Wall clock time and date at job start Tue Mar 31 2020 14:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.53005 * 109.46902 * 240.00026 * 2 1 3 5 5 C 1.53000 * 109.46867 * 175.00512 * 4 2 1 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 2 7 7 O 1.42903 * 109.46726 * 294.99609 * 5 4 2 8 8 C 1.50699 * 109.47083 * 174.99799 * 5 4 2 9 9 C 1.34512 * 125.79354 * 264.71215 * 8 5 4 10 10 C 1.41379 * 106.84522 * 179.88705 * 9 8 5 11 11 C 1.34521 * 106.83797 * 0.37794 * 10 9 8 12 12 O 1.34303 * 125.78791 * 85.02347 * 8 5 4 13 13 N 1.46501 * 109.46720 * 120.00215 * 2 1 3 14 14 C 1.34771 * 119.99776 * 274.99532 * 13 2 1 15 15 O 1.21590 * 120.00285 * 0.02562 * 14 13 2 16 16 N 1.34781 * 120.00131 * 180.02562 * 14 13 2 17 17 C 1.46497 * 120.00392 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47502 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47013 * 300.00265 * 18 17 16 20 20 C 1.53003 * 109.47016 * 59.99957 * 18 17 16 21 21 C 1.50696 * 109.47283 * 180.02562 * 18 17 16 22 22 H 1.08002 * 120.00317 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00020 * 180.02562 * 21 18 17 24 24 N 1.31513 * 119.99882 * 359.97438 * 23 21 18 25 25 Si 1.86797 * 120.00200 * 180.02562 * 23 21 18 26 26 H 1.48505 * 109.47315 * 89.99420 * 25 23 21 27 27 H 1.48499 * 109.47563 * 209.99628 * 25 23 21 28 28 H 1.48500 * 109.47144 * 329.99701 * 25 23 21 29 29 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46912 * 300.00206 * 1 2 3 31 31 H 1.09005 * 109.46911 * 59.99817 * 1 2 3 32 32 H 1.08990 * 109.47398 * 55.00440 * 4 2 1 33 33 H 1.09001 * 109.47099 * 295.00133 * 4 2 1 34 34 H 0.96700 * 114.00234 * 300.00043 * 7 5 4 35 35 H 1.08008 * 126.57528 * 0.02776 * 9 8 5 36 36 H 1.07997 * 126.58001 * 180.12000 * 10 9 8 37 37 H 1.07997 * 125.78424 * 179.75082 * 11 10 9 38 38 H 0.97003 * 120.00154 * 95.00403 * 13 2 1 39 39 H 0.97003 * 119.99799 * 0.02562 * 16 14 13 40 40 H 1.09001 * 109.46953 * 300.00160 * 17 16 14 41 41 H 1.09005 * 109.46820 * 59.99614 * 17 16 14 42 42 H 1.09004 * 109.47662 * 59.99800 * 19 18 17 43 43 H 1.09000 * 109.47350 * 179.97438 * 19 18 17 44 44 H 1.09003 * 109.46843 * 299.99576 * 19 18 17 45 45 H 1.09001 * 109.47150 * 60.00086 * 20 18 17 46 46 H 1.09000 * 109.47006 * 180.02562 * 20 18 17 47 47 H 1.09001 * 109.47315 * 300.00199 * 20 18 17 48 48 H 0.97002 * 119.99947 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 8 3.9385 0.7548 -1.4881 8 6 4.0773 -1.4260 -2.4747 9 6 4.5278 -2.6919 -2.4110 10 6 4.9031 -3.0597 -3.7235 11 6 4.6674 -1.9937 -4.5094 12 8 4.1672 -1.0072 -3.7476 13 7 2.0183 -0.6907 1.1962 14 6 2.1470 -0.0183 2.3571 15 8 1.8575 1.1613 2.4118 16 7 2.5967 -0.6536 3.4575 17 6 2.7361 0.0771 4.7196 18 6 3.2617 -0.8688 5.8012 19 6 2.2788 -2.0263 5.9879 20 6 4.6246 -1.4203 5.3779 21 6 3.4045 -0.1173 7.0995 22 1 3.1466 0.9304 7.1484 23 6 3.8654 -0.7669 8.2250 24 7 4.1799 -2.0425 8.1654 25 14 4.0417 0.1644 9.8346 26 1 2.7741 0.0702 10.6025 27 1 5.1475 -0.4270 10.6302 28 1 4.3438 1.5904 9.5509 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6055 -0.2618 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.5896 1.1581 -2.2947 35 1 4.5887 -3.3096 -1.5271 36 1 5.3060 -4.0122 -4.0346 37 1 4.8497 -1.9403 -5.5725 38 1 2.2490 -1.6319 1.1526 39 1 2.8280 -1.5946 3.4138 40 1 3.4367 0.9015 4.5866 41 1 1.7652 0.4705 5.0208 42 1 2.1750 -2.5700 5.0488 43 1 2.6534 -2.7004 6.7581 44 1 1.3078 -1.6333 6.2894 45 1 5.3249 -0.5957 5.2449 46 1 4.9989 -2.0945 6.1483 47 1 4.5209 -1.9640 4.4389 48 1 4.5038 -2.4996 8.9573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838753536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:44 Heat of formation + Delta-G solvation = -77.502709 kcal Electronic energy + Delta-G solvation = -27909.739042 eV Core-core repulsion = 23966.265111 eV Total energy + Delta-G solvation = -3943.473931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.91368 -39.79651 -38.09132 -36.51472 -35.26375 -33.40154 -33.23868 -31.80615 -30.98679 -30.06640 -28.12081 -25.68923 -25.54987 -24.82236 -24.06605 -22.10431 -21.47280 -20.83023 -20.42017 -18.73847 -18.42053 -18.06213 -16.68319 -16.23671 -16.07763 -15.73764 -15.46170 -15.28258 -14.76180 -14.67747 -14.16767 -13.85162 -13.49050 -13.20286 -13.16084 -13.03642 -12.89854 -12.83550 -12.38146 -12.17240 -12.12478 -11.98058 -11.83981 -11.35797 -11.16494 -11.02656 -10.82941 -10.66192 -10.55586 -10.34760 -10.23705 -10.17759 -9.70010 -9.59238 -9.26751 -8.99699 -8.76533 -8.75528 -8.38375 -8.14403 -5.99318 -4.08910 1.36914 2.28551 2.58282 3.11699 3.30595 3.37479 3.42292 3.71062 4.06285 4.10510 4.41311 4.51064 4.62307 4.71775 4.76032 4.79141 4.91692 5.21527 5.27569 5.34460 5.43409 5.47065 5.53094 5.63611 5.64963 5.75509 6.00205 6.14932 6.19909 6.26985 6.41576 6.54651 6.72605 6.75181 6.84742 6.86075 6.94999 7.07222 7.15305 7.27856 7.34705 7.46274 7.59463 7.73012 8.04719 8.16069 8.41948 8.54416 8.91199 9.11866 9.56715 11.02141 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019159 B = 0.002453 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.132633 B =11411.330799 C =12138.573091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.165 3.835 3 H 0.097 0.903 4 C -0.157 4.157 5 C 0.194 3.806 6 H 0.128 0.872 7 O -0.543 6.543 8 C -0.044 4.044 9 C -0.202 4.202 10 C -0.212 4.212 11 C -0.043 4.043 12 O -0.174 6.174 13 N -0.751 5.751 14 C 0.699 3.301 15 O -0.596 6.596 16 N -0.734 5.734 17 C 0.151 3.849 18 C 0.056 3.944 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.504 4.504 22 H 0.058 0.942 23 C 0.065 3.935 24 N -0.887 5.887 25 Si 0.893 3.107 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.379 0.621 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.203 0.797 38 H 0.390 0.610 39 H 0.392 0.608 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.005 0.995 43 H 0.084 0.916 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.084 0.916 47 H 0.005 0.995 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 -3.894 -24.694 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.060 3.940 3 H 0.115 0.885 4 C -0.195 4.195 5 C 0.134 3.866 6 H 0.146 0.854 7 O -0.348 6.348 8 C -0.095 4.095 9 C -0.222 4.222 10 C -0.232 4.232 11 C -0.110 4.110 12 O -0.070 6.070 13 N -0.408 5.408 14 C 0.399 3.601 15 O -0.475 6.475 16 N -0.388 5.388 17 C 0.028 3.972 18 C 0.055 3.945 19 C -0.187 4.187 20 C -0.187 4.187 21 C -0.543 4.543 22 H 0.076 0.924 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.721 3.279 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.199 1.199 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.226 0.774 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.219 0.781 38 H 0.223 0.777 39 H 0.227 0.773 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.024 0.976 43 H 0.103 0.897 44 H 0.045 0.955 45 H 0.046 0.954 46 H 0.103 0.897 47 H 0.024 0.976 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.325 -2.730 -24.009 24.275 hybrid contribution 0.155 -0.844 0.213 0.884 sum -2.170 -3.574 -23.796 24.161 Atomic orbital electron populations 1.22205 0.95472 1.01922 1.02623 1.20640 0.93529 0.97814 0.82038 0.88476 1.22677 0.94824 1.02806 0.99198 1.20568 0.93562 0.80540 0.91918 0.85442 1.86696 1.77072 1.23582 1.47423 1.23503 1.05427 0.96098 0.84440 1.21655 1.05559 0.95972 0.98981 1.21871 1.07146 1.00758 0.93388 1.24069 1.02845 0.86777 0.97309 1.83966 1.64926 1.40112 1.17981 1.45237 1.73022 1.13222 1.09282 1.16054 0.78558 0.85166 0.80321 1.90882 1.57512 1.14485 1.84635 1.45508 1.69584 1.13959 1.09776 1.21562 0.99965 0.94953 0.80741 1.18355 0.92123 0.92127 0.91858 1.21818 0.98193 0.99778 0.98934 1.21816 0.98676 1.00101 0.98128 1.20996 1.43641 0.96298 0.93316 0.92414 1.24878 0.95047 0.94896 0.98737 1.69807 1.44838 1.08931 1.28993 0.86574 0.77641 0.80153 0.83520 1.20747 1.21310 1.19889 0.92716 0.91506 0.92053 0.89578 0.89871 0.77366 0.83180 0.83335 0.78061 0.77678 0.77327 0.92983 0.93042 0.97579 0.89696 0.95486 0.95439 0.89695 0.97580 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 2 C 0.17 1.79 2.53 -67.93 -0.17 1.62 16 3 H 0.10 1.31 7.13 -51.93 -0.37 0.94 16 4 C -0.16 -1.21 4.41 -26.73 -0.12 -1.33 16 5 C 0.19 1.79 3.37 -27.88 -0.09 1.70 16 6 H 0.13 1.27 7.62 -51.93 -0.40 0.88 16 7 O -0.54 -5.84 12.77 -40.03 -0.51 -6.35 16 8 C -0.04 -0.42 6.20 -35.63 -0.22 -0.64 16 9 C -0.20 -1.84 10.81 -39.70 -0.43 -2.26 16 10 C -0.21 -1.71 10.91 -39.70 -0.43 -2.14 16 11 C -0.04 -0.32 12.09 29.42 0.36 0.04 16 12 O -0.17 -1.62 10.52 0.91 0.01 -1.61 16 13 N -0.75 -9.33 4.45 -58.67 -0.26 -9.59 16 14 C 0.70 12.31 8.53 -86.92 -0.74 11.57 16 15 O -0.60 -12.95 16.01 5.29 0.08 -12.87 16 16 N -0.73 -13.17 4.96 -65.23 -0.32 -13.49 16 17 C 0.15 3.27 4.50 -4.05 -0.02 3.25 16 18 C 0.06 1.31 0.50 -155.67 -0.08 1.23 16 19 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 20 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 21 C -0.50 -13.31 8.01 -34.44 -0.28 -13.58 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 23 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 24 N -0.89 -23.74 9.35 55.43 0.52 -23.22 16 25 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.38 2.75 8.93 45.56 0.41 3.15 16 35 H 0.15 1.15 8.06 -52.48 -0.42 0.72 16 36 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.20 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.39 3.77 8.62 -40.82 -0.35 3.42 16 39 H 0.39 6.26 6.18 -40.82 -0.25 6.01 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 43 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 47 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 48 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -32.12 389.42 -7.92 -40.04 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.92 Total: 10.83 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.36 Total: -5.49 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.07 Total: -46.30 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.42 Total: -20.83 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.12 -7.92 -40.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838753536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.461 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds