Wall clock time and date at job start Tue Mar 31 2020 13:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49840 * 2 1 4 4 C 1.53193 * 109.49575 * 120.05924 * 2 1 3 5 5 N 1.46925 * 108.77580 * 65.34872 * 4 2 1 6 6 C 1.34782 * 120.63077 * 233.33119 * 5 4 2 7 7 O 1.21581 * 119.99658 * 354.95845 * 6 5 4 8 8 N 1.34773 * 119.99647 * 174.95433 * 6 5 4 9 9 C 1.46508 * 119.99710 * 185.07262 * 8 6 5 10 10 H 1.09000 * 110.01342 * 325.06745 * 9 8 6 11 11 C 1.53869 * 110.03046 * 86.45444 * 9 8 6 12 12 C 1.54268 * 106.59536 * 119.28301 * 11 9 8 13 13 C 1.54889 * 104.19832 * 23.61504 * 12 11 9 14 14 H 1.08995 * 110.75745 * 80.36273 * 13 12 11 15 15 C 1.50700 * 110.75819 * 203.55960 * 13 12 11 16 16 H 1.07995 * 120.00364 * 118.53990 * 15 13 12 17 17 C 1.37876 * 119.99435 * 298.54509 * 15 13 12 18 18 N 1.31510 * 120.00426 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99692 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47010 * 89.99749 * 19 17 15 21 21 H 1.48504 * 109.46924 * 209.99584 * 19 17 15 22 22 H 1.48492 * 109.46893 * 329.99641 * 19 17 15 23 23 C 1.54267 * 110.03027 * 203.62141 * 9 8 6 24 24 C 1.46927 * 118.73906 * 53.60902 * 5 4 2 25 25 C 1.53194 * 108.77454 * 306.39236 * 24 5 4 26 26 C 1.53032 * 109.31287 * 54.63226 * 25 24 5 27 27 H 1.09006 * 109.46313 * 58.65828 * 26 25 24 28 28 C 1.50702 * 109.45060 * 178.62058 * 26 25 24 29 29 O 1.20826 * 119.99961 * 120.06022 * 28 26 25 30 30 O 1.34227 * 119.99840 * 300.06721 * 28 26 25 31 31 H 1.08998 * 109.46967 * 299.94295 * 1 2 3 32 32 H 1.09001 * 109.46912 * 59.94303 * 1 2 3 33 33 H 1.09000 * 109.46696 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.58894 * 305.56199 * 4 2 1 35 35 H 1.09005 * 109.58777 * 185.13373 * 4 2 1 36 36 H 0.97000 * 120.00147 * 5.07770 * 8 6 5 37 37 H 1.09001 * 110.03421 * 238.56972 * 11 9 8 38 38 H 1.09005 * 110.03539 * 359.95828 * 11 9 8 39 39 H 1.08999 * 110.48305 * 142.28825 * 12 11 9 40 40 H 1.08999 * 110.49035 * 264.93216 * 12 11 9 41 41 H 0.97004 * 120.00314 * 180.02562 * 18 17 15 42 42 H 1.08995 * 110.49180 * 335.78912 * 23 9 8 43 43 H 1.09008 * 110.48315 * 98.42976 * 23 9 8 44 44 H 1.09000 * 109.58575 * 66.17945 * 24 5 4 45 45 H 1.09002 * 109.58554 * 186.60178 * 24 5 4 46 46 H 1.09002 * 109.49241 * 294.68413 * 25 24 5 47 47 H 1.08997 * 109.52298 * 174.60349 * 25 24 5 48 48 H 0.96708 * 116.99918 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7233 1.2499 5 7 1.6522 -2.1379 1.1700 6 6 0.9798 -2.7233 2.1809 7 8 0.7698 -2.1077 3.2081 8 7 0.5403 -3.9909 2.0529 9 6 -0.2854 -4.5896 3.1047 10 1 0.0309 -4.2230 4.0813 11 6 -1.7674 -4.2498 2.8689 12 6 -2.5033 -5.5928 2.6832 13 6 -1.5978 -6.6245 3.4007 14 1 -1.7638 -6.6012 4.4777 15 6 -1.8313 -8.0101 2.8560 16 1 -1.0237 -8.5466 2.3805 17 6 -3.0761 -8.5928 2.9649 18 7 -4.0595 -7.9396 3.5444 19 14 -3.3655 -10.3106 2.2905 20 1 -3.0781 -11.3125 3.3481 21 1 -4.7799 -10.4404 1.8569 22 1 -2.4686 -10.5444 1.1303 23 6 -0.1723 -6.1273 3.0541 24 6 2.0153 -2.9038 -0.0301 25 6 1.5044 -2.1560 -1.2656 26 6 2.0415 -0.7232 -1.2480 27 1 3.1313 -0.7439 -1.2347 28 6 1.5684 0.0053 -2.4796 29 8 0.8917 1.0003 -2.3703 30 8 1.8987 -0.4514 -3.6978 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5147 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6002 -0.2727 2.1390 35 1 3.1275 -0.6454 1.2986 36 1 0.7707 -4.5068 1.2645 37 1 -2.1707 -3.7191 3.7314 38 1 -1.8723 -3.6387 1.9723 39 1 -3.4865 -5.5570 3.1523 40 1 -2.5933 -5.8354 1.6244 41 1 -4.9352 -8.3497 3.6213 42 1 0.1142 -6.4562 2.0553 43 1 0.5456 -6.4815 3.7940 44 1 3.0993 -3.0036 -0.0857 45 1 1.5572 -3.8919 0.0146 46 1 0.4146 -2.1362 -1.2539 47 1 1.8495 -2.6629 -2.1667 48 1 1.5716 0.0491 -4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599864388.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:13 Heat of formation + Delta-G solvation = -150.516428 kcal Electronic energy + Delta-G solvation = -28709.275570 eV Core-core repulsion = 24762.635526 eV Total energy + Delta-G solvation = -3946.640043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -42.03284 -41.10969 -39.33141 -38.25118 -37.07943 -35.42694 -34.60489 -33.46108 -32.70276 -29.95422 -28.88048 -28.45259 -26.98247 -25.64588 -24.06792 -23.25490 -21.81001 -21.37512 -20.71073 -19.73779 -19.17386 -18.96662 -18.44477 -17.57420 -17.15789 -16.77541 -16.62601 -16.42942 -16.24673 -15.81471 -15.44095 -15.03496 -14.87653 -14.46751 -14.46008 -14.13943 -13.99408 -13.83066 -13.59436 -13.02155 -12.99126 -12.88522 -12.77625 -12.66845 -12.53897 -12.46202 -12.36965 -12.05642 -12.04447 -11.69470 -11.58592 -11.55380 -11.36046 -11.29658 -11.10168 -10.99339 -10.78613 -10.44010 -10.09267 -9.43294 -8.07235 -6.17766 1.22868 1.44955 1.45865 1.55445 1.67396 2.09714 2.25783 2.46998 2.98892 3.23684 3.48018 3.63639 3.93495 3.94620 3.96575 4.07293 4.18341 4.22656 4.34615 4.37439 4.56374 4.61535 4.68777 4.71291 4.72324 4.81770 4.85230 4.88576 4.94614 5.04970 5.08571 5.10123 5.11145 5.15819 5.18894 5.32260 5.35028 5.43694 5.59834 5.68844 5.71671 5.74183 5.94584 6.00140 6.02736 6.39788 6.92938 7.03675 7.04312 7.50078 7.63061 9.01130 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002754 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.134523 B =10166.033306 C =10808.613367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 H 0.097 0.903 4 C 0.136 3.864 5 N -0.626 5.626 6 C 0.702 3.298 7 O -0.636 6.636 8 N -0.725 5.725 9 C 0.169 3.831 10 H 0.068 0.932 11 C -0.124 4.124 12 C -0.088 4.088 13 C 0.040 3.960 14 H -0.002 1.002 15 C -0.526 4.526 16 H 0.061 0.939 17 C 0.010 3.990 18 N -0.921 5.921 19 Si 0.954 3.046 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.262 1.262 23 C -0.104 4.104 24 C 0.109 3.891 25 C -0.124 4.124 26 C -0.070 4.070 27 H 0.143 0.857 28 C 0.487 3.513 29 O -0.545 6.545 30 O -0.510 6.510 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.406 0.594 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.258 0.742 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.113 0.887 48 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.114 14.018 -15.275 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 H 0.115 0.885 4 C 0.013 3.987 5 N -0.363 5.363 6 C 0.404 3.596 7 O -0.518 6.518 8 N -0.383 5.383 9 C 0.064 3.936 10 H 0.086 0.914 11 C -0.163 4.163 12 C -0.126 4.126 13 C 0.022 3.978 14 H 0.017 0.983 15 C -0.565 4.565 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.560 5.560 19 Si 0.780 3.220 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.187 1.187 23 C -0.142 4.142 24 C -0.013 4.013 25 C -0.162 4.162 26 C -0.089 4.089 27 H 0.161 0.839 28 C 0.331 3.669 29 O -0.435 6.435 30 O -0.323 6.323 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.245 0.755 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.132 0.868 48 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 16.740 14.483 -14.151 26.273 hybrid contribution -1.217 -0.595 -0.739 1.543 sum 15.523 13.888 -14.890 25.604 Atomic orbital electron populations 1.21956 0.95928 1.01080 1.01877 1.21338 0.95965 1.00011 0.92941 0.88484 1.21567 1.00622 0.78864 0.97651 1.47301 1.59199 1.11885 1.17889 1.16056 0.78273 0.81848 0.83415 1.90864 1.65168 1.65289 1.30441 1.45398 1.55409 1.12870 1.24582 1.21312 0.89001 0.93161 0.90144 0.91427 1.22535 0.95719 0.97735 1.00284 1.22063 0.98501 0.93225 0.98846 1.19528 0.90747 0.93457 0.94113 0.98333 1.21477 0.96014 1.01148 1.37818 0.92090 1.25789 0.96221 1.01250 0.95629 1.70109 1.02295 1.38898 1.44746 0.85620 0.77126 0.80372 0.78907 1.20468 1.21483 1.18659 1.22539 0.98399 0.91575 1.01723 1.21903 1.02382 0.94699 0.82344 1.21956 1.01350 0.93007 0.99921 1.21101 1.04389 0.95399 0.87989 0.83897 1.23669 0.75687 0.82035 0.85523 1.90695 1.37564 1.27670 1.87611 1.84494 1.72534 1.58375 1.16938 0.93965 0.91662 0.93778 0.90881 0.88576 0.75481 0.93483 0.92409 0.94526 0.94301 0.93283 0.90633 0.91960 0.87665 0.89282 0.92222 0.86834 0.71271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.40 71.98 0.60 -2.76 16 2 C -0.08 -1.32 2.35 -10.72 -0.03 -1.34 16 3 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16 4 C 0.14 2.41 5.81 86.36 0.50 2.91 16 5 N -0.63 -12.63 2.41 -836.88 -2.02 -14.65 16 6 C 0.70 21.02 8.28 179.05 1.48 22.50 16 7 O -0.64 -24.91 15.43 -3.97 -0.06 -24.97 16 8 N -0.73 -20.80 4.91 -454.35 -2.23 -23.03 16 9 C 0.17 6.10 3.27 45.71 0.15 6.25 16 10 H 0.07 2.65 7.54 -2.39 -0.02 2.63 16 11 C -0.12 -4.93 6.59 31.32 0.21 -4.72 16 12 C -0.09 -4.14 5.57 31.67 0.18 -3.96 16 13 C 0.04 1.98 2.81 -10.25 -0.03 1.95 16 14 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 15 C -0.53 -27.94 8.55 25.60 0.22 -27.72 16 16 H 0.06 3.09 7.78 -2.91 -0.02 3.07 16 17 C 0.01 0.53 5.33 84.66 0.45 0.98 16 18 N -0.92 -53.49 12.02 21.45 0.26 -53.23 16 19 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 C -0.10 -3.96 5.95 31.67 0.19 -3.77 16 24 C 0.11 1.29 6.43 86.36 0.56 1.85 16 25 C -0.12 -1.34 4.96 30.67 0.15 -1.18 16 26 C -0.07 -0.77 2.37 -11.52 -0.03 -0.79 16 27 H 0.14 0.74 8.14 -2.38 -0.02 0.72 16 28 C 0.49 6.82 7.34 71.24 0.52 7.35 16 29 O -0.54 -11.61 14.51 21.96 0.32 -11.29 16 30 O -0.51 -4.50 13.30 -51.39 -0.68 -5.18 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.56 5.65 -2.39 -0.01 1.55 16 33 H 0.04 1.07 5.97 -2.39 -0.01 1.06 16 34 H 0.07 1.75 7.04 -2.38 -0.02 1.73 16 35 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.41 9.21 5.80 -92.71 -0.54 8.67 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.06 2.17 7.92 -2.38 -0.02 2.16 16 39 H 0.04 1.93 7.37 -2.39 -0.02 1.91 16 40 H 0.04 1.84 8.04 -2.39 -0.02 1.82 16 41 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.08 2.62 7.63 -2.39 -0.02 2.61 16 43 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.09 1.04 5.57 -2.39 -0.01 1.03 16 46 H 0.06 0.93 6.34 -2.39 -0.02 0.91 16 47 H 0.11 0.75 8.08 -2.39 -0.02 0.74 16 48 H 0.43 0.79 9.10 -74.05 -0.67 0.11 16 Total: -1.00 -74.20 370.64 2.52 -71.69 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.22 Total: 18.41 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 5.13 Total: -2.47 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -3.99 Total: -90.90 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.43 Total: -41.44 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -74.20 2.52 -71.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599864388.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.829 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds