kcal (2) G-P(sol) polarization free energy of solvation -80.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds