Wall clock time and date at job start Tue Mar 31 2020 14:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47487 * 2 1 4 4 C 1.50698 * 109.47135 * 239.99660 * 2 1 3 5 5 H 1.08001 * 120.00268 * 240.00454 * 4 2 1 6 6 C 1.37877 * 119.99979 * 59.99818 * 4 2 1 7 7 N 1.31514 * 119.99932 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00330 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47013 * 90.00077 * 8 6 4 10 10 H 1.48489 * 109.47251 * 210.00633 * 8 6 4 11 11 H 1.48506 * 109.46794 * 330.00902 * 8 6 4 12 12 N 1.46509 * 109.46901 * 119.99993 * 2 1 3 13 13 C 1.34775 * 119.99578 * 274.99411 * 12 2 1 14 14 O 1.21275 * 120.00331 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99676 * 180.02562 * 13 12 2 16 16 H 1.09004 * 115.56357 * 325.75808 * 15 13 12 17 17 C 1.53158 * 117.55487 * 111.56675 * 15 13 12 18 18 C 1.52323 * 117.51902 * 180.02562 * 15 13 12 19 19 C 1.53292 * 128.81510 * 10.41433 * 18 15 13 20 20 N 1.47723 * 85.98703 * 162.95068 * 19 18 15 21 21 C 1.34780 * 134.39178 * 155.96722 * 20 19 18 22 22 O 1.21512 * 120.00201 * 0.02562 * 21 20 19 23 23 O 1.34642 * 119.99833 * 180.02562 * 21 20 19 24 24 C 1.45197 * 116.99551 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47522 * 60.00171 * 24 23 21 26 26 C 1.53006 * 109.46817 * 179.97438 * 24 23 21 27 27 C 1.52998 * 109.47262 * 299.99705 * 24 23 21 28 28 C 1.47967 * 91.11583 * 336.01184 * 20 19 18 29 29 H 1.08998 * 109.47487 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46930 * 300.00034 * 1 2 3 31 31 H 1.09003 * 109.47096 * 60.00078 * 1 2 3 32 32 H 0.97002 * 120.00182 * 179.97438 * 7 6 4 33 33 H 0.97003 * 119.99584 * 95.00137 * 12 2 1 34 34 H 1.09000 * 117.51296 * 359.97438 * 17 15 13 35 35 H 1.08994 * 117.51836 * 214.85959 * 17 15 13 36 36 H 1.09002 * 113.81169 * 277.24741 * 19 18 15 37 37 H 1.09001 * 113.81166 * 48.65562 * 19 18 15 38 38 H 1.09000 * 109.47436 * 59.99092 * 25 24 23 39 39 H 1.08993 * 109.47566 * 180.02562 * 25 24 23 40 40 H 1.09009 * 109.46789 * 299.99993 * 25 24 23 41 41 H 1.09002 * 109.46992 * 60.00108 * 26 24 23 42 42 H 1.09002 * 109.46781 * 180.02562 * 26 24 23 43 43 H 1.08997 * 109.47151 * 300.00264 * 26 24 23 44 44 H 1.08999 * 109.47255 * 60.00402 * 27 24 23 45 45 H 1.09001 * 109.46823 * 180.02562 * 27 24 23 46 46 H 1.08997 * 109.47371 * 299.99865 * 27 24 23 47 47 H 1.08996 * 113.70611 * 269.74608 * 28 20 19 48 48 H 1.09005 * 113.99068 * 138.26399 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3224 -1.1197 -4.0080 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1405 -5.1120 11 1 3.6307 -1.7569 -3.7119 12 7 2.0183 -0.6907 1.1963 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6499 -0.7284 3.5875 16 1 2.3541 -1.7734 3.6813 17 6 4.0311 -0.3337 4.1187 18 6 2.7730 0.0855 4.8691 19 6 2.2554 1.4980 5.1637 20 7 2.4461 1.1585 6.5887 21 6 2.6450 1.8779 7.7109 22 8 2.6960 3.0906 7.6542 23 8 2.7871 1.2528 8.8950 24 6 2.9988 2.0910 10.0615 25 6 1.8067 3.0341 10.2351 26 6 3.1363 1.2095 11.3046 27 6 4.2760 2.9124 9.8744 28 6 2.3326 -0.2862 6.2896 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7094 1.1616 -3.4844 33 1 2.2490 -1.6318 1.1526 34 1 4.5764 0.4397 3.5778 35 1 4.6435 -1.1189 4.5618 36 1 2.9135 2.2909 4.8083 37 1 1.2133 1.6521 4.8837 38 1 0.8968 2.4490 10.3684 39 1 1.9658 3.6636 11.1106 40 1 1.7083 3.6621 9.3495 41 1 3.9855 0.5373 11.1812 42 1 3.2948 1.8388 12.1804 43 1 2.2263 0.6246 11.4377 44 1 4.1776 3.5404 8.9889 45 1 4.4351 3.5413 10.7504 46 1 5.1253 2.2405 9.7509 47 1 1.3131 -0.6671 6.3487 48 1 3.0510 -0.9074 6.8246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492818969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:05 Heat of formation + Delta-G solvation = -75.775710 kcal Electronic energy + Delta-G solvation = -27649.056999 eV Core-core repulsion = 23705.657957 eV Total energy + Delta-G solvation = -3943.399043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03308 -41.14902 -39.77556 -37.78962 -36.70079 -35.62437 -34.86195 -34.24524 -30.94367 -29.03055 -28.37907 -28.29189 -27.38804 -27.32793 -25.35114 -23.10302 -22.51083 -21.17847 -20.57531 -19.82327 -18.96015 -18.59191 -17.84150 -17.50180 -17.47883 -17.03562 -16.32357 -16.11906 -15.93861 -15.64801 -15.28516 -15.10822 -14.82140 -14.57676 -14.38022 -14.16260 -13.82481 -13.59860 -13.33411 -13.15092 -13.05425 -12.98984 -12.89773 -12.86585 -12.85654 -12.71634 -12.52707 -12.37147 -12.26894 -12.13399 -11.88576 -11.66235 -11.41039 -11.29155 -11.08620 -10.92744 -10.66824 -10.52173 -9.88759 -9.69351 -8.16095 -6.33383 0.88232 1.46000 1.46841 1.57262 1.65315 1.76265 2.32793 2.52078 2.68765 2.88567 3.14287 3.27336 3.46920 3.75202 3.79208 3.83604 3.94403 4.12677 4.19654 4.29379 4.45679 4.51369 4.53954 4.60437 4.63703 4.71191 4.75534 4.78853 4.82235 4.85076 4.86147 4.88236 4.92366 4.95150 5.07638 5.12525 5.13135 5.27188 5.33206 5.46211 5.46796 5.64224 5.72795 5.94013 6.12676 6.58386 6.75543 7.03628 7.19769 7.34861 7.62829 8.89997 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.036621 B = 0.002091 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.396808 B =13387.880822 C =13619.695869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H -0.004 1.004 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.289 1.289 11 H -0.262 1.262 12 N -0.700 5.700 13 C 0.520 3.480 14 O -0.597 6.597 15 C -0.151 4.151 16 H 0.169 0.831 17 C -0.098 4.098 18 C -0.153 4.153 19 C 0.179 3.821 20 N -0.638 5.638 21 C 0.669 3.331 22 O -0.601 6.601 23 O -0.361 6.361 24 C 0.122 3.878 25 C -0.180 4.180 26 C -0.132 4.132 27 C -0.179 4.179 28 C 0.163 3.837 29 H 0.041 0.959 30 H 0.012 0.988 31 H 0.063 0.937 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.111 0.889 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.864 -7.422 26.225 27.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.014 0.986 4 C -0.582 4.582 5 H 0.094 0.906 6 C -0.189 4.189 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.349 5.349 13 C 0.308 3.692 14 O -0.479 6.479 15 C -0.173 4.173 16 H 0.186 0.814 17 C -0.135 4.135 18 C -0.154 4.154 19 C 0.058 3.942 20 N -0.380 5.380 21 C 0.425 3.575 22 O -0.493 6.493 23 O -0.276 6.276 24 C 0.086 3.914 25 C -0.238 4.238 26 C -0.189 4.189 27 C -0.237 4.237 28 C 0.043 3.957 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.104 0.896 35 H 0.170 0.830 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.129 0.871 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.633 -5.984 26.370 27.621 hybrid contribution -0.116 0.226 -1.455 1.477 sum 5.517 -5.759 24.915 26.160 Atomic orbital electron populations 1.21891 0.98403 0.99465 0.99454 1.18305 0.91015 0.91833 0.82114 0.98635 1.21560 1.32391 1.13488 0.90733 0.90649 1.25830 0.94987 0.95607 1.02453 1.70063 1.37182 1.23981 1.24514 0.85336 0.79040 0.77966 0.77933 1.19648 1.21547 1.18658 1.46196 1.64849 1.14352 1.09466 1.20415 0.77330 0.86589 0.84913 1.90647 1.53086 1.18318 1.85856 1.22257 1.03528 1.01508 0.89965 0.81360 1.23007 0.88544 1.03158 0.98762 1.22423 1.04870 0.95264 0.92856 1.22407 1.00982 0.96541 0.74295 1.48815 1.73441 1.10774 1.04982 1.17621 0.76120 0.83125 0.80588 1.90891 1.58374 1.13738 1.86321 1.86311 1.84970 1.41559 1.14733 1.22481 0.95896 0.90846 0.82219 1.22477 0.97403 1.00082 1.03792 1.21867 1.03687 0.99929 0.93412 1.22469 0.96318 1.00840 1.04038 1.22921 1.03548 0.80637 0.88622 0.93968 0.96909 0.91798 0.92669 0.75762 0.89570 0.83011 0.91976 0.89875 0.91886 0.88826 0.92724 0.90932 0.87851 0.91079 0.92697 0.88884 0.91732 0.87102 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.66 9.26 71.98 0.67 -6.00 16 2 C 0.27 13.75 2.56 44.24 0.11 13.86 16 3 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 4 C -0.54 -28.15 8.73 25.60 0.22 -27.93 16 5 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -52.67 11.32 21.45 0.24 -52.42 16 8 Si 0.97 41.51 29.54 68.60 2.03 43.53 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 12 N -0.70 -27.28 5.07 -446.10 -2.26 -29.54 16 13 C 0.52 19.03 7.58 87.66 0.66 19.69 16 14 O -0.60 -27.57 14.79 -3.01 -0.04 -27.62 16 15 C -0.15 -3.41 6.19 -11.71 -0.07 -3.48 16 16 H 0.17 2.42 8.14 -2.38 -0.02 2.41 16 17 C -0.10 -1.88 10.24 30.44 0.31 -1.57 16 18 C -0.15 -3.36 3.04 -52.38 -0.16 -3.52 16 19 C 0.18 5.31 7.26 86.24 0.63 5.94 16 20 N -0.64 -16.80 3.62 -974.05 -3.53 -20.32 16 21 C 0.67 19.67 8.22 129.79 1.07 20.74 16 22 O -0.60 -21.38 12.61 19.80 0.25 -21.13 16 23 O -0.36 -8.62 9.88 -55.51 -0.55 -9.17 16 24 C 0.12 2.28 1.13 -10.79 -0.01 2.26 16 25 C -0.18 -3.47 8.37 71.98 0.60 -2.86 16 26 C -0.13 -1.43 8.85 71.98 0.64 -0.80 16 27 C -0.18 -3.40 8.37 71.98 0.60 -2.79 16 28 C 0.16 2.79 8.90 86.19 0.77 3.56 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 3.54 6.07 -2.39 -0.01 3.52 16 32 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.41 12.88 8.54 -92.71 -0.79 12.09 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.70 8.00 -2.39 -0.02 2.69 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.45 5.88 -2.38 -0.01 1.43 16 41 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 1.44 5.88 -2.39 -0.01 1.43 16 45 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -75.04 392.29 2.79 -72.25 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.16 Total: 26.27 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.49 Total: 18.15 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -5.55 Total: -102.28 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -0.34 Total: -57.92 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -75.04 2.79 -72.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492818969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.526 kcal (2) G-P(sol) polarization free energy of solvation -75.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds