Wall clock time and date at job start Tue Mar 31 2020 14:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47487 * 2 1 4 4 C 1.50698 * 109.47135 * 239.99660 * 2 1 3 5 5 H 1.08001 * 120.00268 * 240.00454 * 4 2 1 6 6 C 1.37877 * 119.99979 * 59.99818 * 4 2 1 7 7 N 1.31514 * 119.99932 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00330 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47013 * 90.00077 * 8 6 4 10 10 H 1.48489 * 109.47251 * 210.00633 * 8 6 4 11 11 H 1.48506 * 109.46794 * 330.00902 * 8 6 4 12 12 N 1.46509 * 109.46901 * 119.99993 * 2 1 3 13 13 C 1.34775 * 119.99578 * 274.99411 * 12 2 1 14 14 O 1.21275 * 120.00331 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99676 * 180.02562 * 13 12 2 16 16 H 1.09004 * 115.56357 * 325.75808 * 15 13 12 17 17 C 1.53158 * 117.55487 * 111.56675 * 15 13 12 18 18 C 1.52323 * 117.51902 * 180.02562 * 15 13 12 19 19 C 1.53292 * 128.81510 * 10.41433 * 18 15 13 20 20 N 1.47723 * 85.98703 * 162.95068 * 19 18 15 21 21 C 1.34780 * 134.39178 * 155.96722 * 20 19 18 22 22 O 1.21512 * 120.00201 * 0.02562 * 21 20 19 23 23 O 1.34642 * 119.99833 * 180.02562 * 21 20 19 24 24 C 1.45197 * 116.99551 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47522 * 60.00171 * 24 23 21 26 26 C 1.53006 * 109.46817 * 179.97438 * 24 23 21 27 27 C 1.52998 * 109.47262 * 299.99705 * 24 23 21 28 28 C 1.47967 * 91.11583 * 336.01184 * 20 19 18 29 29 H 1.08998 * 109.47487 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46930 * 300.00034 * 1 2 3 31 31 H 1.09003 * 109.47096 * 60.00078 * 1 2 3 32 32 H 0.97002 * 120.00182 * 179.97438 * 7 6 4 33 33 H 0.97003 * 119.99584 * 95.00137 * 12 2 1 34 34 H 1.09000 * 117.51296 * 359.97438 * 17 15 13 35 35 H 1.08994 * 117.51836 * 214.85959 * 17 15 13 36 36 H 1.09002 * 113.81169 * 277.24741 * 19 18 15 37 37 H 1.09001 * 113.81166 * 48.65562 * 19 18 15 38 38 H 1.09000 * 109.47436 * 59.99092 * 25 24 23 39 39 H 1.08993 * 109.47566 * 180.02562 * 25 24 23 40 40 H 1.09009 * 109.46789 * 299.99993 * 25 24 23 41 41 H 1.09002 * 109.46992 * 60.00108 * 26 24 23 42 42 H 1.09002 * 109.46781 * 180.02562 * 26 24 23 43 43 H 1.08997 * 109.47151 * 300.00264 * 26 24 23 44 44 H 1.08999 * 109.47255 * 60.00402 * 27 24 23 45 45 H 1.09001 * 109.46823 * 180.02562 * 27 24 23 46 46 H 1.08997 * 109.47371 * 299.99865 * 27 24 23 47 47 H 1.08996 * 113.70611 * 269.74608 * 28 20 19 48 48 H 1.09005 * 113.99068 * 138.26399 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3224 -1.1197 -4.0080 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1405 -5.1120 11 1 3.6307 -1.7569 -3.7119 12 7 2.0183 -0.6907 1.1963 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6499 -0.7284 3.5875 16 1 2.3541 -1.7734 3.6813 17 6 4.0311 -0.3337 4.1187 18 6 2.7730 0.0855 4.8691 19 6 2.2554 1.4980 5.1637 20 7 2.4461 1.1585 6.5887 21 6 2.6450 1.8779 7.7109 22 8 2.6960 3.0906 7.6542 23 8 2.7871 1.2528 8.8950 24 6 2.9988 2.0910 10.0615 25 6 1.8067 3.0341 10.2351 26 6 3.1363 1.2095 11.3046 27 6 4.2760 2.9124 9.8744 28 6 2.3326 -0.2862 6.2896 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7094 1.1616 -3.4844 33 1 2.2490 -1.6318 1.1526 34 1 4.5764 0.4397 3.5778 35 1 4.6435 -1.1189 4.5618 36 1 2.9135 2.2909 4.8083 37 1 1.2133 1.6521 4.8837 38 1 0.8968 2.4490 10.3684 39 1 1.9658 3.6636 11.1106 40 1 1.7083 3.6621 9.3495 41 1 3.9855 0.5373 11.1812 42 1 3.2948 1.8388 12.1804 43 1 2.2263 0.6246 11.4377 44 1 4.1776 3.5404 8.9889 45 1 4.4351 3.5413 10.7504 46 1 5.1253 2.2405 9.7509 47 1 1.3131 -0.6671 6.3487 48 1 3.0510 -0.9074 6.8246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492818969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:06 Heat of formation + Delta-G solvation = -54.858013 kcal Electronic energy + Delta-G solvation = -27648.149940 eV Core-core repulsion = 23705.657957 eV Total energy + Delta-G solvation = -3942.491983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.00594 -40.03191 -38.41467 -36.73513 -35.00782 -34.43740 -33.97417 -32.36206 -29.11368 -27.96406 -27.65673 -27.60004 -26.42541 -25.28979 -24.02777 -22.16175 -20.93365 -19.80549 -19.35638 -18.74047 -17.86886 -17.19770 -16.77981 -16.44599 -15.96394 -15.33747 -15.25493 -14.99560 -14.54728 -14.36476 -14.26545 -14.03363 -13.68308 -13.23669 -13.20428 -12.75316 -12.62437 -12.43786 -12.40669 -12.13689 -12.12442 -12.04131 -11.72697 -11.67886 -11.51645 -11.14438 -10.99634 -10.89076 -10.84321 -10.64606 -10.53660 -10.36652 -10.28628 -10.24543 -9.91109 -9.09198 -9.04961 -8.83641 -8.57408 -7.94340 -6.14239 -4.23697 1.86624 2.77385 3.04464 3.22920 3.29954 3.31838 3.55415 3.75314 3.88166 4.27367 4.40746 4.47454 4.51351 4.52528 4.65851 4.86912 5.06574 5.17918 5.18103 5.20012 5.21928 5.27984 5.39900 5.42737 5.47080 5.50175 5.56446 5.61977 5.64883 5.68902 5.74091 5.81366 5.93711 5.98350 6.07060 6.11578 6.37933 6.80322 6.94232 7.12668 7.42711 7.53518 7.60545 7.67381 7.89209 8.12978 8.26469 8.63894 8.75658 9.09068 9.43982 10.91638 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.036621 B = 0.002091 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.396808 B =13387.880822 C =13619.695869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.703 5.703 13 C 0.528 3.472 14 O -0.552 6.552 15 C -0.157 4.157 16 H 0.126 0.874 17 C -0.114 4.114 18 C -0.154 4.154 19 C 0.190 3.810 20 N -0.633 5.633 21 C 0.675 3.325 22 O -0.568 6.568 23 O -0.364 6.364 24 C 0.135 3.865 25 C -0.184 4.184 26 C -0.139 4.139 27 C -0.183 4.183 28 C 0.150 3.850 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.090 0.910 32 H 0.264 0.736 33 H 0.390 0.610 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.093 0.907 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.581 -3.909 24.182 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.350 5.350 13 C 0.312 3.688 14 O -0.431 6.431 15 C -0.179 4.179 16 H 0.144 0.856 17 C -0.151 4.151 18 C -0.156 4.156 19 C 0.070 3.930 20 N -0.376 5.376 21 C 0.431 3.569 22 O -0.458 6.458 23 O -0.279 6.279 24 C 0.098 3.902 25 C -0.241 4.241 26 C -0.196 4.196 27 C -0.240 4.240 28 C 0.027 3.973 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.222 0.778 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.111 0.889 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.334 -2.404 24.290 24.790 hybrid contribution 0.291 -0.992 -0.870 1.351 sum 4.625 -3.396 23.420 24.113 Atomic orbital electron populations 1.22077 0.98437 0.99103 1.00935 1.18757 0.91018 0.93988 0.79944 0.93342 1.21210 1.32483 1.13228 0.90309 0.92062 1.24898 0.94838 0.94952 0.99094 1.69902 1.35866 1.22361 1.23908 0.86443 0.79154 0.79259 0.82207 1.20560 1.21083 1.19858 1.46470 1.64553 1.13632 1.10312 1.19420 0.78624 0.86959 0.83793 1.90655 1.51490 1.15929 1.85014 1.22340 1.02185 1.00266 0.93093 0.85648 1.22828 0.89130 1.02925 1.00202 1.22419 1.04067 0.97201 0.91913 1.22528 1.02293 0.95235 0.72951 1.48714 1.73973 1.09079 1.05832 1.17407 0.76314 0.83357 0.79814 1.90902 1.57065 1.12110 1.85696 1.86300 1.85289 1.41297 1.15010 1.22056 0.96072 0.90090 0.81972 1.22516 0.97030 1.00140 1.04385 1.21848 1.03186 0.99974 0.94635 1.22516 0.96073 1.00910 1.04545 1.22715 1.01676 0.82370 0.90493 0.95491 0.96616 0.89164 0.92556 0.77809 0.87525 0.87410 0.89302 0.88199 0.92224 0.91199 0.89334 0.91522 0.90196 0.91530 0.89313 0.91227 0.92218 0.88897 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.23 16 2 C 0.26 6.53 2.56 -69.08 -0.18 6.35 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.70 -13.80 5.07 -54.93 -0.28 -14.08 16 13 C 0.53 9.65 7.58 -10.99 -0.08 9.56 16 14 O -0.55 -12.12 14.79 5.56 0.08 -12.04 16 15 C -0.16 -1.97 6.19 -92.04 -0.57 -2.54 16 16 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 17 C -0.11 -1.25 10.24 -26.97 -0.28 -1.53 16 18 C -0.15 -1.84 3.04 -154.98 -0.47 -2.31 16 19 C 0.19 2.70 7.26 -3.22 -0.02 2.68 16 20 N -0.63 -8.45 3.62 -186.40 -0.68 -9.12 16 21 C 0.67 9.82 8.22 54.06 0.44 10.27 16 22 O -0.57 -9.54 12.61 -19.28 -0.24 -9.79 16 23 O -0.36 -4.55 9.88 -40.33 -0.40 -4.95 16 24 C 0.13 1.35 1.13 -90.62 -0.10 1.25 16 25 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 26 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 27 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 28 C 0.15 1.51 8.90 -3.09 -0.03 1.48 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.39 6.54 8.54 -40.82 -0.35 6.19 16 34 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.10 1.50 8.00 -51.93 -0.42 1.09 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.12 5.88 -51.92 -0.31 0.82 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -31.84 392.29 -8.35 -40.19 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.97 Total: 6.64 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.39 Total: 5.87 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.33 Total: -47.16 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.56 Total: -26.77 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.84 -8.35 -40.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492818969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.671 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds