Wall clock time and date at job start Tue Mar 31 2020 13:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49840 * 2 1 4 4 C 1.53193 * 109.49575 * 120.05924 * 2 1 3 5 5 N 1.46925 * 108.77580 * 65.34872 * 4 2 1 6 6 C 1.34782 * 120.63077 * 233.33119 * 5 4 2 7 7 O 1.21581 * 119.99658 * 354.95845 * 6 5 4 8 8 N 1.34773 * 119.99647 * 174.95433 * 6 5 4 9 9 C 1.46508 * 119.99710 * 185.07262 * 8 6 5 10 10 H 1.09000 * 110.01342 * 325.06745 * 9 8 6 11 11 C 1.53869 * 110.03046 * 86.45444 * 9 8 6 12 12 C 1.54268 * 106.59536 * 119.28301 * 11 9 8 13 13 C 1.54889 * 104.19832 * 23.61504 * 12 11 9 14 14 H 1.08995 * 110.75745 * 80.36273 * 13 12 11 15 15 C 1.50700 * 110.75819 * 203.55960 * 13 12 11 16 16 H 1.07995 * 120.00364 * 118.53990 * 15 13 12 17 17 C 1.37876 * 119.99435 * 298.54509 * 15 13 12 18 18 N 1.31510 * 120.00426 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99692 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47010 * 89.99749 * 19 17 15 21 21 H 1.48504 * 109.46924 * 209.99584 * 19 17 15 22 22 H 1.48492 * 109.46893 * 329.99641 * 19 17 15 23 23 C 1.54267 * 110.03027 * 203.62141 * 9 8 6 24 24 C 1.46927 * 118.73906 * 53.60902 * 5 4 2 25 25 C 1.53194 * 108.77454 * 306.39236 * 24 5 4 26 26 C 1.53032 * 109.31287 * 54.63226 * 25 24 5 27 27 H 1.09006 * 109.46313 * 58.65828 * 26 25 24 28 28 C 1.50702 * 109.45060 * 178.62058 * 26 25 24 29 29 O 1.20826 * 119.99961 * 120.06022 * 28 26 25 30 30 O 1.34227 * 119.99840 * 300.06721 * 28 26 25 31 31 H 1.08998 * 109.46967 * 299.94295 * 1 2 3 32 32 H 1.09001 * 109.46912 * 59.94303 * 1 2 3 33 33 H 1.09000 * 109.46696 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.58894 * 305.56199 * 4 2 1 35 35 H 1.09005 * 109.58777 * 185.13373 * 4 2 1 36 36 H 0.97000 * 120.00147 * 5.07770 * 8 6 5 37 37 H 1.09001 * 110.03421 * 238.56972 * 11 9 8 38 38 H 1.09005 * 110.03539 * 359.95828 * 11 9 8 39 39 H 1.08999 * 110.48305 * 142.28825 * 12 11 9 40 40 H 1.08999 * 110.49035 * 264.93216 * 12 11 9 41 41 H 0.97004 * 120.00314 * 180.02562 * 18 17 15 42 42 H 1.08995 * 110.49180 * 335.78912 * 23 9 8 43 43 H 1.09008 * 110.48315 * 98.42976 * 23 9 8 44 44 H 1.09000 * 109.58575 * 66.17945 * 24 5 4 45 45 H 1.09002 * 109.58554 * 186.60178 * 24 5 4 46 46 H 1.09002 * 109.49241 * 294.68413 * 25 24 5 47 47 H 1.08997 * 109.52298 * 174.60349 * 25 24 5 48 48 H 0.96708 * 116.99918 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7233 1.2499 5 7 1.6522 -2.1379 1.1700 6 6 0.9798 -2.7233 2.1809 7 8 0.7698 -2.1077 3.2081 8 7 0.5403 -3.9909 2.0529 9 6 -0.2854 -4.5896 3.1047 10 1 0.0309 -4.2230 4.0813 11 6 -1.7674 -4.2498 2.8689 12 6 -2.5033 -5.5928 2.6832 13 6 -1.5978 -6.6245 3.4007 14 1 -1.7638 -6.6012 4.4777 15 6 -1.8313 -8.0101 2.8560 16 1 -1.0237 -8.5466 2.3805 17 6 -3.0761 -8.5928 2.9649 18 7 -4.0595 -7.9396 3.5444 19 14 -3.3655 -10.3106 2.2905 20 1 -3.0781 -11.3125 3.3481 21 1 -4.7799 -10.4404 1.8569 22 1 -2.4686 -10.5444 1.1303 23 6 -0.1723 -6.1273 3.0541 24 6 2.0153 -2.9038 -0.0301 25 6 1.5044 -2.1560 -1.2656 26 6 2.0415 -0.7232 -1.2480 27 1 3.1313 -0.7439 -1.2347 28 6 1.5684 0.0053 -2.4796 29 8 0.8917 1.0003 -2.3703 30 8 1.8987 -0.4514 -3.6978 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5147 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6002 -0.2727 2.1390 35 1 3.1275 -0.6454 1.2986 36 1 0.7707 -4.5068 1.2645 37 1 -2.1707 -3.7191 3.7314 38 1 -1.8723 -3.6387 1.9723 39 1 -3.4865 -5.5570 3.1523 40 1 -2.5933 -5.8354 1.6244 41 1 -4.9352 -8.3497 3.6213 42 1 0.1142 -6.4562 2.0553 43 1 0.5456 -6.4815 3.7940 44 1 3.0993 -3.0036 -0.0857 45 1 1.5572 -3.8919 0.0146 46 1 0.4146 -2.1362 -1.2539 47 1 1.8495 -2.6629 -2.1667 48 1 1.5716 0.0491 -4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599864388.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:17 Heat of formation + Delta-G solvation = -129.452633 kcal Electronic energy + Delta-G solvation = -28708.362175 eV Core-core repulsion = 24762.635526 eV Total energy + Delta-G solvation = -3945.726649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.27812 -40.13366 -38.19961 -36.91323 -36.43640 -34.08402 -33.27645 -32.14554 -31.65492 -28.15110 -27.72397 -27.37254 -25.85007 -23.81595 -23.38410 -22.52685 -20.70175 -19.79237 -19.15001 -18.81501 -18.41479 -18.10922 -16.89890 -16.60359 -16.04905 -15.87520 -15.54356 -15.07080 -14.77947 -14.59930 -14.13377 -14.04184 -13.86434 -13.78439 -13.33803 -13.09553 -12.64489 -12.33356 -12.24848 -12.18117 -11.86777 -11.80500 -11.73658 -11.31481 -11.10288 -11.00325 -10.93339 -10.90754 -10.85084 -10.58482 -10.55098 -10.27508 -9.94842 -9.77523 -9.49973 -9.21369 -8.86734 -8.78492 -8.41309 -8.34206 -6.00551 -4.04235 1.82889 2.60941 2.73779 3.29788 3.36982 3.38830 3.39870 3.98814 4.12615 4.28139 4.43411 4.50690 4.67239 4.87466 4.92948 5.00268 5.16563 5.28889 5.31706 5.32001 5.44726 5.52095 5.55413 5.63625 5.70338 5.75984 5.86743 5.88243 5.92932 6.10545 6.30329 6.34903 6.39329 6.42403 6.61693 6.69496 6.76371 6.91828 6.98386 7.02900 7.29602 7.38680 7.53291 7.73010 7.89515 8.03404 8.14676 8.42942 8.80502 8.97880 9.59908 11.08445 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002754 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.134523 B =10166.033306 C =10808.613367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 H 0.089 0.911 4 C 0.136 3.864 5 N -0.634 5.634 6 C 0.707 3.293 7 O -0.590 6.590 8 N -0.734 5.734 9 C 0.155 3.845 10 H 0.080 0.920 11 C -0.135 4.135 12 C -0.099 4.099 13 C 0.052 3.948 14 H 0.032 0.968 15 C -0.514 4.514 16 H 0.055 0.945 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.120 4.120 24 C 0.114 3.886 25 C -0.130 4.130 26 C -0.073 4.073 27 H 0.111 0.889 28 C 0.482 3.518 29 O -0.508 6.508 30 O -0.517 6.517 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.391 0.609 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.260 0.740 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.358 14.571 -12.818 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.110 4.110 3 H 0.108 0.892 4 C 0.013 3.987 5 N -0.372 5.372 6 C 0.408 3.592 7 O -0.469 6.469 8 N -0.389 5.389 9 C 0.051 3.949 10 H 0.098 0.902 11 C -0.174 4.174 12 C -0.138 4.138 13 C 0.033 3.967 14 H 0.050 0.950 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.158 4.158 24 C -0.009 4.009 25 C -0.169 4.169 26 C -0.092 4.092 27 H 0.129 0.871 28 C 0.325 3.675 29 O -0.395 6.395 30 O -0.329 6.329 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.228 0.772 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 13.934 15.043 -11.610 23.564 hybrid contribution -0.360 -0.810 -1.456 1.705 sum 13.574 14.233 -13.066 23.613 Atomic orbital electron populations 1.22026 0.93757 1.02399 1.03124 1.21433 0.97959 0.99321 0.92265 0.89242 1.21469 0.99055 0.79848 0.98346 1.47259 1.60701 1.11268 1.18021 1.15902 0.78093 0.82118 0.83052 1.90890 1.63408 1.64334 1.28219 1.45724 1.55822 1.12584 1.24816 1.21755 0.89731 0.93841 0.89621 0.90187 1.22669 0.94879 0.99635 1.00206 1.22297 0.99904 0.91553 1.00025 1.19544 0.87384 0.93631 0.96139 0.94996 1.21083 0.95873 1.00070 1.38231 0.92690 1.24975 0.96283 0.97444 0.95201 1.69960 1.01980 1.37257 1.43399 0.86646 0.77324 0.85027 0.79274 1.20752 1.21324 1.19999 1.22748 1.01311 0.91108 1.00675 1.21585 1.00372 0.95101 0.83892 1.22001 1.02613 0.92945 0.99328 1.21084 1.02634 0.96032 0.89478 0.87141 1.23526 0.76595 0.82706 0.84705 1.90694 1.35845 1.25923 1.87061 1.84540 1.72955 1.58420 1.16953 0.92324 0.90869 0.92476 0.88129 0.91696 0.77224 0.92654 0.93356 0.91279 0.93617 0.93069 0.92243 0.92856 0.90899 0.89544 0.90125 0.89236 0.73192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 8.40 37.16 0.31 -1.41 16 2 C -0.09 -0.79 2.35 -90.50 -0.21 -1.01 16 3 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 4 C 0.14 1.34 5.81 -3.71 -0.02 1.31 16 5 N -0.63 -7.08 2.41 -178.49 -0.43 -7.51 16 6 C 0.71 10.94 8.28 -86.92 -0.72 10.22 16 7 O -0.59 -11.49 15.43 5.29 0.08 -11.41 16 8 N -0.73 -11.07 4.91 -57.58 -0.28 -11.36 16 9 C 0.15 2.82 3.27 -66.81 -0.22 2.60 16 10 H 0.08 1.56 7.54 -51.93 -0.39 1.17 16 11 C -0.13 -2.65 6.59 -25.61 -0.17 -2.82 16 12 C -0.10 -2.28 5.57 -25.07 -0.14 -2.42 16 13 C 0.05 1.25 2.81 -89.78 -0.25 0.99 16 14 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 15 C -0.51 -13.65 8.55 -34.44 -0.29 -13.94 16 16 H 0.05 1.43 7.78 -52.49 -0.41 1.02 16 17 C 0.06 1.71 5.33 -17.82 -0.10 1.61 16 18 N -0.89 -25.13 12.02 55.43 0.67 -24.47 16 19 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.12 -2.34 5.95 -25.07 -0.15 -2.49 16 24 C 0.11 0.90 6.43 -3.71 -0.02 0.87 16 25 C -0.13 -0.93 4.96 -26.61 -0.13 -1.06 16 26 C -0.07 -0.52 2.37 -91.73 -0.22 -0.74 16 27 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 28 C 0.48 3.98 7.34 36.01 0.26 4.25 16 29 O -0.51 -5.71 14.51 -18.75 -0.27 -5.98 16 30 O -0.52 -3.11 13.30 -39.25 -0.52 -3.63 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.86 5.65 -51.93 -0.29 0.57 16 33 H 0.06 0.69 5.97 -51.93 -0.31 0.38 16 34 H 0.10 1.21 7.04 -51.93 -0.37 0.84 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.39 4.96 5.80 -40.82 -0.24 4.72 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 39 H 0.07 1.75 7.37 -51.93 -0.38 1.36 16 40 H 0.04 1.07 8.04 -51.93 -0.42 0.65 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.06 1.10 7.63 -51.93 -0.40 0.71 16 43 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.67 5.57 -51.93 -0.29 0.38 16 46 H 0.08 0.71 6.34 -51.93 -0.33 0.38 16 47 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 48 H 0.41 0.94 9.10 45.56 0.41 1.35 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -33.04 370.64 -9.01 -42.05 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.75 Total: 4.91 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.07 Total: -4.03 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.05 Total: -43.34 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.71 Total: -21.02 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.04 -9.01 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599864388.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.400 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds