Wall clock time and date at job start Tue Mar 31 2020 14:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46733 * 2 1 4 4 C 1.52995 * 109.47271 * 119.99312 * 2 1 3 5 5 C 1.50694 * 109.47412 * 295.00438 * 4 2 1 6 6 H 1.08000 * 120.00424 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99904 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00266 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99780 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47146 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46786 * 120.00856 * 9 7 5 12 12 H 1.48501 * 109.47255 * 240.00235 * 9 7 5 13 13 C 1.52999 * 109.47014 * 239.99932 * 2 1 3 14 14 N 1.46902 * 109.47066 * 64.99975 * 13 2 1 15 15 C 1.46899 * 110.99903 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47261 * 179.97438 * 15 14 13 17 17 H 1.08998 * 109.47064 * 295.64415 * 16 15 14 18 18 N 1.46893 * 109.47021 * 55.64846 * 16 15 14 19 19 C 1.47013 * 111.00289 * 73.22371 * 18 16 15 20 20 C 1.53094 * 109.29419 * 182.36899 * 19 18 16 21 21 O 1.43017 * 109.25825 * 303.21770 * 20 19 18 22 22 C 1.43017 * 113.77737 * 58.60119 * 21 20 19 23 23 C 1.47013 * 110.99903 * 196.85716 * 18 16 15 24 24 C 1.52998 * 109.47197 * 175.64992 * 16 15 14 25 25 F 1.39905 * 109.47210 * 306.11745 * 24 16 15 26 26 F 1.39903 * 109.47296 * 66.11320 * 24 16 15 27 27 F 1.39897 * 109.47361 * 186.11629 * 24 16 15 28 28 H 1.08995 * 109.47066 * 299.99757 * 1 2 3 29 29 H 1.09001 * 109.47015 * 60.00458 * 1 2 3 30 30 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.46626 * 55.00448 * 4 2 1 32 32 H 1.08998 * 109.47220 * 174.99821 * 4 2 1 33 33 H 0.96996 * 120.00569 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46916 * 304.99580 * 13 2 1 35 35 H 1.09006 * 109.46710 * 184.99358 * 13 2 1 36 36 H 1.00898 * 110.99840 * 303.95088 * 14 13 2 37 37 H 1.09010 * 109.47173 * 59.99777 * 15 14 13 38 38 H 1.09001 * 109.47179 * 299.99947 * 15 14 13 39 39 H 1.08994 * 109.50503 * 302.32679 * 19 18 16 40 40 H 1.09000 * 109.50597 * 62.41283 * 19 18 16 41 41 H 1.09001 * 109.50622 * 63.11035 * 20 19 18 42 42 H 1.09006 * 109.50658 * 183.23744 * 20 19 18 43 43 H 1.08993 * 109.50822 * 181.42299 * 22 21 20 44 44 H 1.09000 * 109.53942 * 61.31199 * 22 21 20 45 45 H 1.08999 * 109.51114 * 297.54379 * 23 18 16 46 46 H 1.09004 * 109.50894 * 57.62779 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6414 0.0572 2.4765 6 1 1.0799 0.9743 2.3757 7 6 1.9924 -0.4020 3.7283 8 7 2.6757 -1.5190 3.8513 9 14 1.4988 0.5632 5.2496 10 1 0.7423 1.7746 4.8433 11 1 0.6443 -0.2854 6.1184 12 1 2.7171 0.9672 5.9965 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1257 -0.6265 -3.6671 16 6 1.7023 0.1908 -4.8892 17 1 0.6147 0.2025 -4.9594 18 7 2.1992 1.5665 -4.7542 19 6 3.6522 1.6256 -4.9705 20 6 4.1365 3.0630 -4.7629 21 8 3.4214 3.9335 -5.6439 22 6 2.0034 3.9018 -5.4603 23 6 1.4983 2.4726 -5.6756 24 6 2.2880 -0.4413 -6.1534 25 9 3.6719 -0.5841 -6.0053 26 9 1.7088 -1.6983 -6.3577 27 9 2.0191 0.3804 -7.2533 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7197 1.2952 32 1 3.1264 -0.7993 1.2056 33 1 2.9230 -1.8419 4.7318 34 1 1.6054 -1.7198 -1.2950 35 1 3.1264 -0.7994 -1.2056 36 1 0.6528 0.1792 -2.4753 37 1 1.6921 -1.6247 -3.7300 38 1 3.2127 -0.7037 -3.6400 39 1 4.1528 0.9668 -4.2610 40 1 3.8820 1.3073 -5.9873 41 1 3.9559 3.3624 -3.7305 42 1 5.2034 3.1222 -4.9784 43 1 1.5282 4.5681 -6.1801 44 1 1.7595 4.2255 -4.4485 45 1 1.6936 2.1687 -6.7040 46 1 0.4265 2.4316 -5.4814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602652252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:21 Heat of formation + Delta-G solvation = -212.313817 kcal Electronic energy + Delta-G solvation = -29482.799940 eV Core-core repulsion = 24991.623420 eV Total energy + Delta-G solvation = -4491.176519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.37912 -48.82806 -48.77957 -40.64146 -38.65415 -37.31010 -35.35380 -33.86028 -32.15768 -31.48849 -28.86494 -27.45041 -27.04345 -25.76916 -25.10077 -23.87193 -22.52655 -21.68863 -20.61689 -19.69420 -19.59611 -18.65414 -18.39596 -17.68148 -17.16897 -16.57102 -16.48512 -16.36593 -16.07639 -15.77524 -15.61082 -15.48171 -15.43464 -15.15168 -15.07650 -14.98878 -14.75046 -14.41306 -14.37424 -14.02321 -13.91183 -13.32969 -13.29393 -13.12982 -12.96008 -12.86288 -12.73279 -12.50627 -12.21850 -12.15465 -12.04309 -11.85775 -11.52969 -11.43921 -11.02181 -10.91105 -10.68929 -10.51396 -9.48454 -9.24849 -8.15252 -6.23756 1.41267 1.42247 1.54753 1.56428 2.32160 2.43976 2.59118 2.80964 2.95532 3.10960 3.18640 3.46099 3.66551 3.88446 3.95263 3.99397 4.16613 4.25832 4.27071 4.33679 4.36379 4.47488 4.52317 4.59051 4.67588 4.77188 4.81941 4.84147 4.90461 4.93206 5.02724 5.10055 5.28804 5.43945 5.54345 5.58848 5.64428 5.77164 5.84788 5.93515 6.08335 6.19133 6.34539 6.56487 6.93070 7.44595 8.96978 Molecular weight = 324.18amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.002860 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.325809 B = 9788.698398 C =10633.110818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.525 4.525 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.079 3.921 14 N -0.661 5.661 15 C 0.067 3.933 16 C 0.058 3.942 17 H 0.145 0.855 18 N -0.497 5.497 19 C 0.004 3.996 20 C 0.066 3.934 21 O -0.404 6.404 22 C 0.063 3.937 23 C -0.006 4.006 24 C 0.420 3.580 25 F -0.184 7.184 26 F -0.186 7.186 27 F -0.182 7.182 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.039 0.961 31 H -0.011 1.011 32 H -0.015 1.015 33 H 0.261 0.739 34 H 0.024 0.976 35 H 0.055 0.945 36 H 0.348 0.652 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 6.268 -24.348 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.006 4.006 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.207 1.207 13 C -0.050 4.050 14 N -0.293 5.293 15 C -0.063 4.063 16 C -0.054 4.054 17 H 0.163 0.837 18 N -0.219 5.219 19 C -0.124 4.124 20 C -0.011 4.011 21 O -0.323 6.323 22 C -0.014 4.014 23 C -0.133 4.133 24 C 0.363 3.637 25 F -0.166 7.166 26 F -0.168 7.168 27 F -0.164 7.164 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.008 0.992 32 H 0.004 0.996 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.135 0.865 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.525 6.885 -23.871 24.972 hybrid contribution -0.257 -1.394 0.233 1.436 sum -2.783 5.492 -23.638 24.426 Atomic orbital electron populations 1.21645 0.94921 1.00597 1.01143 1.20969 0.96199 0.98945 0.92981 0.92505 1.19017 0.94172 0.94579 0.92824 1.21683 1.34141 1.08474 0.92061 0.92073 1.25931 0.95353 0.96072 1.02610 1.70102 1.40478 1.23015 1.24134 0.85488 0.78023 0.78961 0.79135 1.18496 1.20626 1.20718 1.21828 0.99578 0.94179 0.89423 1.60252 1.20267 1.49277 0.99547 1.21872 1.01607 0.94392 0.88398 1.23252 1.03350 0.89711 0.89096 0.83749 1.62301 1.04603 1.03601 1.51392 1.23257 0.88283 0.99594 1.01222 1.22702 0.96978 0.87337 0.94087 1.87948 1.19471 1.64399 1.60451 1.22778 0.80486 0.95424 1.02662 1.23343 1.00623 0.93722 0.95607 1.22322 0.76610 0.76932 0.87803 1.93151 1.32145 1.95543 1.95711 1.93192 1.84163 1.43568 1.95850 1.93106 1.93583 1.71624 1.58044 0.93908 0.91162 0.94136 0.99232 0.99631 0.93030 0.95770 0.92625 0.83246 0.92972 0.90645 0.89074 0.93186 0.92427 0.87224 0.86518 0.92259 0.92164 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 8.77 71.98 0.63 -3.65 16 2 C -0.07 -2.80 2.54 -10.79 -0.03 -2.83 16 3 H 0.06 2.32 8.14 -2.38 -0.02 2.31 16 4 C 0.03 1.63 4.45 29.84 0.13 1.76 16 5 C -0.53 -29.34 8.41 25.60 0.22 -29.13 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -57.00 13.29 21.45 0.28 -56.72 16 9 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.08 2.50 5.14 86.30 0.44 2.95 16 14 N -0.66 -15.98 6.24 -513.87 -3.21 -19.18 16 15 C 0.07 1.35 4.82 86.30 0.42 1.77 16 16 C 0.06 0.96 2.19 44.92 0.10 1.06 16 17 H 0.14 1.77 7.91 -2.39 -0.02 1.75 16 18 N -0.50 -8.97 4.37 -870.01 -3.80 -12.77 16 19 C 0.00 0.08 4.07 86.31 0.35 0.43 16 20 C 0.07 1.27 7.01 72.01 0.50 1.78 16 21 O -0.40 -8.47 10.82 -148.98 -1.61 -10.08 16 22 C 0.06 1.01 7.01 72.02 0.50 1.51 16 23 C -0.01 -0.09 5.29 86.32 0.46 0.37 16 24 C 0.42 7.65 2.36 71.98 0.17 7.82 16 25 F -0.18 -3.76 13.09 44.97 0.59 -3.17 16 26 F -0.19 -3.57 17.11 44.97 0.77 -2.80 16 27 F -0.18 -3.39 13.80 44.97 0.62 -2.77 16 28 H 0.04 1.62 6.95 -2.39 -0.02 1.60 16 29 H 0.07 1.85 6.68 -2.39 -0.02 1.84 16 30 H 0.04 1.36 8.14 -2.38 -0.02 1.35 16 31 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 32 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.35 7.47 6.98 -89.70 -0.63 6.84 16 37 H 0.05 0.99 8.07 -2.38 -0.02 0.97 16 38 H 0.08 1.66 6.33 -2.39 -0.02 1.64 16 39 H 0.09 1.89 6.56 -2.39 -0.02 1.87 16 40 H 0.05 1.02 5.43 -2.39 -0.01 1.01 16 41 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 0.98 5.42 -2.39 -0.01 0.97 16 46 H 0.11 1.22 8.03 -2.38 -0.02 1.20 16 Total: -1.00 -64.97 362.25 0.39 -64.57 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.36 Total: 12.51 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.36 Total: -15.85 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -6.72 Total: -88.67 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.61 Total: -10.08 kcal Atomic # 9 Polarization: -10.72 SS G_CDS: 1.98 Total: -8.74 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -64.97 0.39 -64.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602652252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.739 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds