Wall clock time and date at job start Tue Mar 31 2020 14:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47154 * 2 1 4 4 C 1.52998 * 109.47236 * 240.00262 * 2 1 3 5 5 C 1.50707 * 109.47117 * 64.99953 * 4 2 1 6 6 H 1.08002 * 119.99865 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00265 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00225 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47468 * 89.99478 * 9 7 5 11 11 H 1.48504 * 109.47246 * 209.99980 * 9 7 5 12 12 H 1.48504 * 109.46913 * 329.99889 * 9 7 5 13 13 C 1.52996 * 109.47178 * 120.00344 * 2 1 3 14 14 N 1.46901 * 109.47298 * 295.00150 * 13 2 1 15 15 C 1.46952 * 111.00087 * 170.00175 * 14 13 2 16 16 C 1.53050 * 109.36377 * 183.18756 * 15 14 13 17 17 N 1.46957 * 109.36239 * 301.59662 * 16 15 14 18 18 C 1.39841 * 110.99864 * 183.19214 * 17 16 15 19 19 C 1.38813 * 120.06319 * 299.99703 * 18 17 16 20 20 C 1.38355 * 119.92381 * 180.02562 * 19 18 17 21 21 F 1.35103 * 119.96545 * 179.97438 * 20 19 18 22 22 C 1.38483 * 120.06255 * 359.97438 * 20 19 18 23 23 C 1.38281 * 120.13330 * 0.02562 * 22 20 19 24 24 C 1.38268 * 120.07284 * 0.02562 * 23 22 20 25 25 F 1.35104 * 120.02666 * 180.02562 * 24 23 22 26 26 C 1.46948 * 110.88268 * 59.32042 * 17 16 15 27 27 C 1.46957 * 110.99652 * 293.79899 * 14 13 2 28 28 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47317 * 299.99753 * 1 2 3 30 30 H 1.09002 * 109.47057 * 59.99635 * 1 2 3 31 31 H 1.09002 * 109.47669 * 184.99608 * 4 2 1 32 32 H 1.08998 * 109.47418 * 305.00347 * 4 2 1 33 33 H 0.97003 * 119.99534 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47137 * 175.00068 * 13 2 1 35 35 H 1.08997 * 109.47426 * 55.00045 * 13 2 1 36 36 H 1.08999 * 109.48975 * 63.21938 * 15 14 13 37 37 H 1.09001 * 109.49010 * 303.15382 * 15 14 13 38 38 H 1.09004 * 109.48939 * 181.62836 * 16 15 14 39 39 H 1.08993 * 109.49263 * 61.56094 * 16 15 14 40 40 H 1.07998 * 120.03923 * 0.27401 * 19 18 17 41 41 H 1.07999 * 119.93158 * 180.02562 * 22 20 19 42 42 H 1.07999 * 119.95716 * 180.02562 * 23 22 20 43 43 H 1.08999 * 109.49097 * 60.64756 * 26 17 16 44 44 H 1.09001 * 109.49273 * 180.70998 * 26 17 16 45 45 H 1.09002 * 109.49118 * 296.78083 * 27 14 13 46 46 H 1.09001 * 109.49308 * 56.81978 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6755 -1.5190 -3.8513 9 14 1.4987 0.5632 -5.2496 10 1 2.5647 1.5421 -5.5823 11 1 1.3109 -0.3706 -6.3890 12 1 0.2281 1.2854 -4.9869 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0373 2.4456 15 6 1.9126 -0.7363 3.6675 16 6 1.4221 0.0540 4.8830 17 7 2.1078 1.3529 4.9287 18 6 1.7380 2.0750 6.0677 19 6 0.4084 2.4173 6.2727 20 6 0.0458 3.1322 7.4004 21 9 -1.2479 3.4662 7.6005 22 6 1.0076 3.5058 8.3240 23 6 2.3328 3.1661 8.1222 24 6 2.7015 2.4526 6.9967 25 9 3.9964 2.1209 6.8008 26 6 1.8467 2.1264 3.7069 27 6 2.3371 1.3362 2.4914 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1263 -0.7994 -1.2057 32 1 1.6054 -1.7197 -1.2953 33 1 2.9221 -1.8422 -4.7320 34 1 3.1263 -0.7995 1.2055 35 1 1.6054 -1.7198 1.2951 36 1 2.9831 -0.9189 3.7604 37 1 1.3841 -1.6882 3.6152 38 1 1.6410 -0.5051 5.7927 39 1 0.3468 0.2132 4.8035 40 1 -0.3426 2.1224 5.5549 41 1 0.7221 4.0634 9.2037 42 1 3.0804 3.4585 8.8446 43 1 0.7762 2.3092 3.6140 44 1 2.3752 3.0783 3.7591 45 1 3.4125 1.1771 2.5709 46 1 2.1186 1.8951 1.5815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602467436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:11 Heat of formation + Delta-G solvation = -74.946917 kcal Electronic energy + Delta-G solvation = -27411.098174 eV Core-core repulsion = 23356.647555 eV Total energy + Delta-G solvation = -4054.450619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.171 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.97338 -49.82114 -41.22660 -39.46735 -37.56045 -35.64615 -33.98505 -32.01912 -31.53392 -30.86567 -28.97636 -27.94487 -26.07819 -24.73643 -24.52005 -23.79932 -22.95276 -20.90218 -20.42952 -19.04496 -18.52047 -18.37511 -18.15444 -17.14904 -16.96875 -16.55506 -16.39154 -16.18889 -15.87316 -15.75720 -15.60969 -15.45107 -15.32629 -15.10108 -14.70218 -14.34607 -14.16768 -13.95200 -13.52703 -13.38689 -13.26508 -13.12532 -12.82300 -12.76922 -12.51584 -12.49401 -12.33936 -12.30306 -12.14200 -11.89993 -11.80777 -11.36083 -11.05317 -10.86465 -10.52568 -10.17116 -9.74982 -9.55345 -9.27724 -8.17021 -6.25884 -0.13950 -0.07147 1.40208 1.40998 1.52010 2.26411 2.41995 2.50959 2.90210 3.14485 3.16534 3.20085 3.59098 3.80771 3.89421 3.92826 4.04391 4.09093 4.22101 4.24446 4.33540 4.42029 4.43565 4.52271 4.57298 4.73911 4.77641 4.85898 4.86853 4.88895 4.91810 4.93015 4.95938 5.02966 5.08820 5.09806 5.28802 5.47428 5.51394 5.55109 5.59548 5.69848 5.81602 5.89664 6.00818 6.15375 6.17529 6.32109 6.90154 7.42302 8.95063 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.022876 B = 0.002346 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.722024 B =11932.134163 C =12321.022948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.070 4.070 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.526 4.526 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.074 3.926 14 N -0.534 5.534 15 C 0.056 3.944 16 C 0.069 3.931 17 N -0.511 5.511 18 C 0.074 3.926 19 C -0.157 4.157 20 C 0.089 3.911 21 F -0.142 7.142 22 C -0.116 4.116 23 C -0.110 4.110 24 C 0.097 3.903 25 F -0.137 7.137 26 C 0.072 3.928 27 C 0.056 3.944 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.036 0.964 31 H -0.016 1.016 32 H -0.009 1.009 33 H 0.261 0.739 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.143 0.857 41 H 0.175 0.825 42 H 0.176 0.824 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.031 0.969 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 9.725 28.458 30.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.054 4.054 14 N -0.259 5.259 15 C -0.072 4.072 16 C -0.057 4.057 17 N -0.233 5.233 18 C -0.021 4.021 19 C -0.178 4.178 20 C 0.069 3.931 21 F -0.120 7.120 22 C -0.134 4.134 23 C -0.129 4.129 24 C 0.077 3.923 25 F -0.115 7.115 26 C -0.054 4.054 27 C -0.072 4.072 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.002 0.998 32 H 0.009 0.991 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.160 0.840 41 H 0.193 0.807 42 H 0.194 0.806 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.049 0.951 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.410 9.586 28.306 30.079 hybrid contribution 0.161 -0.095 -1.445 1.457 sum -3.249 9.491 26.861 28.673 Atomic orbital electron populations 1.21451 0.94595 1.00396 1.00319 1.21010 0.96699 0.98425 0.92791 0.92772 1.19015 0.93975 0.94752 0.92764 1.21625 1.34315 1.08484 0.92027 0.92121 1.25946 0.95328 0.96095 1.02638 1.70105 1.40380 1.22937 1.24230 0.85523 0.79012 0.78389 0.78601 1.19967 1.20961 1.18714 1.22022 0.96835 0.97119 0.89399 1.62189 1.57727 1.03995 1.01946 1.22201 0.99400 0.96996 0.88591 1.22239 0.96712 0.88336 0.98391 1.59818 1.58672 1.04156 1.00669 1.18625 0.90992 0.99031 0.93448 1.21596 0.96925 1.00719 0.98548 1.17716 0.78973 1.00121 0.96314 1.91521 1.34846 1.90663 1.95006 1.21324 0.91045 1.00873 1.00177 1.21247 0.97523 0.97728 0.96439 1.17891 0.78178 1.00291 0.95976 1.91504 1.34171 1.90678 1.95148 1.22188 1.00227 0.96050 0.86941 1.22178 0.95978 0.90988 0.98102 0.94472 0.91685 0.94481 0.99798 0.99090 0.92983 0.96380 0.91056 0.94851 0.88931 0.89024 0.92790 0.83965 0.80736 0.80621 0.92846 0.89563 0.95114 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.16 8.89 71.98 0.64 -3.52 16 2 C -0.07 -2.86 2.26 -10.80 -0.02 -2.89 16 3 H 0.05 2.22 6.28 -2.39 -0.02 2.21 16 4 C 0.03 1.71 4.45 29.85 0.13 1.85 16 5 C -0.53 -29.82 8.41 25.60 0.22 -29.61 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 8 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.07 2.54 4.35 86.30 0.38 2.92 16 14 N -0.53 -15.03 4.16 -895.73 -3.73 -18.76 16 15 C 0.06 1.33 5.61 86.31 0.48 1.81 16 16 C 0.07 1.40 5.31 86.31 0.46 1.85 16 17 N -0.51 -11.04 4.52 -694.58 -3.14 -14.18 16 18 C 0.07 1.40 4.73 38.20 0.18 1.58 16 19 C -0.16 -2.63 8.62 22.44 0.19 -2.43 16 20 C 0.09 1.32 7.30 22.36 0.16 1.48 16 21 F -0.14 -2.40 17.27 44.97 0.78 -1.62 16 22 C -0.12 -1.17 10.02 22.34 0.22 -0.95 16 23 C -0.11 -1.21 10.02 22.29 0.22 -0.99 16 24 C 0.10 1.70 7.31 22.48 0.16 1.87 16 25 F -0.14 -2.96 17.08 44.97 0.77 -2.19 16 26 C 0.07 1.61 5.36 86.31 0.46 2.07 16 27 C 0.06 1.51 5.42 86.31 0.47 1.98 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 2.13 7.75 -2.39 -0.02 2.11 16 30 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 31 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 35 H 0.07 2.42 8.03 -2.39 -0.02 2.40 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.99 8.07 -2.39 -0.02 1.97 16 38 H 0.09 1.62 8.13 -2.39 -0.02 1.60 16 39 H 0.05 1.05 7.24 -2.39 -0.02 1.04 16 40 H 0.14 2.37 7.06 -2.91 -0.02 2.35 16 41 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 42 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 43 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 44 H 0.09 1.80 8.13 -2.39 -0.02 1.78 16 45 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 2.37 6.25 -2.39 -0.01 2.36 16 Total: -1.00 -65.72 372.31 2.78 -62.95 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 0.97 Total: 7.02 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 4.82 Total: -22.69 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -6.58 Total: -90.18 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 1.54 Total: -3.81 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -65.72 2.78 -62.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602467436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.001 kcal (2) G-P(sol) polarization free energy of solvation -65.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds