Wall clock time and date at job start Tue Mar 31 2020 14:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46733 * 2 1 4 4 C 1.52995 * 109.47271 * 119.99312 * 2 1 3 5 5 C 1.50694 * 109.47412 * 295.00438 * 4 2 1 6 6 H 1.08000 * 120.00424 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99904 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00266 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99780 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47146 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46786 * 120.00856 * 9 7 5 12 12 H 1.48501 * 109.47255 * 240.00235 * 9 7 5 13 13 C 1.52999 * 109.47014 * 239.99932 * 2 1 3 14 14 N 1.46902 * 109.47066 * 64.99975 * 13 2 1 15 15 C 1.46899 * 110.99903 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47261 * 179.97438 * 15 14 13 17 17 H 1.08998 * 109.47064 * 295.64415 * 16 15 14 18 18 N 1.46893 * 109.47021 * 55.64846 * 16 15 14 19 19 C 1.47013 * 111.00289 * 73.22371 * 18 16 15 20 20 C 1.53094 * 109.29419 * 182.36899 * 19 18 16 21 21 O 1.43017 * 109.25825 * 303.21770 * 20 19 18 22 22 C 1.43017 * 113.77737 * 58.60119 * 21 20 19 23 23 C 1.47013 * 110.99903 * 196.85716 * 18 16 15 24 24 C 1.52998 * 109.47197 * 175.64992 * 16 15 14 25 25 F 1.39905 * 109.47210 * 306.11745 * 24 16 15 26 26 F 1.39903 * 109.47296 * 66.11320 * 24 16 15 27 27 F 1.39897 * 109.47361 * 186.11629 * 24 16 15 28 28 H 1.08995 * 109.47066 * 299.99757 * 1 2 3 29 29 H 1.09001 * 109.47015 * 60.00458 * 1 2 3 30 30 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.46626 * 55.00448 * 4 2 1 32 32 H 1.08998 * 109.47220 * 174.99821 * 4 2 1 33 33 H 0.96996 * 120.00569 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46916 * 304.99580 * 13 2 1 35 35 H 1.09006 * 109.46710 * 184.99358 * 13 2 1 36 36 H 1.00898 * 110.99840 * 303.95088 * 14 13 2 37 37 H 1.09010 * 109.47173 * 59.99777 * 15 14 13 38 38 H 1.09001 * 109.47179 * 299.99947 * 15 14 13 39 39 H 1.08994 * 109.50503 * 302.32679 * 19 18 16 40 40 H 1.09000 * 109.50597 * 62.41283 * 19 18 16 41 41 H 1.09001 * 109.50622 * 63.11035 * 20 19 18 42 42 H 1.09006 * 109.50658 * 183.23744 * 20 19 18 43 43 H 1.08993 * 109.50822 * 181.42299 * 22 21 20 44 44 H 1.09000 * 109.53942 * 61.31199 * 22 21 20 45 45 H 1.08999 * 109.51114 * 297.54379 * 23 18 16 46 46 H 1.09004 * 109.50894 * 57.62779 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6414 0.0572 2.4765 6 1 1.0799 0.9743 2.3757 7 6 1.9924 -0.4020 3.7283 8 7 2.6757 -1.5190 3.8513 9 14 1.4988 0.5632 5.2496 10 1 0.7423 1.7746 4.8433 11 1 0.6443 -0.2854 6.1184 12 1 2.7171 0.9672 5.9965 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1257 -0.6265 -3.6671 16 6 1.7023 0.1908 -4.8892 17 1 0.6147 0.2025 -4.9594 18 7 2.1992 1.5665 -4.7542 19 6 3.6522 1.6256 -4.9705 20 6 4.1365 3.0630 -4.7629 21 8 3.4214 3.9335 -5.6439 22 6 2.0034 3.9018 -5.4603 23 6 1.4983 2.4726 -5.6756 24 6 2.2880 -0.4413 -6.1534 25 9 3.6719 -0.5841 -6.0053 26 9 1.7088 -1.6983 -6.3577 27 9 2.0191 0.3804 -7.2533 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7197 1.2952 32 1 3.1264 -0.7993 1.2056 33 1 2.9230 -1.8419 4.7318 34 1 1.6054 -1.7198 -1.2950 35 1 3.1264 -0.7994 -1.2056 36 1 0.6528 0.1792 -2.4753 37 1 1.6921 -1.6247 -3.7300 38 1 3.2127 -0.7037 -3.6400 39 1 4.1528 0.9668 -4.2610 40 1 3.8820 1.3073 -5.9873 41 1 3.9559 3.3624 -3.7305 42 1 5.2034 3.1222 -4.9784 43 1 1.5282 4.5681 -6.1801 44 1 1.7595 4.2255 -4.4485 45 1 1.6936 2.1687 -6.7040 46 1 0.4265 2.4316 -5.4814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602652252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:21 Heat of formation + Delta-G solvation = -191.604044 kcal Electronic energy + Delta-G solvation = -29481.901897 eV Core-core repulsion = 24991.623420 eV Total energy + Delta-G solvation = -4490.278476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.57976 -48.02659 -47.97333 -39.87357 -37.53850 -36.15412 -33.84415 -32.12708 -31.41517 -30.44292 -27.03870 -26.41101 -26.05705 -24.47367 -24.23849 -22.24906 -21.68566 -20.91541 -19.04792 -18.89988 -18.75521 -17.74322 -16.93352 -16.43546 -16.25512 -15.59838 -15.39272 -15.31347 -14.98115 -14.75464 -14.66572 -14.64920 -14.33640 -14.17352 -14.09545 -13.86011 -13.78303 -13.46707 -13.19829 -12.63786 -12.43693 -12.34301 -12.15052 -12.00179 -11.70527 -11.41732 -11.34258 -11.30442 -10.88283 -10.78397 -10.75018 -10.33229 -10.21595 -9.91926 -9.72643 -9.16958 -8.96288 -8.70970 -8.33342 -8.15925 -5.97828 -3.98846 2.35513 3.08161 3.32079 3.37721 3.39917 3.43825 3.60355 3.67207 3.88598 4.40860 4.45616 4.51860 4.64274 4.71995 4.76689 4.94388 4.99799 5.07964 5.27717 5.31617 5.38253 5.39583 5.49340 5.57829 5.66164 5.74288 5.75868 5.79975 6.04172 6.22800 6.38034 6.45587 6.51065 6.54519 6.90752 6.93280 7.10054 7.16471 7.29749 7.58921 7.70037 7.85646 8.02553 8.46357 9.07864 9.64738 11.13738 Molecular weight = 324.18amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.002860 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.325809 B = 9788.698398 C =10633.110818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.067 0.933 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.665 5.665 15 C 0.066 3.934 16 C 0.051 3.949 17 H 0.122 0.878 18 N -0.488 5.488 19 C 0.000 4.000 20 C 0.066 3.934 21 O -0.387 6.387 22 C 0.067 3.933 23 C -0.008 4.008 24 C 0.418 3.582 25 F -0.178 7.178 26 F -0.183 7.183 27 F -0.182 7.182 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.014 0.986 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.339 0.661 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 5.183 -23.425 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 H 0.085 0.915 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.296 5.296 15 C -0.065 4.065 16 C -0.061 4.061 17 H 0.140 0.860 18 N -0.210 5.210 19 C -0.127 4.127 20 C -0.011 4.011 21 O -0.306 6.306 22 C -0.010 4.010 23 C -0.135 4.135 24 C 0.361 3.639 25 F -0.159 7.159 26 F -0.165 7.165 27 F -0.163 7.163 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.158 0.842 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.051 5.787 -22.926 23.669 hybrid contribution -0.734 -1.049 -0.005 1.281 sum -1.785 4.737 -22.931 23.483 Atomic orbital electron populations 1.21740 0.96716 1.00344 1.00298 1.21197 0.94808 1.00151 0.93919 0.91501 1.19115 0.96132 0.95350 0.90409 1.21272 1.34517 1.08254 0.90957 0.92504 1.25020 0.95348 0.95077 0.99109 1.69970 1.39164 1.21281 1.23267 0.86584 0.78262 0.80137 0.83313 1.19736 1.21153 1.21086 1.22173 1.00445 0.94335 0.89406 1.60390 1.19625 1.49681 0.99943 1.21897 1.01978 0.93781 0.88821 1.23295 1.02222 0.90341 0.90290 0.85974 1.62284 1.04726 1.03176 1.50818 1.23338 0.87879 0.99739 1.01764 1.22677 0.96252 0.87522 0.94691 1.87969 1.18245 1.64138 1.60218 1.22610 0.81379 0.94745 1.02250 1.23297 0.99726 0.94345 0.96159 1.22266 0.76915 0.77072 0.87630 1.93158 1.31555 1.95518 1.95681 1.93195 1.84169 1.43330 1.95813 1.93103 1.93615 1.71639 1.57989 0.91890 0.94934 0.94113 0.96808 0.96680 0.93162 0.95863 0.91428 0.84196 0.93870 0.89864 0.88359 0.92765 0.91493 0.88348 0.88488 0.91800 0.91802 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.77 37.16 0.33 -2.05 16 2 C -0.08 -1.60 2.54 -90.62 -0.23 -1.83 16 3 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.56 16 5 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 14 N -0.66 -8.68 6.24 -113.77 -0.71 -9.39 16 15 C 0.07 0.72 4.82 -3.83 -0.02 0.70 16 16 C 0.05 0.48 2.19 -67.72 -0.15 0.33 16 17 H 0.12 0.97 7.91 -51.93 -0.41 0.56 16 18 N -0.49 -4.87 4.37 -226.34 -0.99 -5.86 16 19 C 0.00 0.00 4.07 -3.71 -0.02 -0.01 16 20 C 0.07 0.66 7.01 37.21 0.26 0.92 16 21 O -0.39 -4.29 10.82 -35.23 -0.38 -4.67 16 22 C 0.07 0.60 7.01 37.21 0.26 0.86 16 23 C -0.01 -0.07 5.29 -3.71 -0.02 -0.09 16 24 C 0.42 4.18 2.36 37.16 0.09 4.26 16 25 F -0.18 -1.90 13.09 2.25 0.03 -1.88 16 26 F -0.18 -1.93 17.11 2.25 0.04 -1.90 16 27 F -0.18 -1.86 13.80 2.25 0.03 -1.83 16 28 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 29 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.34 4.18 6.98 -39.29 -0.27 3.91 16 37 H 0.04 0.46 8.07 -51.92 -0.42 0.04 16 38 H 0.08 0.96 6.33 -51.93 -0.33 0.63 16 39 H 0.10 1.04 6.56 -51.93 -0.34 0.70 16 40 H 0.05 0.58 5.43 -51.93 -0.28 0.30 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.59 5.42 -51.93 -0.28 0.31 16 46 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -30.03 362.25 -8.03 -38.05 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.19 Total: -0.20 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -0.03 Total: -8.26 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.96 Total: -41.29 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.38 Total: -4.67 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.10 Total: -5.60 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.03 -8.03 -38.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602652252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.551 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds