Wall clock time and date at job start Tue Mar 31 2020 14:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47580 * 2 1 4 4 C 1.50705 * 109.47195 * 239.99905 * 2 1 3 5 5 H 1.08000 * 120.00257 * 245.37900 * 4 2 1 6 6 C 1.37875 * 119.99990 * 65.37237 * 4 2 1 7 7 N 1.31513 * 119.99848 * 185.17120 * 6 4 2 8 8 Si 1.86798 * 120.00002 * 5.16901 * 6 4 2 9 9 H 1.48493 * 109.47306 * 270.00350 * 8 6 4 10 10 H 1.48504 * 109.46972 * 30.00005 * 8 6 4 11 11 H 1.48503 * 109.47332 * 149.99690 * 8 6 4 12 12 N 1.46502 * 109.47497 * 119.99891 * 2 1 3 13 13 C 1.34772 * 120.00280 * 274.99986 * 12 2 1 14 14 O 1.21281 * 119.99902 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00343 * 179.97438 * 13 12 2 16 16 C 1.53069 * 119.24935 * 225.23141 * 15 13 12 17 17 C 1.52939 * 60.43508 * 248.82251 * 16 15 13 18 18 H 1.08998 * 119.50379 * 111.74149 * 17 16 15 19 19 C 1.54576 * 118.19984 * 268.38402 * 17 16 15 20 20 C 1.54944 * 102.85836 * 85.42715 * 19 17 16 21 21 N 1.47526 * 117.37017 * 19.16888 * 15 13 12 22 22 C 1.34781 * 127.04688 * 295.06354 * 21 15 13 23 23 O 1.21505 * 119.99518 * 359.97438 * 22 21 15 24 24 O 1.34636 * 120.00312 * 179.97438 * 22 21 15 25 25 C 1.45196 * 116.99927 * 179.97438 * 24 22 21 26 26 C 1.53008 * 109.46922 * 60.00509 * 25 24 22 27 27 C 1.53004 * 109.46926 * 180.02562 * 25 24 22 28 28 C 1.52997 * 109.47367 * 300.00240 * 25 24 22 29 29 H 1.09001 * 109.47403 * 174.98010 * 1 2 3 30 30 H 1.08999 * 109.46930 * 294.97352 * 1 2 3 31 31 H 1.08995 * 109.46839 * 54.97773 * 1 2 3 32 32 H 0.96993 * 120.00376 * 354.99403 * 7 6 4 33 33 H 0.97002 * 119.99800 * 94.99118 * 12 2 1 34 34 H 1.08995 * 117.45853 * 356.44090 * 16 15 13 35 35 H 1.09005 * 117.45122 * 141.23741 * 16 15 13 36 36 H 1.08997 * 110.73258 * 203.76743 * 19 17 16 37 37 H 1.08993 * 110.73637 * 327.08490 * 19 17 16 38 38 H 1.09000 * 110.66399 * 81.01661 * 20 19 17 39 39 H 1.09006 * 110.65959 * 203.95905 * 20 19 17 40 40 H 1.09003 * 109.46937 * 59.99823 * 26 25 24 41 41 H 1.09004 * 109.46640 * 179.97438 * 26 25 24 42 42 H 1.09002 * 109.46891 * 299.99702 * 26 25 24 43 43 H 1.08995 * 109.46971 * 60.00413 * 27 25 24 44 44 H 1.09002 * 109.46981 * 180.02562 * 27 25 24 45 45 H 1.09005 * 109.47045 * 300.00311 * 27 25 24 46 46 H 1.08996 * 109.46957 * 60.00280 * 28 25 24 47 47 H 1.09002 * 109.47110 * 179.97438 * 28 25 24 48 48 H 1.08995 * 109.47285 * 300.00049 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6364 -1.1338 6 6 1.7930 -0.1784 -2.4797 7 7 2.1412 -0.8474 -3.5571 8 14 0.9742 1.4927 -2.6419 9 1 -0.4990 1.3179 -2.7073 10 1 1.3215 2.3304 -1.4659 11 1 1.4492 2.1586 -3.8814 12 7 2.0184 -0.6906 1.1962 13 6 2.1472 -0.0183 2.3571 14 8 1.8591 1.1586 2.4115 15 6 2.6490 -0.7288 3.5877 16 6 1.9304 -0.5122 4.9217 17 6 3.3428 0.0410 4.7270 18 1 3.4954 1.1193 4.6809 19 6 4.5386 -0.8472 5.1401 20 6 4.7692 -1.7219 3.8822 21 7 3.3804 -1.9945 3.3892 22 6 2.8907 -3.1450 2.8862 23 8 1.7276 -3.2106 2.5409 24 8 3.6902 -4.2216 2.7664 25 6 3.0951 -5.4268 2.2172 26 6 2.5752 -5.1418 0.8067 27 6 4.1486 -6.5349 2.1588 28 6 1.9342 -5.8739 3.1079 29 1 -0.3634 -1.0237 -0.0899 30 1 -0.3633 0.4339 0.9316 31 1 -0.3633 0.5898 -0.8416 32 1 2.6309 -1.6804 -3.4736 33 1 2.2490 -1.6318 1.1526 34 1 1.1084 0.2033 4.9394 35 1 1.8152 -1.3760 5.5765 36 1 5.4168 -0.2376 5.3526 37 1 4.2805 -1.4668 5.9989 38 1 5.3435 -1.1757 3.1339 39 1 5.2720 -2.6520 4.1474 40 1 3.4023 -4.8233 0.1721 41 1 2.1288 -6.0467 0.3943 42 1 1.8246 -4.3525 0.8487 43 1 4.5185 -6.7378 3.1638 44 1 3.7019 -7.4395 1.7461 45 1 4.9759 -6.2165 1.5245 46 1 1.1836 -5.0847 3.1499 47 1 1.4872 -6.7784 2.6954 48 1 2.3045 -6.0769 4.1127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370563421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:44 Heat of formation + Delta-G solvation = -77.568652 kcal Electronic energy + Delta-G solvation = -30061.254512 eV Core-core repulsion = 26117.777721 eV Total energy + Delta-G solvation = -3943.476790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15524 -39.94515 -38.05459 -36.71978 -34.93502 -34.23373 -32.79984 -32.28405 -30.78442 -29.46667 -27.48499 -27.32835 -24.98762 -24.55633 -23.67355 -22.45240 -21.18550 -20.06050 -19.70526 -19.08768 -18.39185 -17.32092 -16.66350 -16.52335 -15.87913 -15.53721 -15.08578 -14.71776 -14.31999 -14.12176 -13.89111 -13.74946 -13.62438 -13.27082 -12.96764 -12.83513 -12.59087 -12.56732 -12.35268 -12.15489 -12.08115 -11.96343 -11.85845 -11.68054 -11.45231 -11.40392 -11.30211 -11.22650 -10.75542 -10.50250 -10.44734 -10.31636 -10.03490 -9.93788 -9.74231 -9.44799 -8.81442 -8.68800 -8.51083 -8.08298 -6.50966 -4.17913 1.87872 2.74226 2.88572 3.39233 3.47719 3.60692 3.62379 3.71439 3.91058 4.29665 4.45007 4.51933 4.67397 4.71488 4.85446 4.87203 4.94725 5.03343 5.21587 5.26464 5.35115 5.38552 5.41780 5.50349 5.57076 5.60620 5.62043 5.65124 5.72135 5.74777 5.87235 5.94996 6.04755 6.09078 6.25207 6.39997 6.45752 6.49906 6.53505 6.69830 6.94136 7.36636 7.41118 7.43207 7.70416 8.27014 8.31949 8.54622 8.74057 9.00666 9.52187 10.89537 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010737 B = 0.005417 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.290319 B = 5167.850944 C = 6948.580594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.234 3.766 3 H 0.048 0.952 4 C -0.604 4.604 5 H 0.059 0.941 6 C 0.035 3.965 7 N -0.906 5.906 8 Si 1.052 2.948 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.683 5.683 13 C 0.542 3.458 14 O -0.555 6.555 15 C 0.065 3.935 16 C -0.120 4.120 17 C -0.123 4.123 18 H 0.136 0.864 19 C -0.107 4.107 20 C 0.108 3.892 21 N -0.582 5.582 22 C 0.669 3.331 23 O -0.548 6.548 24 O -0.361 6.361 25 C 0.136 3.864 26 C -0.186 4.186 27 C -0.139 4.139 28 C -0.182 4.182 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.267 0.733 33 H 0.396 0.604 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 -8.064 18.747 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.131 3.869 3 H 0.065 0.935 4 C -0.642 4.642 5 H 0.077 0.923 6 C -0.170 4.170 7 N -0.540 5.540 8 Si 0.881 3.119 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.330 5.330 13 C 0.325 3.675 14 O -0.435 6.435 15 C -0.024 4.024 16 C -0.159 4.159 17 C -0.142 4.142 18 H 0.154 0.846 19 C -0.145 4.145 20 C -0.013 4.013 21 N -0.325 5.325 22 C 0.426 3.574 23 O -0.436 6.436 24 O -0.276 6.276 25 C 0.100 3.900 26 C -0.243 4.243 27 C -0.196 4.196 28 C -0.239 4.239 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.232 0.768 34 H 0.135 0.865 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.620 -6.415 17.383 19.096 hybrid contribution 0.646 -1.856 0.896 2.159 sum 5.265 -8.270 18.278 20.742 Atomic orbital electron populations 1.22366 0.99041 1.00953 0.99082 1.19250 0.90541 0.94560 0.82594 0.93464 1.22131 1.40517 1.10473 0.91090 0.92277 1.25696 0.96223 1.03530 0.91543 1.70827 1.36382 1.16692 1.30108 0.83914 0.76487 0.75570 0.75971 1.20784 1.20007 1.21443 1.46293 1.63282 1.14167 1.09303 1.19118 0.78535 0.86418 0.83415 1.90664 1.53017 1.15203 1.84638 1.21706 1.05011 0.84611 0.91034 1.23450 0.95104 1.02734 0.94610 1.23768 0.92603 1.00051 0.97796 0.84594 1.22438 0.97361 0.97296 0.97405 1.23067 0.82549 1.00322 0.95411 1.47240 1.12374 1.07551 1.65301 1.17463 0.83018 0.79843 0.77125 1.90979 1.16277 1.83078 1.53273 1.86276 1.42986 1.20161 1.78150 1.22117 0.93511 0.80629 0.93749 1.22541 1.03301 1.04226 0.94265 1.21849 0.98511 0.96271 1.02968 1.22511 0.99027 1.03357 0.99045 0.93027 0.94827 0.93219 0.92272 0.76823 0.86467 0.87917 0.88759 0.90130 0.90005 0.89081 0.91845 0.91118 0.88981 0.91711 0.90115 0.91386 0.89268 0.91126 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.07 37.16 0.34 -3.49 16 2 C 0.23 6.12 2.14 -69.08 -0.15 5.97 16 3 H 0.05 1.32 6.08 -51.93 -0.32 1.00 16 4 C -0.60 -17.40 9.10 -34.44 -0.31 -17.71 16 5 H 0.06 1.80 7.95 -52.49 -0.42 1.38 16 6 C 0.04 1.04 5.43 -17.82 -0.10 0.94 16 7 N -0.91 -27.92 13.70 55.43 0.76 -27.16 16 8 Si 1.05 26.39 25.29 -169.99 -4.30 22.09 16 9 H -0.28 -6.70 6.81 56.52 0.38 -6.31 16 10 H -0.27 -6.67 6.36 56.52 0.36 -6.31 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 N -0.68 -16.02 4.95 -54.93 -0.27 -16.29 16 13 C 0.54 11.56 7.63 -10.99 -0.08 11.47 16 14 O -0.56 -13.06 16.51 5.56 0.09 -12.97 16 15 C 0.07 1.05 2.46 -131.85 -0.32 0.72 16 16 C -0.12 -1.54 9.96 -26.73 -0.27 -1.80 16 17 C -0.12 -1.44 6.76 -89.30 -0.60 -2.04 16 18 H 0.14 1.57 8.14 -51.93 -0.42 1.15 16 19 C -0.11 -0.92 6.86 -24.88 -0.17 -1.09 16 20 C 0.11 1.17 7.19 -1.14 -0.01 1.16 16 21 N -0.58 -8.69 3.07 -160.52 -0.49 -9.18 16 22 C 0.67 11.03 6.85 54.06 0.37 11.40 16 23 O -0.55 -10.36 10.68 -19.28 -0.21 -10.56 16 24 O -0.36 -5.23 9.47 -40.31 -0.38 -5.61 16 25 C 0.14 1.73 1.13 -90.61 -0.10 1.63 16 26 C -0.19 -2.73 8.37 37.16 0.31 -2.41 16 27 C -0.14 -1.31 8.85 37.16 0.33 -0.98 16 28 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.19 4.40 -51.93 -0.23 0.96 16 32 H 0.27 8.17 8.72 -40.82 -0.36 7.82 16 33 H 0.40 9.18 5.28 -40.82 -0.22 8.96 16 34 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.66 5.88 -51.93 -0.31 1.35 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -34.21 378.36 -7.31 -41.51 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -7.75 Total: 10.53 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -0.46 Total: 1.94 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.01 Total: -52.63 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.50 Total: -29.14 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -4.30 Total: 22.09 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.21 -7.31 -41.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370563421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.056 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds