Wall clock time and date at job start Tue Mar 31 2020 14:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.53005 * 109.46902 * 240.00026 * 2 1 3 5 5 C 1.53000 * 109.46867 * 175.00512 * 4 2 1 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 2 7 7 O 1.42903 * 109.46726 * 294.99609 * 5 4 2 8 8 C 1.50699 * 109.47083 * 174.99799 * 5 4 2 9 9 C 1.34512 * 125.79354 * 264.71215 * 8 5 4 10 10 C 1.41379 * 106.84522 * 179.88705 * 9 8 5 11 11 C 1.34521 * 106.83797 * 0.37794 * 10 9 8 12 12 O 1.34303 * 125.78791 * 85.02347 * 8 5 4 13 13 N 1.46501 * 109.46720 * 120.00215 * 2 1 3 14 14 C 1.34771 * 119.99776 * 274.99532 * 13 2 1 15 15 O 1.21590 * 120.00285 * 0.02562 * 14 13 2 16 16 N 1.34781 * 120.00131 * 180.02562 * 14 13 2 17 17 C 1.46497 * 120.00392 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47502 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47013 * 300.00265 * 18 17 16 20 20 C 1.53003 * 109.47016 * 59.99957 * 18 17 16 21 21 C 1.50696 * 109.47283 * 180.02562 * 18 17 16 22 22 H 1.08002 * 120.00317 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00020 * 180.02562 * 21 18 17 24 24 N 1.31513 * 119.99882 * 359.97438 * 23 21 18 25 25 Si 1.86797 * 120.00200 * 180.02562 * 23 21 18 26 26 H 1.48505 * 109.47315 * 89.99420 * 25 23 21 27 27 H 1.48499 * 109.47563 * 209.99628 * 25 23 21 28 28 H 1.48500 * 109.47144 * 329.99701 * 25 23 21 29 29 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46912 * 300.00206 * 1 2 3 31 31 H 1.09005 * 109.46911 * 59.99817 * 1 2 3 32 32 H 1.08990 * 109.47398 * 55.00440 * 4 2 1 33 33 H 1.09001 * 109.47099 * 295.00133 * 4 2 1 34 34 H 0.96700 * 114.00234 * 300.00043 * 7 5 4 35 35 H 1.08008 * 126.57528 * 0.02776 * 9 8 5 36 36 H 1.07997 * 126.58001 * 180.12000 * 10 9 8 37 37 H 1.07997 * 125.78424 * 179.75082 * 11 10 9 38 38 H 0.97003 * 120.00154 * 95.00403 * 13 2 1 39 39 H 0.97003 * 119.99799 * 0.02562 * 16 14 13 40 40 H 1.09001 * 109.46953 * 300.00160 * 17 16 14 41 41 H 1.09005 * 109.46820 * 59.99614 * 17 16 14 42 42 H 1.09004 * 109.47662 * 59.99800 * 19 18 17 43 43 H 1.09000 * 109.47350 * 179.97438 * 19 18 17 44 44 H 1.09003 * 109.46843 * 299.99576 * 19 18 17 45 45 H 1.09001 * 109.47150 * 60.00086 * 20 18 17 46 46 H 1.09000 * 109.47006 * 180.02562 * 20 18 17 47 47 H 1.09001 * 109.47315 * 300.00199 * 20 18 17 48 48 H 0.97002 * 119.99947 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 8 3.9385 0.7548 -1.4881 8 6 4.0773 -1.4260 -2.4747 9 6 4.5278 -2.6919 -2.4110 10 6 4.9031 -3.0597 -3.7235 11 6 4.6674 -1.9937 -4.5094 12 8 4.1672 -1.0072 -3.7476 13 7 2.0183 -0.6907 1.1962 14 6 2.1470 -0.0183 2.3571 15 8 1.8575 1.1613 2.4118 16 7 2.5967 -0.6536 3.4575 17 6 2.7361 0.0771 4.7196 18 6 3.2617 -0.8688 5.8012 19 6 2.2788 -2.0263 5.9879 20 6 4.6246 -1.4203 5.3779 21 6 3.4045 -0.1173 7.0995 22 1 3.1466 0.9304 7.1484 23 6 3.8654 -0.7669 8.2250 24 7 4.1799 -2.0425 8.1654 25 14 4.0417 0.1644 9.8346 26 1 2.7741 0.0702 10.6025 27 1 5.1475 -0.4270 10.6302 28 1 4.3438 1.5904 9.5509 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6055 -0.2618 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.5896 1.1581 -2.2947 35 1 4.5887 -3.3096 -1.5271 36 1 5.3060 -4.0122 -4.0346 37 1 4.8497 -1.9403 -5.5725 38 1 2.2490 -1.6319 1.1526 39 1 2.8280 -1.5946 3.4138 40 1 3.4367 0.9015 4.5866 41 1 1.7652 0.4705 5.0208 42 1 2.1750 -2.5700 5.0488 43 1 2.6534 -2.7004 6.7581 44 1 1.3078 -1.6333 6.2894 45 1 5.3249 -0.5957 5.2449 46 1 4.9989 -2.0945 6.1483 47 1 4.5209 -1.9640 4.4389 48 1 4.5038 -2.4996 8.9573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838753536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:42 Heat of formation + Delta-G solvation = -100.012150 kcal Electronic energy + Delta-G solvation = -27910.715124 eV Core-core repulsion = 23966.265111 eV Total energy + Delta-G solvation = -3944.450013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.52088 -41.12609 -39.05962 -38.11339 -36.39490 -34.96333 -34.02701 -33.11901 -32.19142 -31.19792 -28.80588 -27.53815 -27.42366 -26.58668 -24.84735 -22.75602 -22.55740 -21.61492 -21.45167 -20.54649 -19.62934 -18.93535 -17.76686 -17.48247 -17.05406 -16.83922 -16.65466 -16.45720 -16.20301 -15.77877 -15.50271 -15.26302 -14.70258 -14.60529 -14.33007 -14.04561 -13.95341 -13.75467 -13.47914 -13.44278 -13.15067 -13.07884 -12.86799 -12.79168 -12.66921 -12.59175 -12.56277 -12.22892 -12.12421 -11.84486 -11.45909 -11.31757 -11.29058 -11.08840 -10.85230 -10.68440 -10.38825 -10.24555 -9.64192 -9.38816 -8.01033 -6.16270 0.76067 1.43178 1.45892 1.54291 1.69067 1.86708 2.00251 2.29134 2.47467 3.22576 3.37698 3.44885 3.50680 3.81732 4.05059 4.06249 4.15929 4.30508 4.44319 4.45389 4.50163 4.56786 4.73679 4.75792 4.83891 4.88540 4.93382 5.01470 5.03831 5.08466 5.11061 5.17493 5.18159 5.22763 5.33925 5.41987 5.58596 5.66018 5.68745 5.69094 5.69674 6.14413 6.15046 6.17765 6.24414 6.45911 6.68305 6.88008 7.23947 7.51302 7.72628 8.97935 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019159 B = 0.002453 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.132633 B =11411.330799 C =12138.573091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 H 0.068 0.932 4 C -0.140 4.140 5 C 0.195 3.805 6 H 0.117 0.883 7 O -0.567 6.567 8 C -0.059 4.059 9 C -0.214 4.214 10 C -0.230 4.230 11 C -0.040 4.040 12 O -0.185 6.185 13 N -0.729 5.729 14 C 0.697 3.303 15 O -0.640 6.640 16 N -0.727 5.727 17 C 0.169 3.831 18 C 0.053 3.947 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.528 4.528 22 H 0.043 0.957 23 C 0.028 3.972 24 N -0.899 5.899 25 Si 0.944 3.056 26 H -0.279 1.279 27 H -0.282 1.282 28 H -0.277 1.277 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.391 0.609 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.237 0.763 38 H 0.408 0.592 39 H 0.405 0.595 40 H 0.031 0.969 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.015 0.985 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 -5.340 -26.822 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.059 3.941 3 H 0.087 0.913 4 C -0.178 4.178 5 C 0.136 3.864 6 H 0.135 0.865 7 O -0.374 6.374 8 C -0.109 4.109 9 C -0.233 4.233 10 C -0.248 4.248 11 C -0.107 4.107 12 O -0.082 6.082 13 N -0.387 5.387 14 C 0.397 3.603 15 O -0.522 6.522 16 N -0.383 5.383 17 C 0.044 3.956 18 C 0.052 3.948 19 C -0.177 4.177 20 C -0.177 4.177 21 C -0.567 4.567 22 H 0.061 0.939 23 C -0.171 4.171 24 N -0.538 5.538 25 Si 0.771 3.229 26 H -0.205 1.205 27 H -0.208 1.208 28 H -0.202 1.202 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.241 0.759 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.253 0.747 38 H 0.244 0.756 39 H 0.241 0.759 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.036 0.964 45 H 0.035 0.965 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.557 -4.230 -26.184 26.646 hybrid contribution 0.247 -0.398 0.775 0.906 sum -2.311 -4.628 -25.408 25.930 Atomic orbital electron populations 1.22152 0.94637 1.02829 1.02082 1.20745 0.94106 0.96755 0.82447 0.91338 1.22555 0.93716 1.03620 0.97884 1.20511 0.94349 0.79875 0.91691 0.86548 1.86654 1.77691 1.24569 1.48509 1.23450 1.06583 0.96282 0.84629 1.21953 1.05301 0.96103 0.99944 1.22195 1.07653 1.01877 0.93119 1.24816 1.01277 0.86031 0.98602 1.83961 1.65281 1.40883 1.18077 1.45082 1.71592 1.13927 1.08049 1.16204 0.78151 0.84709 0.81227 1.90857 1.59273 1.16654 1.85448 1.45192 1.69959 1.14258 1.08867 1.21077 0.98242 0.94289 0.81974 1.18345 0.92858 0.92402 0.91204 1.21655 0.97140 0.99080 0.99808 1.21657 0.97740 0.99404 0.98908 1.21279 1.44126 0.96064 0.95193 0.93856 1.25440 0.94940 0.95673 1.01097 1.69905 1.44846 1.09527 1.29517 0.85771 0.77639 0.78919 0.80544 1.20452 1.20779 1.20192 0.91008 0.94869 0.89811 0.87699 0.87912 0.75914 0.82335 0.81649 0.74726 0.75593 0.75875 0.95018 0.94819 0.94352 0.91912 0.96407 0.96529 0.91884 0.94379 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.48 71.98 0.68 -2.30 16 2 C 0.16 3.34 2.53 44.99 0.11 3.45 16 3 H 0.07 1.85 7.13 -2.39 -0.02 1.83 16 4 C -0.14 -1.82 4.41 30.60 0.14 -1.68 16 5 C 0.20 3.34 3.37 29.85 0.10 3.44 16 6 H 0.12 2.19 7.62 -2.39 -0.02 2.17 16 7 O -0.57 -11.88 12.77 -144.39 -1.84 -13.72 16 8 C -0.06 -1.02 6.20 24.83 0.15 -0.86 16 9 C -0.21 -3.48 10.81 22.19 0.24 -3.24 16 10 C -0.23 -3.17 10.91 22.19 0.24 -2.92 16 11 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 12 O -0.19 -3.10 10.52 2.10 0.02 -3.07 16 13 N -0.73 -17.11 4.45 -457.81 -2.04 -19.15 16 14 C 0.70 24.33 8.53 179.06 1.53 25.86 16 15 O -0.64 -28.42 16.01 -4.00 -0.06 -28.48 16 16 N -0.73 -25.55 4.96 -478.54 -2.37 -27.93 16 17 C 0.17 7.42 4.50 86.38 0.39 7.81 16 18 C 0.05 2.46 0.50 -52.93 -0.03 2.44 16 19 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 20 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 21 C -0.53 -28.36 8.01 25.60 0.21 -28.15 16 22 H 0.04 2.39 7.74 -2.91 -0.02 2.36 16 23 C 0.03 1.50 5.15 84.65 0.44 1.93 16 24 N -0.90 -48.19 9.35 21.45 0.20 -47.99 16 25 Si 0.94 43.10 29.54 68.60 2.03 45.13 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.39 5.40 8.93 -74.06 -0.66 4.74 16 35 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.24 0.92 8.06 -2.91 -0.02 0.90 16 38 H 0.41 6.84 8.62 -92.71 -0.80 6.04 16 39 H 0.40 12.06 6.18 -92.71 -0.57 11.48 16 40 H 0.03 1.50 8.14 -2.39 -0.02 1.49 16 41 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 43 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 47 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 48 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -70.87 389.42 1.05 -69.82 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -1.05 Total: 28.80 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 6.17 Total: -3.40 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -4.21 Total: -95.07 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.89 Total: -45.28 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -70.87 1.05 -69.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838753536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.195 kcal (2) G-P(sol) polarization free energy of solvation -70.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds