Wall clock time and date at job start Tue Mar 31 2020 15:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46908 * 2 1 4 4 C 1.35849 * 126.05107 * 125.00030 * 3 2 1 5 5 C 1.35743 * 107.55622 * 180.02562 * 4 3 2 6 6 N 1.40800 * 126.07302 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99699 * 145.36214 * 6 5 4 8 8 S 1.71195 * 120.00178 * 354.68184 * 7 6 5 9 9 N 1.34780 * 119.99552 * 174.40577 * 7 6 5 10 10 C 1.46502 * 119.99850 * 180.27440 * 9 7 6 11 11 C 1.50700 * 109.47072 * 90.00062 * 10 9 7 12 12 H 1.08001 * 120.00358 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00186 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00091 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00256 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47225 * 59.99538 * 15 13 11 17 17 H 1.48498 * 109.47448 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47005 * 299.99621 * 15 13 11 19 19 C 1.46499 * 120.00302 * 0.27403 * 9 7 6 20 20 C 1.53000 * 109.46869 * 90.00310 * 19 9 7 21 21 C 1.52991 * 109.47486 * 59.99875 * 20 19 9 22 22 C 1.53006 * 109.47029 * 180.02562 * 20 19 9 23 23 C 1.53001 * 109.46770 * 299.99768 * 20 19 9 24 24 C 1.40243 * 107.84716 * 0.24174 * 5 4 3 25 25 N 1.30838 * 108.34067 * 359.59189 * 24 5 4 26 26 H 1.09009 * 109.46823 * 59.99516 * 1 2 3 27 27 H 1.09001 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46977 * 299.99784 * 1 2 3 29 29 H 1.09000 * 109.46762 * 240.00524 * 2 1 3 30 30 H 1.08996 * 109.46513 * 120.00431 * 2 1 3 31 31 H 1.07998 * 126.22221 * 0.04009 * 4 3 2 32 32 H 0.96999 * 120.00602 * 325.36031 * 6 5 4 33 33 H 1.08999 * 109.47468 * 210.00064 * 10 9 7 34 34 H 1.08994 * 109.47305 * 330.00397 * 10 9 7 35 35 H 0.97003 * 120.00556 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47402 * 209.99760 * 19 9 7 37 37 H 1.08998 * 109.47235 * 329.99929 * 19 9 7 38 38 H 1.09001 * 109.47147 * 60.00328 * 21 20 19 39 39 H 1.09004 * 109.47190 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47392 * 299.99904 * 21 20 19 41 41 H 1.09005 * 109.47076 * 59.99840 * 22 20 19 42 42 H 1.08991 * 109.47103 * 179.97438 * 22 20 19 43 43 H 1.08995 * 109.46902 * 300.00268 * 22 20 19 44 44 H 1.09001 * 109.47153 * 60.00680 * 23 20 19 45 45 H 1.09004 * 109.46756 * 180.02562 * 23 20 19 46 46 H 1.09005 * 109.47449 * 300.00230 * 23 20 19 47 47 H 1.07997 * 125.82530 * 179.72427 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8788 1.9250 0.8997 5 6 3.0745 3.2212 0.5473 6 7 3.8978 4.1470 1.2164 7 6 4.5666 5.0838 0.5152 8 16 4.5244 5.0647 -1.1961 9 7 5.2642 6.0390 1.1615 10 6 5.9863 7.0608 0.3994 11 6 5.0804 8.2406 0.1573 12 1 4.0679 8.2301 0.5331 13 6 5.5438 9.3329 -0.5448 14 7 6.7765 9.3456 -1.0028 15 14 4.4212 10.7956 -0.8443 16 1 3.9895 11.3632 0.4583 17 1 5.1530 11.8314 -1.6168 18 1 3.2287 10.3554 -1.6120 19 6 5.3003 6.0554 2.6259 20 6 6.4840 5.2191 3.1162 21 6 7.7857 5.8065 2.5673 22 6 6.5214 5.2357 4.6457 23 6 6.3281 3.7782 2.6260 24 6 2.3063 3.4760 -0.5980 25 7 1.6804 2.3752 -0.9271 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.3260 1.4182 1.7420 32 1 3.9836 4.1107 2.1819 33 1 6.8611 7.3842 0.9635 34 1 6.3038 6.6445 -0.5565 35 1 7.1027 10.1142 -1.4965 36 1 5.4114 7.0819 2.9752 37 1 4.3730 5.6369 3.0170 38 1 7.8967 6.8331 2.9166 39 1 8.6290 5.2109 2.9170 40 1 7.7588 5.7943 1.4777 41 1 5.5940 4.8169 5.0364 42 1 7.3644 4.6396 4.9950 43 1 6.6321 6.2621 4.9953 44 1 6.3013 3.7659 1.5364 45 1 7.1712 3.1822 2.9757 46 1 5.4007 3.3596 3.0170 47 1 2.2438 4.4192 -1.1203 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729646375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:56 Heat of formation + Delta-G solvation = 81.732968 kcal Electronic energy + Delta-G solvation = -26317.885559 eV Core-core repulsion = 22856.362227 eV Total energy + Delta-G solvation = -3461.523332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.25892 -40.98062 -37.60020 -36.33984 -34.99649 -34.28538 -31.25359 -30.19611 -29.16414 -28.19182 -28.13691 -27.78155 -25.25515 -24.76600 -23.00427 -22.09518 -21.35490 -19.86391 -19.10589 -18.72570 -18.61497 -17.37387 -16.62686 -16.40109 -16.27193 -16.06410 -15.73295 -15.34594 -15.04228 -14.69063 -14.54599 -14.40187 -14.22498 -13.83049 -13.51225 -13.26830 -13.24721 -13.02251 -12.90502 -12.77630 -12.65194 -12.61040 -12.54583 -12.30826 -12.18019 -12.10664 -12.00359 -11.72193 -11.65226 -11.60132 -11.45172 -10.55737 -10.44178 -10.29681 -8.94141 -8.62347 -8.15477 -8.02071 -6.25811 0.42488 1.00739 1.12247 1.38093 1.44123 1.49302 1.53106 1.91596 2.03588 2.42235 2.54515 3.17380 3.66187 3.69691 3.73145 3.90921 3.98514 4.16525 4.21661 4.26146 4.43922 4.45458 4.50511 4.62049 4.62772 4.72481 4.80552 4.85780 4.87427 4.95390 5.00458 5.01186 5.04828 5.12837 5.20472 5.27105 5.31285 5.35218 5.40045 5.49754 5.60378 5.74332 5.83319 6.04610 6.10199 6.21207 6.53599 6.78777 6.79525 7.39889 8.91551 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.011659 B = 0.004363 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.047495 B = 6416.469061 C = 8161.611688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 N -0.371 5.371 4 C 0.068 3.932 5 C -0.030 4.030 6 N -0.592 5.592 7 C 0.587 3.413 8 S -0.751 6.751 9 N -0.530 5.530 10 C 0.259 3.741 11 C -0.526 4.526 12 H 0.048 0.952 13 C 0.018 3.982 14 N -0.923 5.923 15 Si 0.956 3.044 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.285 1.285 19 C 0.091 3.909 20 C -0.078 4.078 21 C -0.144 4.144 22 C -0.131 4.131 23 C -0.144 4.144 24 C 0.076 3.924 25 N -0.323 5.323 26 H 0.043 0.957 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.226 0.774 32 H 0.418 0.582 33 H 0.043 0.957 34 H 0.032 0.968 35 H 0.265 0.735 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.025 0.975 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 -19.433 17.417 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 N -0.155 5.155 4 C -0.082 4.082 5 C -0.134 4.134 6 N -0.223 5.223 7 C 0.224 3.776 8 S -0.622 6.622 9 N -0.232 5.232 10 C 0.139 3.861 11 C -0.565 4.565 12 H 0.066 0.934 13 C -0.181 4.181 14 N -0.562 5.562 15 Si 0.782 3.218 16 H -0.185 1.185 17 H -0.206 1.206 18 H -0.211 1.211 19 C -0.033 4.033 20 C -0.079 4.079 21 C -0.201 4.201 22 C -0.188 4.188 23 C -0.202 4.202 24 C -0.113 4.113 25 N -0.145 5.145 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.155 0.845 31 H 0.242 0.758 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.710 -19.953 15.466 26.122 hybrid contribution 0.417 1.870 0.577 2.001 sum -6.293 -18.084 16.043 24.980 Atomic orbital electron populations 1.22030 0.93743 1.03941 1.02124 1.22082 0.96122 0.75211 1.05845 1.48928 1.35941 1.10957 1.19652 1.22619 0.96414 0.91064 0.98091 1.17487 1.03472 0.90736 1.01735 1.41562 1.43022 1.28516 1.09220 1.21403 0.81002 0.82098 0.93068 1.93316 1.83709 1.89321 0.95809 1.47523 1.44219 1.23841 1.07619 1.19412 0.91088 0.83661 0.91961 1.21376 0.98487 1.01036 1.35586 0.93417 1.25583 0.96405 1.01155 0.94980 1.70016 1.16940 1.31552 1.37742 0.85639 0.78671 0.78846 0.78659 1.18526 1.20641 1.21054 1.22343 0.99916 1.03412 0.77653 1.20992 0.93906 0.95094 0.97945 1.21952 0.97333 1.00851 0.99959 1.21773 1.03585 1.02827 0.90664 1.22051 1.03311 0.95121 0.99674 1.24071 0.93186 0.97960 0.96046 1.77333 1.25014 0.97132 1.15062 0.93786 0.88049 0.92465 0.89580 0.84538 0.75793 0.73778 0.93891 0.95014 0.92650 0.88905 0.88480 0.92922 0.91121 0.95202 0.90377 0.90912 0.92273 0.95623 0.90492 0.90427 0.81681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 10.10 71.98 0.73 -1.25 16 2 C 0.13 1.57 7.24 86.38 0.63 2.19 16 3 N -0.37 -8.39 3.70 -346.96 -1.29 -9.67 16 4 C 0.07 1.37 11.52 83.49 0.96 2.33 16 5 C -0.03 -0.88 6.37 37.61 0.24 -0.64 16 6 N -0.59 -17.17 4.30 -190.52 -0.82 -17.99 16 7 C 0.59 23.57 6.01 179.05 1.08 24.65 16 8 S -0.75 -39.48 24.48 -56.49 -1.38 -40.86 16 9 N -0.53 -20.73 1.98 -714.18 -1.41 -22.14 16 10 C 0.26 13.21 3.83 85.63 0.33 13.54 16 11 C -0.53 -29.52 9.39 25.60 0.24 -29.28 16 12 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 13 C 0.02 1.05 5.46 84.65 0.46 1.51 16 14 N -0.92 -55.60 13.29 21.45 0.28 -55.32 16 15 Si 0.96 45.79 29.54 68.60 2.03 47.81 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 19 C 0.09 2.48 4.52 86.38 0.39 2.87 16 20 C -0.08 -1.67 0.84 -52.18 -0.04 -1.71 16 21 C -0.14 -3.95 7.22 71.98 0.52 -3.43 16 22 C -0.13 -1.82 8.47 71.98 0.61 -1.21 16 23 C -0.14 -2.82 7.00 71.98 0.50 -2.32 16 24 C 0.08 2.81 10.00 85.33 0.85 3.67 16 25 N -0.32 -10.74 12.41 -56.78 -0.70 -11.45 16 26 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.14 0.53 8.07 -2.39 -0.02 0.51 16 31 H 0.23 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.42 8.59 4.51 -92.71 -0.42 8.17 16 33 H 0.04 2.20 6.05 -2.39 -0.01 2.19 16 34 H 0.03 1.93 6.58 -2.39 -0.02 1.91 16 35 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.09 2.70 8.07 -2.39 -0.02 2.68 16 37 H 0.10 1.99 6.44 -2.39 -0.02 1.98 16 38 H 0.05 1.50 8.08 -2.39 -0.02 1.48 16 39 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.03 1.06 5.99 -2.39 -0.01 1.04 16 41 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.02 0.71 6.14 -2.39 -0.01 0.69 16 45 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.08 1.03 6.56 -2.38 -0.02 1.01 16 47 H 0.17 7.35 6.41 -3.35 -0.02 7.33 16 Total: -1.00 -83.62 379.35 4.74 -78.88 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.54 Total: 19.83 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 7.49 Total: 10.91 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -3.94 Total: -116.57 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: -39.48 SS G_CDS: -1.38 Total: -40.86 kcal Total: -83.62 4.74 -78.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729646375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.614 kcal (2) G-P(sol) polarization free energy of solvation -83.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds