Wall clock time and date at job start Tue Mar 31 2020 14:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47154 * 2 1 4 4 C 1.52998 * 109.47236 * 240.00262 * 2 1 3 5 5 C 1.50707 * 109.47117 * 64.99953 * 4 2 1 6 6 H 1.08002 * 119.99865 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00265 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00225 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47468 * 89.99478 * 9 7 5 11 11 H 1.48504 * 109.47246 * 209.99980 * 9 7 5 12 12 H 1.48504 * 109.46913 * 329.99889 * 9 7 5 13 13 C 1.52996 * 109.47178 * 120.00344 * 2 1 3 14 14 N 1.46901 * 109.47298 * 295.00150 * 13 2 1 15 15 C 1.46952 * 111.00087 * 170.00175 * 14 13 2 16 16 C 1.53050 * 109.36377 * 183.18756 * 15 14 13 17 17 N 1.46957 * 109.36239 * 301.59662 * 16 15 14 18 18 C 1.39841 * 110.99864 * 183.19214 * 17 16 15 19 19 C 1.38813 * 120.06319 * 299.99703 * 18 17 16 20 20 C 1.38355 * 119.92381 * 180.02562 * 19 18 17 21 21 F 1.35103 * 119.96545 * 179.97438 * 20 19 18 22 22 C 1.38483 * 120.06255 * 359.97438 * 20 19 18 23 23 C 1.38281 * 120.13330 * 0.02562 * 22 20 19 24 24 C 1.38268 * 120.07284 * 0.02562 * 23 22 20 25 25 F 1.35104 * 120.02666 * 180.02562 * 24 23 22 26 26 C 1.46948 * 110.88268 * 59.32042 * 17 16 15 27 27 C 1.46957 * 110.99652 * 293.79899 * 14 13 2 28 28 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47317 * 299.99753 * 1 2 3 30 30 H 1.09002 * 109.47057 * 59.99635 * 1 2 3 31 31 H 1.09002 * 109.47669 * 184.99608 * 4 2 1 32 32 H 1.08998 * 109.47418 * 305.00347 * 4 2 1 33 33 H 0.97003 * 119.99534 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47137 * 175.00068 * 13 2 1 35 35 H 1.08997 * 109.47426 * 55.00045 * 13 2 1 36 36 H 1.08999 * 109.48975 * 63.21938 * 15 14 13 37 37 H 1.09001 * 109.49010 * 303.15382 * 15 14 13 38 38 H 1.09004 * 109.48939 * 181.62836 * 16 15 14 39 39 H 1.08993 * 109.49263 * 61.56094 * 16 15 14 40 40 H 1.07998 * 120.03923 * 0.27401 * 19 18 17 41 41 H 1.07999 * 119.93158 * 180.02562 * 22 20 19 42 42 H 1.07999 * 119.95716 * 180.02562 * 23 22 20 43 43 H 1.08999 * 109.49097 * 60.64756 * 26 17 16 44 44 H 1.09001 * 109.49273 * 180.70998 * 26 17 16 45 45 H 1.09002 * 109.49118 * 296.78083 * 27 14 13 46 46 H 1.09001 * 109.49308 * 56.81978 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6755 -1.5190 -3.8513 9 14 1.4987 0.5632 -5.2496 10 1 2.5647 1.5421 -5.5823 11 1 1.3109 -0.3706 -6.3890 12 1 0.2281 1.2854 -4.9869 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0373 2.4456 15 6 1.9126 -0.7363 3.6675 16 6 1.4221 0.0540 4.8830 17 7 2.1078 1.3529 4.9287 18 6 1.7380 2.0750 6.0677 19 6 0.4084 2.4173 6.2727 20 6 0.0458 3.1322 7.4004 21 9 -1.2479 3.4662 7.6005 22 6 1.0076 3.5058 8.3240 23 6 2.3328 3.1661 8.1222 24 6 2.7015 2.4526 6.9967 25 9 3.9964 2.1209 6.8008 26 6 1.8467 2.1264 3.7069 27 6 2.3371 1.3362 2.4914 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1263 -0.7994 -1.2057 32 1 1.6054 -1.7197 -1.2953 33 1 2.9221 -1.8422 -4.7320 34 1 3.1263 -0.7995 1.2055 35 1 1.6054 -1.7198 1.2951 36 1 2.9831 -0.9189 3.7604 37 1 1.3841 -1.6882 3.6152 38 1 1.6410 -0.5051 5.7927 39 1 0.3468 0.2132 4.8035 40 1 -0.3426 2.1224 5.5549 41 1 0.7221 4.0634 9.2037 42 1 3.0804 3.4585 8.8446 43 1 0.7762 2.3092 3.6140 44 1 2.3752 3.0783 3.7591 45 1 3.4125 1.1771 2.5709 46 1 2.1186 1.8951 1.5815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602467436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:12 Heat of formation + Delta-G solvation = -58.430784 kcal Electronic energy + Delta-G solvation = -27410.381981 eV Core-core repulsion = 23356.647555 eV Total energy + Delta-G solvation = -4053.734426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.171 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.29900 -49.05627 -40.38504 -38.51856 -36.33583 -34.12159 -32.09693 -31.04789 -30.78417 -30.03729 -27.30142 -26.55189 -24.65160 -23.74436 -23.49764 -22.53724 -22.01375 -19.86179 -18.83278 -18.32306 -17.68464 -17.46566 -16.51887 -16.23971 -16.07603 -15.65543 -15.06662 -14.98050 -14.76345 -14.65076 -14.63569 -14.51143 -14.26366 -14.07088 -13.67070 -13.22885 -12.79273 -12.54843 -12.40765 -12.30477 -12.12415 -11.79979 -11.57544 -11.38378 -11.31337 -11.08739 -10.87660 -10.82806 -10.71011 -10.28490 -10.22802 -9.62164 -9.53356 -9.13453 -8.96915 -8.89885 -8.85609 -8.32256 -8.06547 -5.97208 -3.98257 0.50190 0.55356 2.88728 3.29286 3.33082 3.39535 3.42694 3.77258 3.87304 4.06656 4.20319 4.43611 4.48664 4.63620 4.73462 4.96149 5.01929 5.12090 5.21820 5.28961 5.38717 5.41659 5.45856 5.52713 5.59369 5.62317 5.65105 5.70876 5.83505 5.89081 5.99231 6.05905 6.16204 6.23308 6.38121 6.53017 6.59363 6.68310 6.88404 7.00955 7.11673 7.20165 7.33558 7.40014 7.69977 7.85766 8.03021 8.46941 9.08094 9.65114 11.14325 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.022876 B = 0.002346 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.722024 B =11932.134163 C =12321.022948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.062 3.938 14 N -0.536 5.536 15 C 0.056 3.944 16 C 0.063 3.937 17 N -0.501 5.501 18 C 0.089 3.911 19 C -0.155 4.155 20 C 0.097 3.903 21 F -0.135 7.135 22 C -0.130 4.130 23 C -0.123 4.123 24 C 0.115 3.885 25 F -0.122 7.122 26 C 0.063 3.937 27 C 0.055 3.945 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.016 0.984 33 H 0.259 0.741 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.467 8.092 26.563 27.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.261 5.261 15 C -0.072 4.072 16 C -0.063 4.063 17 N -0.223 5.223 18 C -0.007 4.007 19 C -0.176 4.176 20 C 0.077 3.923 21 F -0.114 7.114 22 C -0.148 4.148 23 C -0.142 4.142 24 C 0.094 3.906 25 F -0.100 7.100 26 C -0.063 4.063 27 C -0.074 4.074 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.383 7.941 26.388 27.660 hybrid contribution -0.175 0.409 -0.941 1.041 sum -2.558 8.350 25.448 26.904 Atomic orbital electron populations 1.21572 0.95792 1.00487 1.00043 1.21220 0.95901 0.99038 0.93768 0.92617 1.19127 0.95916 0.95569 0.90450 1.21225 1.34578 1.08222 0.90970 0.92611 1.25020 0.95370 0.95088 0.99091 1.69968 1.39131 1.21207 1.23356 0.86638 0.78912 0.79820 0.82893 1.20767 1.21313 1.19905 1.22313 0.97799 0.97150 0.89273 1.62226 1.57900 1.03819 1.02164 1.22128 0.99628 0.96445 0.89047 1.22285 0.96661 0.88484 0.98865 1.59873 1.58229 1.03864 1.00378 1.18636 0.90435 0.98049 0.93554 1.21659 0.97410 1.00382 0.98131 1.17541 0.78872 0.99883 0.95979 1.91533 1.34303 1.90584 1.94976 1.21006 0.91779 1.02032 1.00027 1.20962 0.96798 0.99323 0.97157 1.17589 0.78838 0.99255 0.94932 1.91540 1.33191 1.90349 1.94936 1.22314 1.00166 0.96224 0.87556 1.22197 0.96624 0.91220 0.97310 0.94223 0.94101 0.92803 0.96941 0.96595 0.93111 0.95114 0.91213 0.94020 0.89984 0.90295 0.93184 0.83758 0.83672 0.83366 0.93137 0.90193 0.93961 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.89 37.16 0.33 -1.99 16 2 C -0.08 -1.61 2.26 -90.62 -0.21 -1.81 16 3 H 0.06 1.13 6.28 -51.93 -0.33 0.80 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.24 8.41 -34.44 -0.29 -14.53 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.04 4.35 -3.83 -0.02 1.03 16 14 N -0.54 -7.67 4.16 -234.47 -0.98 -8.65 16 15 C 0.06 0.68 5.61 -3.77 -0.02 0.66 16 16 C 0.06 0.68 5.31 -3.77 -0.02 0.66 16 17 N -0.50 -5.67 4.52 -170.89 -0.77 -6.44 16 18 C 0.09 0.90 4.73 -83.68 -0.40 0.50 16 19 C -0.15 -1.42 8.62 -39.33 -0.34 -1.76 16 20 C 0.10 0.83 7.30 -39.45 -0.29 0.54 16 21 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 22 C -0.13 -0.87 10.02 -39.48 -0.40 -1.27 16 23 C -0.12 -0.86 10.02 -39.55 -0.40 -1.26 16 24 C 0.11 1.10 7.31 -39.26 -0.29 0.82 16 25 F -0.12 -1.38 17.08 2.25 0.04 -1.35 16 26 C 0.06 0.73 5.36 -3.77 -0.02 0.71 16 27 C 0.05 0.74 5.42 -3.77 -0.02 0.72 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.70 7.75 -51.93 -0.40 0.29 16 30 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 35 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 39 H 0.05 0.53 7.24 -51.93 -0.38 0.15 16 40 H 0.14 1.30 7.06 -52.49 -0.37 0.92 16 41 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.05 0.58 7.45 -51.93 -0.39 0.19 16 44 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 1.32 6.25 -51.93 -0.32 1.00 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -30.11 372.31 -10.04 -40.15 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -7.11 Total: -3.61 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -2.59 Total: -14.93 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -1.01 Total: -41.31 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.08 Total: -2.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.11 -10.04 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602467436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.278 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds