Wall clock time and date at job start Tue Mar 31 2020 14:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52994 * 109.47404 * 175.00005 * 4 2 1 6 6 H 1.09001 * 109.47698 * 305.00111 * 5 4 2 7 7 O 1.42903 * 109.46969 * 65.00044 * 5 4 2 8 8 C 1.50701 * 109.47248 * 184.99754 * 5 4 2 9 9 C 1.34514 * 125.78503 * 100.00704 * 8 5 4 10 10 C 1.41385 * 106.84013 * 180.02562 * 9 8 5 11 11 C 1.34512 * 106.84104 * 359.97438 * 10 9 8 12 12 O 1.34303 * 108.42116 * 359.74110 * 11 10 9 13 13 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 14 14 C 1.34779 * 119.99793 * 274.99565 * 13 2 1 15 15 O 1.21578 * 120.00118 * 0.02562 * 14 13 2 16 16 N 1.34778 * 119.99594 * 179.97438 * 14 13 2 17 17 C 1.46498 * 119.99664 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47166 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.46995 * 300.00017 * 18 17 16 20 20 C 1.53002 * 109.47323 * 60.00140 * 18 17 16 21 21 C 1.50703 * 109.47533 * 180.02562 * 18 17 16 22 22 H 1.07999 * 119.99618 * 359.97438 * 21 18 17 23 23 C 1.37875 * 120.00422 * 179.97438 * 21 18 17 24 24 N 1.31517 * 119.99510 * 359.97438 * 23 21 18 25 25 Si 1.86796 * 120.00326 * 179.97438 * 23 21 18 26 26 H 1.48509 * 109.46814 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47115 * 119.99662 * 25 23 21 28 28 H 1.48491 * 109.47150 * 240.00153 * 25 23 21 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 33 33 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 34 34 H 0.96704 * 113.99949 * 60.00367 * 7 5 4 35 35 H 1.07998 * 126.58408 * 359.95788 * 9 8 5 36 36 H 1.07998 * 126.58102 * 180.02562 * 10 9 8 37 37 H 1.07998 * 125.79055 * 180.02562 * 11 10 9 38 38 H 0.97004 * 120.00223 * 94.99655 * 13 2 1 39 39 H 0.96995 * 120.00471 * 0.02562 * 16 14 13 40 40 H 1.09004 * 109.47300 * 300.00396 * 17 16 14 41 41 H 1.09000 * 109.47257 * 60.00791 * 17 16 14 42 42 H 1.08997 * 109.47118 * 60.00032 * 19 18 17 43 43 H 1.09000 * 109.47268 * 179.97438 * 19 18 17 44 44 H 1.09003 * 109.47232 * 300.00265 * 19 18 17 45 45 H 1.08992 * 109.46968 * 60.00314 * 20 18 17 46 46 H 1.09000 * 109.47274 * 180.02562 * 20 18 17 47 47 H 1.08997 * 109.46949 * 300.00065 * 20 18 17 48 48 H 0.97001 * 119.99859 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8571 0.4357 -1.2679 7 8 4.1391 -1.3166 -0.2102 8 6 4.0568 -1.2160 -2.6044 9 6 4.4042 -0.5324 -3.7096 10 6 4.8022 -1.4871 -4.6735 11 6 4.6749 -2.6969 -4.0995 12 8 4.2288 -2.5262 -2.8442 13 7 2.0183 -0.6906 1.1962 14 6 2.1471 -0.0182 2.3571 15 8 1.8576 1.1613 2.4118 16 7 2.5958 -0.6538 3.4577 17 6 2.7364 0.0772 4.7195 18 6 3.2606 -0.8690 5.8014 19 6 2.2759 -2.0250 5.9886 20 6 4.6227 -1.4227 5.3785 21 6 3.4045 -0.1173 7.0996 22 1 3.1482 0.9308 7.1480 23 6 3.8635 -0.7673 8.2255 24 7 4.1752 -2.0437 8.1667 25 14 4.0426 0.1646 9.8344 26 1 3.6288 1.5772 9.6369 27 1 3.1813 -0.4629 10.8686 28 1 5.4594 0.1206 10.2769 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1370 34 1 3.9205 -2.2583 -0.1872 35 1 4.3821 0.5398 -3.8367 36 1 5.1438 -1.2839 -5.6777 37 1 4.8982 -3.6445 -4.5670 38 1 2.2490 -1.6318 1.1526 39 1 2.8265 -1.5949 3.4142 40 1 3.4381 0.9006 4.5862 41 1 1.7660 0.4720 5.0207 42 1 2.1714 -2.5689 5.0499 43 1 2.6495 -2.6994 6.7591 44 1 1.3055 -1.6306 6.2900 45 1 5.3241 -0.5992 5.2452 46 1 4.9960 -2.0972 6.1491 47 1 4.5182 -1.9666 4.4397 48 1 4.4977 -2.5012 8.9589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838753539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:55 Heat of formation + Delta-G solvation = -74.752640 kcal Electronic energy + Delta-G solvation = -28071.320047 eV Core-core repulsion = 24127.965368 eV Total energy + Delta-G solvation = -3943.354679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.91643 -39.74549 -38.05824 -36.43032 -35.11896 -33.42059 -33.17721 -31.94280 -30.90663 -29.95633 -28.09356 -25.64771 -25.50973 -24.80055 -24.01851 -22.12974 -21.45609 -20.86615 -20.34213 -18.68668 -18.33892 -17.95844 -16.60070 -16.39704 -16.18532 -15.73673 -15.33350 -15.06969 -14.69307 -14.68153 -14.03128 -13.82992 -13.53027 -13.17448 -13.15897 -12.97704 -12.89952 -12.80206 -12.37524 -12.14669 -12.09472 -11.96382 -11.79677 -11.32554 -11.13916 -11.05095 -10.81679 -10.60874 -10.52750 -10.31074 -10.24994 -10.15169 -9.63001 -9.55272 -9.22592 -8.88103 -8.75171 -8.71141 -8.35672 -8.05573 -5.96870 -4.06277 1.36711 2.27249 2.59345 3.20827 3.30774 3.39238 3.44712 3.80745 4.06669 4.11465 4.43490 4.51373 4.61832 4.71978 4.77089 4.83923 4.95434 5.25413 5.29951 5.33268 5.39823 5.45931 5.53114 5.61755 5.66906 5.73453 5.97440 6.13844 6.20326 6.31494 6.45911 6.59243 6.75354 6.83238 6.89322 6.91258 7.00477 7.11532 7.22366 7.28887 7.42026 7.54332 7.63400 7.75847 8.08389 8.19704 8.45464 8.63881 8.94179 9.21025 9.59189 11.04581 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020901 B = 0.002467 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.328882 B =11345.051137 C =12079.065993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.168 3.832 3 H 0.088 0.912 4 C -0.158 4.158 5 C 0.195 3.805 6 H 0.127 0.873 7 O -0.536 6.536 8 C -0.043 4.043 9 C -0.204 4.204 10 C -0.214 4.214 11 C -0.041 4.041 12 O -0.173 6.173 13 N -0.738 5.738 14 C 0.702 3.298 15 O -0.605 6.605 16 N -0.733 5.733 17 C 0.152 3.848 18 C 0.056 3.944 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.502 4.502 22 H 0.058 0.942 23 C 0.065 3.935 24 N -0.887 5.887 25 Si 0.892 3.108 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.376 0.624 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.203 0.797 38 H 0.390 0.610 39 H 0.392 0.608 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.005 0.995 43 H 0.084 0.916 44 H 0.025 0.975 45 H 0.026 0.974 46 H 0.083 0.917 47 H 0.007 0.993 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -3.457 -25.091 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 H 0.106 0.894 4 C -0.196 4.196 5 C 0.135 3.865 6 H 0.145 0.855 7 O -0.340 6.340 8 C -0.093 4.093 9 C -0.223 4.223 10 C -0.233 4.233 11 C -0.108 4.108 12 O -0.069 6.069 13 N -0.395 5.395 14 C 0.402 3.598 15 O -0.485 6.485 16 N -0.387 5.387 17 C 0.029 3.971 18 C 0.055 3.945 19 C -0.187 4.187 20 C -0.187 4.187 21 C -0.541 4.541 22 H 0.076 0.924 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.721 3.279 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.223 0.777 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.219 0.781 38 H 0.224 0.776 39 H 0.227 0.773 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.103 0.897 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.102 0.898 47 H 0.026 0.974 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.369 -2.125 -24.528 24.734 hybrid contribution 0.227 -0.890 0.248 0.951 sum -2.142 -3.015 -24.280 24.560 Atomic orbital electron populations 1.22215 0.95552 1.01927 1.02592 1.20566 0.93479 0.97211 0.82508 0.89366 1.22697 0.94998 1.02647 0.99275 1.20559 0.91549 0.96220 0.78135 0.85539 1.86756 1.75245 1.25660 1.46378 1.23533 1.05361 0.81146 0.99295 1.21638 1.06268 1.00928 0.93473 1.21857 1.07427 0.92481 1.01581 1.24074 1.03581 1.00443 0.82722 1.83980 1.65748 1.26519 1.30632 1.45072 1.72398 1.13264 1.08747 1.16020 0.78347 0.85064 0.80376 1.90859 1.58102 1.14643 1.84859 1.45447 1.69576 1.13927 1.09709 1.21529 0.99810 0.94920 0.80882 1.18362 0.92159 0.92133 0.91853 1.21813 0.98146 0.99788 0.98939 1.21801 0.98602 1.00077 0.98173 1.21042 1.43498 0.96243 0.93323 0.92400 1.24882 0.95119 0.94889 0.98724 1.69823 1.45010 1.08859 1.28860 0.86527 0.77601 0.80200 0.83623 1.19760 1.21134 1.21111 0.92730 0.91506 0.92084 0.90498 0.89034 0.77663 0.83318 0.83409 0.78075 0.77587 0.77318 0.93126 0.93169 0.97556 0.89722 0.95535 0.95501 0.89784 0.97445 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.31 16 2 C 0.17 1.79 2.57 -67.93 -0.17 1.61 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 4 C -0.16 -1.18 4.51 -26.74 -0.12 -1.30 16 5 C 0.20 1.71 3.43 -27.89 -0.10 1.61 16 6 H 0.13 1.14 8.13 -51.93 -0.42 0.72 16 7 O -0.54 -5.52 11.24 -37.52 -0.42 -5.94 16 8 C -0.04 -0.39 6.18 -35.62 -0.22 -0.61 16 9 C -0.20 -1.77 10.80 -39.70 -0.43 -2.20 16 10 C -0.21 -1.67 10.91 -39.70 -0.43 -2.10 16 11 C -0.04 -0.30 12.09 29.42 0.36 0.05 16 12 O -0.17 -1.60 10.58 3.42 0.04 -1.56 16 13 N -0.74 -9.31 3.87 -58.68 -0.23 -9.54 16 14 C 0.70 12.57 8.53 -86.91 -0.74 11.83 16 15 O -0.60 -13.20 16.01 5.30 0.08 -13.12 16 16 N -0.73 -13.46 4.96 -65.23 -0.32 -13.78 16 17 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 18 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 19 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 20 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 21 C -0.50 -13.39 8.01 -34.44 -0.28 -13.67 16 22 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 23 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 24 N -0.89 -23.93 9.35 55.43 0.52 -23.41 16 25 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.38 2.76 8.72 45.56 0.40 3.15 16 35 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.20 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.39 3.99 7.55 -40.82 -0.31 3.68 16 39 H 0.39 6.50 6.18 -40.82 -0.25 6.25 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 43 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 47 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 48 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -32.21 387.23 -7.83 -40.04 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.94 Total: 10.70 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -1.37 Total: -5.22 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.03 Total: -46.74 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.30 Total: -20.62 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.21 -7.83 -40.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838753539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.718 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds