Wall clock time and date at job start Tue Mar 31 2020 14:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47580 * 2 1 4 4 C 1.50705 * 109.47195 * 239.99905 * 2 1 3 5 5 H 1.08000 * 120.00257 * 245.37900 * 4 2 1 6 6 C 1.37875 * 119.99990 * 65.37237 * 4 2 1 7 7 N 1.31513 * 119.99848 * 185.17120 * 6 4 2 8 8 Si 1.86798 * 120.00002 * 5.16901 * 6 4 2 9 9 H 1.48493 * 109.47306 * 270.00350 * 8 6 4 10 10 H 1.48504 * 109.46972 * 30.00005 * 8 6 4 11 11 H 1.48503 * 109.47332 * 149.99690 * 8 6 4 12 12 N 1.46502 * 109.47497 * 119.99891 * 2 1 3 13 13 C 1.34772 * 120.00280 * 274.99986 * 12 2 1 14 14 O 1.21281 * 119.99902 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00343 * 179.97438 * 13 12 2 16 16 C 1.53069 * 119.24935 * 225.23141 * 15 13 12 17 17 C 1.52939 * 60.43508 * 248.82251 * 16 15 13 18 18 H 1.08998 * 119.50379 * 111.74149 * 17 16 15 19 19 C 1.54576 * 118.19984 * 268.38402 * 17 16 15 20 20 C 1.54944 * 102.85836 * 85.42715 * 19 17 16 21 21 N 1.47526 * 117.37017 * 19.16888 * 15 13 12 22 22 C 1.34781 * 127.04688 * 295.06354 * 21 15 13 23 23 O 1.21505 * 119.99518 * 359.97438 * 22 21 15 24 24 O 1.34636 * 120.00312 * 179.97438 * 22 21 15 25 25 C 1.45196 * 116.99927 * 179.97438 * 24 22 21 26 26 C 1.53008 * 109.46922 * 60.00509 * 25 24 22 27 27 C 1.53004 * 109.46926 * 180.02562 * 25 24 22 28 28 C 1.52997 * 109.47367 * 300.00240 * 25 24 22 29 29 H 1.09001 * 109.47403 * 174.98010 * 1 2 3 30 30 H 1.08999 * 109.46930 * 294.97352 * 1 2 3 31 31 H 1.08995 * 109.46839 * 54.97773 * 1 2 3 32 32 H 0.96993 * 120.00376 * 354.99403 * 7 6 4 33 33 H 0.97002 * 119.99800 * 94.99118 * 12 2 1 34 34 H 1.08995 * 117.45853 * 356.44090 * 16 15 13 35 35 H 1.09005 * 117.45122 * 141.23741 * 16 15 13 36 36 H 1.08997 * 110.73258 * 203.76743 * 19 17 16 37 37 H 1.08993 * 110.73637 * 327.08490 * 19 17 16 38 38 H 1.09000 * 110.66399 * 81.01661 * 20 19 17 39 39 H 1.09006 * 110.65959 * 203.95905 * 20 19 17 40 40 H 1.09003 * 109.46937 * 59.99823 * 26 25 24 41 41 H 1.09004 * 109.46640 * 179.97438 * 26 25 24 42 42 H 1.09002 * 109.46891 * 299.99702 * 26 25 24 43 43 H 1.08995 * 109.46971 * 60.00413 * 27 25 24 44 44 H 1.09002 * 109.46981 * 180.02562 * 27 25 24 45 45 H 1.09005 * 109.47045 * 300.00311 * 27 25 24 46 46 H 1.08996 * 109.46957 * 60.00280 * 28 25 24 47 47 H 1.09002 * 109.47110 * 179.97438 * 28 25 24 48 48 H 1.08995 * 109.47285 * 300.00049 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6364 -1.1338 6 6 1.7930 -0.1784 -2.4797 7 7 2.1412 -0.8474 -3.5571 8 14 0.9742 1.4927 -2.6419 9 1 -0.4990 1.3179 -2.7073 10 1 1.3215 2.3304 -1.4659 11 1 1.4492 2.1586 -3.8814 12 7 2.0184 -0.6906 1.1962 13 6 2.1472 -0.0183 2.3571 14 8 1.8591 1.1586 2.4115 15 6 2.6490 -0.7288 3.5877 16 6 1.9304 -0.5122 4.9217 17 6 3.3428 0.0410 4.7270 18 1 3.4954 1.1193 4.6809 19 6 4.5386 -0.8472 5.1401 20 6 4.7692 -1.7219 3.8822 21 7 3.3804 -1.9945 3.3892 22 6 2.8907 -3.1450 2.8862 23 8 1.7276 -3.2106 2.5409 24 8 3.6902 -4.2216 2.7664 25 6 3.0951 -5.4268 2.2172 26 6 2.5752 -5.1418 0.8067 27 6 4.1486 -6.5349 2.1588 28 6 1.9342 -5.8739 3.1079 29 1 -0.3634 -1.0237 -0.0899 30 1 -0.3633 0.4339 0.9316 31 1 -0.3633 0.5898 -0.8416 32 1 2.6309 -1.6804 -3.4736 33 1 2.2490 -1.6318 1.1526 34 1 1.1084 0.2033 4.9394 35 1 1.8152 -1.3760 5.5765 36 1 5.4168 -0.2376 5.3526 37 1 4.2805 -1.4668 5.9989 38 1 5.3435 -1.1757 3.1339 39 1 5.2720 -2.6520 4.1474 40 1 3.4023 -4.8233 0.1721 41 1 2.1288 -6.0467 0.3943 42 1 1.8246 -4.3525 0.8487 43 1 4.5185 -6.7378 3.1638 44 1 3.7019 -7.4395 1.7461 45 1 4.9759 -6.2165 1.5245 46 1 1.1836 -5.0847 3.1499 47 1 1.4872 -6.7784 2.6954 48 1 2.3045 -6.0769 4.1127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370563421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:43 Heat of formation + Delta-G solvation = -101.507029 kcal Electronic energy + Delta-G solvation = -30062.292558 eV Core-core repulsion = 26117.777721 eV Total energy + Delta-G solvation = -3944.514836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.34148 -41.17677 -39.59193 -37.91520 -36.87418 -35.33560 -34.56295 -33.74483 -32.09879 -31.08416 -28.43531 -28.32783 -27.02143 -25.99420 -24.69911 -23.80950 -22.38815 -21.64165 -20.99554 -20.66574 -19.81634 -19.17007 -17.90456 -17.72583 -17.27199 -16.90586 -16.41187 -16.15800 -15.65871 -15.50337 -15.38650 -15.09162 -14.80726 -14.70833 -14.43617 -14.29210 -14.12586 -13.80375 -13.60081 -13.48013 -13.39044 -13.21199 -13.03663 -12.93347 -12.90393 -12.56460 -12.54834 -12.35060 -12.18955 -12.04851 -11.78188 -11.70874 -11.58389 -11.44605 -11.15139 -11.05091 -10.88068 -10.77740 -10.02176 -9.90649 -8.88175 -6.56591 0.77546 1.34763 1.37808 1.45982 1.61657 1.64837 2.23435 2.34552 2.44348 2.78939 2.95307 3.34291 3.45624 3.67660 3.69773 3.73949 3.88588 3.89674 4.12489 4.26488 4.34557 4.37562 4.47145 4.53894 4.55567 4.61040 4.62136 4.64076 4.67417 4.70913 4.78423 4.81566 4.84312 4.88224 4.98103 5.06430 5.11438 5.22693 5.25609 5.29812 5.31184 5.36742 5.50594 5.52705 5.87543 6.28049 6.38439 6.69318 7.08382 7.17884 7.27596 8.50958 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010737 B = 0.005417 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.290319 B = 5167.850944 C = 6948.580594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.237 3.763 3 H 0.032 0.968 4 C -0.605 4.605 5 H 0.026 0.974 6 C -0.008 4.008 7 N -0.928 5.928 8 Si 1.085 2.915 9 H -0.257 1.257 10 H -0.264 1.264 11 H -0.279 1.279 12 N -0.695 5.695 13 C 0.536 3.464 14 O -0.583 6.583 15 C 0.024 3.976 16 C -0.107 4.107 17 C -0.090 4.090 18 H 0.140 0.860 19 C -0.091 4.091 20 C 0.099 3.901 21 N -0.582 5.582 22 C 0.661 3.339 23 O -0.581 6.581 24 O -0.358 6.358 25 C 0.129 3.871 26 C -0.184 4.184 27 C -0.132 4.132 28 C -0.175 4.175 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.255 0.745 33 H 0.395 0.605 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.090 0.910 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.620 -8.217 21.567 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.132 3.868 3 H 0.050 0.950 4 C -0.643 4.643 5 H 0.044 0.956 6 C -0.208 4.208 7 N -0.564 5.564 8 Si 0.907 3.093 9 H -0.182 1.182 10 H -0.190 1.190 11 H -0.205 1.205 12 N -0.343 5.343 13 C 0.322 3.678 14 O -0.465 6.465 15 C -0.065 4.065 16 C -0.145 4.145 17 C -0.109 4.109 18 H 0.158 0.842 19 C -0.129 4.129 20 C -0.020 4.020 21 N -0.324 5.324 22 C 0.417 3.583 23 O -0.471 6.471 24 O -0.273 6.273 25 C 0.093 3.907 26 C -0.241 4.241 27 C -0.189 4.189 28 C -0.232 4.232 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.231 0.769 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.108 0.892 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.479 -6.592 20.243 21.984 hybrid contribution 0.435 -1.865 0.018 1.916 sum 5.915 -8.458 20.261 22.739 Atomic orbital electron populations 1.22242 0.97652 1.00787 0.99915 1.18979 0.91552 0.93398 0.82868 0.95034 1.22223 1.39945 1.09348 0.92807 0.95561 1.27020 0.96301 1.06223 0.91238 1.70930 1.37764 1.16747 1.30918 0.83500 0.77216 0.71911 0.76644 1.18186 1.18955 1.20511 1.46271 1.64307 1.14133 1.09639 1.19994 0.77367 0.86312 0.84157 1.90621 1.54120 1.16425 1.85332 1.21567 1.09087 0.86115 0.89739 1.23565 0.95882 1.03269 0.91827 1.24081 0.93212 1.00559 0.93037 0.84200 1.22530 0.96945 0.96770 0.96636 1.23372 0.80512 1.01878 0.96271 1.47388 1.13803 1.06480 1.64729 1.17750 0.82902 0.80637 0.77004 1.90961 1.17838 1.83791 1.54544 1.86289 1.42738 1.20265 1.78002 1.22423 0.95186 0.80852 0.92261 1.22500 1.01704 1.03786 0.96112 1.21871 0.97379 0.95438 1.04196 1.22435 0.97884 1.02990 0.99916 0.93637 0.93715 0.92590 0.93598 0.76943 0.86985 0.85887 0.85475 0.87850 0.90748 0.87009 0.93476 0.89008 0.92941 0.89946 0.87953 0.91776 0.92363 0.89165 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.31 9.07 71.98 0.65 -6.65 16 2 C 0.24 12.73 2.14 44.24 0.09 12.83 16 3 H 0.03 1.80 6.08 -2.39 -0.01 1.79 16 4 C -0.61 -36.37 9.10 25.60 0.23 -36.13 16 5 H 0.03 1.71 7.95 -2.91 -0.02 1.68 16 6 C -0.01 -0.50 5.43 84.65 0.46 -0.04 16 7 N -0.93 -58.85 13.70 21.45 0.29 -58.56 16 8 Si 1.09 53.11 25.29 68.60 1.73 54.84 16 9 H -0.26 -11.54 6.81 99.48 0.68 -10.86 16 10 H -0.26 -12.47 6.36 99.48 0.63 -11.84 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 12 N -0.70 -33.93 4.95 -446.10 -2.21 -36.14 16 13 C 0.54 23.21 7.63 87.66 0.67 23.88 16 14 O -0.58 -27.69 16.51 -3.03 -0.05 -27.74 16 15 C 0.02 0.75 2.46 3.02 0.01 0.76 16 16 C -0.11 -2.51 9.96 30.60 0.30 -2.21 16 17 C -0.09 -1.84 6.76 -9.94 -0.07 -1.91 16 18 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 19 C -0.09 -1.17 6.86 31.80 0.22 -0.95 16 20 C 0.10 1.92 7.19 86.39 0.62 2.54 16 21 N -0.58 -16.98 3.07 -892.17 -2.74 -19.72 16 22 C 0.66 22.09 6.85 129.79 0.89 22.98 16 23 O -0.58 -23.01 10.68 19.82 0.21 -22.79 16 24 O -0.36 -10.29 9.47 -55.46 -0.53 -10.82 16 25 C 0.13 3.22 1.13 -10.79 -0.01 3.20 16 26 C -0.18 -5.65 8.37 71.98 0.60 -5.04 16 27 C -0.13 -2.21 8.85 71.98 0.64 -1.57 16 28 C -0.18 -3.97 8.37 71.98 0.60 -3.37 16 29 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 2.65 4.40 -2.39 -0.01 2.64 16 32 H 0.25 16.32 8.72 -92.71 -0.81 15.52 16 33 H 0.39 19.41 5.28 -92.71 -0.49 18.92 16 34 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.70 7.93 -2.38 -0.02 1.68 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.05 2.04 5.88 -2.39 -0.01 2.03 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.06 1.72 5.88 -2.39 -0.01 1.71 16 47 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -78.99 378.36 2.96 -76.03 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: 0.33 Total: 36.57 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.91 Total: 8.32 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -4.65 Total: -114.42 kcal Atomic # 8 Polarization: -60.99 SS G_CDS: -0.36 Total: -61.35 kcal Atomic # 14 Polarization: 53.11 SS G_CDS: 1.73 Total: 54.84 kcal Total: -78.99 2.96 -76.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370563421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.476 kcal (2) G-P(sol) polarization free energy of solvation -78.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds