Wall clock time and date at job start Tue Mar 31 2020 14:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52994 * 109.47404 * 175.00005 * 4 2 1 6 6 H 1.09001 * 109.47698 * 305.00111 * 5 4 2 7 7 O 1.42903 * 109.46969 * 65.00044 * 5 4 2 8 8 C 1.50701 * 109.47248 * 184.99754 * 5 4 2 9 9 C 1.34514 * 125.78503 * 100.00704 * 8 5 4 10 10 C 1.41385 * 106.84013 * 180.02562 * 9 8 5 11 11 C 1.34512 * 106.84104 * 359.97438 * 10 9 8 12 12 O 1.34303 * 108.42116 * 359.74110 * 11 10 9 13 13 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 14 14 C 1.34779 * 119.99793 * 274.99565 * 13 2 1 15 15 O 1.21578 * 120.00118 * 0.02562 * 14 13 2 16 16 N 1.34778 * 119.99594 * 179.97438 * 14 13 2 17 17 C 1.46498 * 119.99664 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47166 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.46995 * 300.00017 * 18 17 16 20 20 C 1.53002 * 109.47323 * 60.00140 * 18 17 16 21 21 C 1.50703 * 109.47533 * 180.02562 * 18 17 16 22 22 H 1.07999 * 119.99618 * 359.97438 * 21 18 17 23 23 C 1.37875 * 120.00422 * 179.97438 * 21 18 17 24 24 N 1.31517 * 119.99510 * 359.97438 * 23 21 18 25 25 Si 1.86796 * 120.00326 * 179.97438 * 23 21 18 26 26 H 1.48509 * 109.46814 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47115 * 119.99662 * 25 23 21 28 28 H 1.48491 * 109.47150 * 240.00153 * 25 23 21 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 33 33 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 34 34 H 0.96704 * 113.99949 * 60.00367 * 7 5 4 35 35 H 1.07998 * 126.58408 * 359.95788 * 9 8 5 36 36 H 1.07998 * 126.58102 * 180.02562 * 10 9 8 37 37 H 1.07998 * 125.79055 * 180.02562 * 11 10 9 38 38 H 0.97004 * 120.00223 * 94.99655 * 13 2 1 39 39 H 0.96995 * 120.00471 * 0.02562 * 16 14 13 40 40 H 1.09004 * 109.47300 * 300.00396 * 17 16 14 41 41 H 1.09000 * 109.47257 * 60.00791 * 17 16 14 42 42 H 1.08997 * 109.47118 * 60.00032 * 19 18 17 43 43 H 1.09000 * 109.47268 * 179.97438 * 19 18 17 44 44 H 1.09003 * 109.47232 * 300.00265 * 19 18 17 45 45 H 1.08992 * 109.46968 * 60.00314 * 20 18 17 46 46 H 1.09000 * 109.47274 * 180.02562 * 20 18 17 47 47 H 1.08997 * 109.46949 * 300.00065 * 20 18 17 48 48 H 0.97001 * 119.99859 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8571 0.4357 -1.2679 7 8 4.1391 -1.3166 -0.2102 8 6 4.0568 -1.2160 -2.6044 9 6 4.4042 -0.5324 -3.7096 10 6 4.8022 -1.4871 -4.6735 11 6 4.6749 -2.6969 -4.0995 12 8 4.2288 -2.5262 -2.8442 13 7 2.0183 -0.6906 1.1962 14 6 2.1471 -0.0182 2.3571 15 8 1.8576 1.1613 2.4118 16 7 2.5958 -0.6538 3.4577 17 6 2.7364 0.0772 4.7195 18 6 3.2606 -0.8690 5.8014 19 6 2.2759 -2.0250 5.9886 20 6 4.6227 -1.4227 5.3785 21 6 3.4045 -0.1173 7.0996 22 1 3.1482 0.9308 7.1480 23 6 3.8635 -0.7673 8.2255 24 7 4.1752 -2.0437 8.1667 25 14 4.0426 0.1646 9.8344 26 1 3.6288 1.5772 9.6369 27 1 3.1813 -0.4629 10.8686 28 1 5.4594 0.1206 10.2769 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1370 34 1 3.9205 -2.2583 -0.1872 35 1 4.3821 0.5398 -3.8367 36 1 5.1438 -1.2839 -5.6777 37 1 4.8982 -3.6445 -4.5670 38 1 2.2490 -1.6318 1.1526 39 1 2.8265 -1.5949 3.4142 40 1 3.4381 0.9006 4.5862 41 1 1.7660 0.4720 5.0207 42 1 2.1714 -2.5689 5.0499 43 1 2.6495 -2.6994 6.7591 44 1 1.3055 -1.6306 6.2900 45 1 5.3241 -0.5992 5.2452 46 1 4.9960 -2.0972 6.1491 47 1 4.5182 -1.9666 4.4397 48 1 4.4977 -2.5012 8.9589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838753539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:54 Heat of formation + Delta-G solvation = -96.801627 kcal Electronic energy + Delta-G solvation = -28072.276163 eV Core-core repulsion = 24127.965368 eV Total energy + Delta-G solvation = -3944.310795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.50880 -41.07073 -39.04755 -38.05975 -36.20768 -34.92335 -34.03098 -33.16763 -32.25419 -31.03553 -28.77217 -27.52750 -27.41169 -26.56501 -24.80748 -22.75206 -22.50209 -21.68863 -21.37499 -20.52469 -19.49633 -18.86957 -17.75523 -17.45176 -17.21484 -16.81612 -16.60770 -16.38394 -16.08844 -15.76885 -15.28534 -15.26969 -14.67703 -14.59669 -14.22380 -14.09431 -13.92824 -13.75000 -13.46962 -13.43422 -13.14557 -13.07636 -12.81625 -12.77379 -12.66631 -12.55767 -12.51736 -12.22001 -12.12025 -11.85905 -11.44852 -11.29838 -11.23533 -11.05389 -10.84884 -10.66510 -10.38012 -10.14174 -9.53804 -9.38545 -8.00326 -6.15555 0.77221 1.42235 1.46064 1.55840 1.69318 1.94701 2.02641 2.37222 2.48070 3.23110 3.40855 3.43561 3.59472 3.86512 4.01245 4.13090 4.19555 4.27332 4.46869 4.48474 4.52478 4.58458 4.75059 4.77372 4.84970 4.89676 4.92853 5.01580 5.04025 5.10046 5.12449 5.16740 5.20404 5.24172 5.35190 5.43838 5.58929 5.69665 5.70647 5.71479 5.76884 6.16655 6.18449 6.22118 6.25663 6.46843 6.71406 6.88970 7.31363 7.52037 7.79905 8.98849 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020901 B = 0.002467 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.328882 B =11345.051137 C =12079.065993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.165 3.835 3 H 0.065 0.935 4 C -0.140 4.140 5 C 0.197 3.803 6 H 0.118 0.882 7 O -0.558 6.558 8 C -0.057 4.057 9 C -0.216 4.216 10 C -0.230 4.230 11 C -0.041 4.041 12 O -0.185 6.185 13 N -0.716 5.716 14 C 0.699 3.301 15 O -0.647 6.647 16 N -0.727 5.727 17 C 0.170 3.830 18 C 0.052 3.948 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.526 4.526 22 H 0.043 0.957 23 C 0.027 3.973 24 N -0.899 5.899 25 Si 0.945 3.055 26 H -0.276 1.276 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.388 0.612 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.235 0.765 38 H 0.406 0.594 39 H 0.404 0.596 40 H 0.030 0.970 41 H 0.032 0.968 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.014 0.986 46 H 0.062 0.938 47 H 0.036 0.964 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.577 -4.881 -27.104 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.060 3.940 3 H 0.083 0.917 4 C -0.178 4.178 5 C 0.138 3.862 6 H 0.135 0.865 7 O -0.364 6.364 8 C -0.107 4.107 9 C -0.235 4.235 10 C -0.249 4.249 11 C -0.108 4.108 12 O -0.081 6.081 13 N -0.373 5.373 14 C 0.399 3.601 15 O -0.530 6.530 16 N -0.382 5.382 17 C 0.045 3.955 18 C 0.052 3.948 19 C -0.176 4.176 20 C -0.176 4.176 21 C -0.565 4.565 22 H 0.061 0.939 23 C -0.172 4.172 24 N -0.538 5.538 25 Si 0.772 3.228 26 H -0.201 1.201 27 H -0.206 1.206 28 H -0.207 1.207 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.237 0.763 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.251 0.749 38 H 0.243 0.757 39 H 0.240 0.760 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.036 0.964 45 H 0.034 0.966 46 H 0.081 0.919 47 H 0.055 0.945 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.587 -3.605 -26.588 26.956 hybrid contribution 0.311 -0.454 0.776 0.951 sum -2.276 -4.059 -25.812 26.228 Atomic orbital electron populations 1.22160 0.94781 1.02734 1.02083 1.20730 0.94022 0.96422 0.82812 0.91674 1.22563 0.93996 1.03299 0.97935 1.20504 0.92191 0.95685 0.77854 0.86473 1.86719 1.75848 1.26799 1.47057 1.23503 1.06416 0.81373 0.99395 1.21949 1.06045 1.01751 0.93796 1.22183 1.07761 0.92514 1.02411 1.24794 1.02239 1.01782 0.81986 1.83969 1.66089 1.26486 1.31566 1.44943 1.70890 1.13846 1.07606 1.16190 0.78014 0.84647 0.81293 1.90833 1.59805 1.16723 1.85635 1.45146 1.70027 1.14171 1.08864 1.21045 0.98081 0.94244 0.82117 1.18350 0.92827 0.92419 0.91233 1.21647 0.97122 0.99080 0.99771 1.21638 0.97737 0.99337 0.98842 1.21306 1.44052 0.95980 0.95167 0.93876 1.25454 0.94977 0.95678 1.01130 1.69919 1.44983 1.09477 1.29452 0.85704 0.77571 0.78946 0.80567 1.20087 1.20646 1.20726 0.91200 0.94904 0.89734 0.88799 0.87111 0.76315 0.82466 0.81688 0.74899 0.75743 0.75998 0.95198 0.94928 0.94417 0.91918 0.96395 0.96644 0.91931 0.94471 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.48 71.98 0.68 -2.28 16 2 C 0.17 3.28 2.57 44.99 0.12 3.40 16 3 H 0.07 1.64 7.58 -2.39 -0.02 1.62 16 4 C -0.14 -1.74 4.51 30.59 0.14 -1.60 16 5 C 0.20 3.17 3.43 29.85 0.10 3.27 16 6 H 0.12 2.06 8.13 -2.39 -0.02 2.04 16 7 O -0.56 -10.65 11.24 -146.79 -1.65 -12.30 16 8 C -0.06 -0.94 6.18 24.83 0.15 -0.79 16 9 C -0.22 -3.43 10.80 22.19 0.24 -3.19 16 10 C -0.23 -3.10 10.91 22.19 0.24 -2.86 16 11 C -0.04 -0.51 12.09 66.97 0.81 0.30 16 12 O -0.18 -3.03 10.58 -0.33 0.00 -3.03 16 13 N -0.72 -17.09 3.87 -457.82 -1.77 -18.86 16 14 C 0.70 24.79 8.53 179.05 1.53 26.32 16 15 O -0.65 -28.80 16.01 -3.96 -0.06 -28.87 16 16 N -0.73 -26.23 4.96 -478.54 -2.37 -28.61 16 17 C 0.17 7.60 4.50 86.38 0.39 7.99 16 18 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 19 C -0.12 -5.35 8.08 71.98 0.58 -4.76 16 20 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 21 C -0.53 -28.53 8.01 25.60 0.21 -28.32 16 22 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 23 C 0.03 1.46 5.15 84.65 0.44 1.89 16 24 N -0.90 -48.59 9.35 21.45 0.20 -48.39 16 25 Si 0.95 43.38 29.54 68.60 2.03 45.40 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.39 4.88 8.72 -74.05 -0.65 4.24 16 35 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 36 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.23 1.00 8.06 -2.91 -0.02 0.97 16 38 H 0.41 7.29 7.55 -92.71 -0.70 6.60 16 39 H 0.40 12.58 6.18 -92.71 -0.57 12.01 16 40 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 43 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 47 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 48 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -70.64 387.23 1.60 -69.04 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -0.93 Total: 28.60 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 6.18 Total: -2.98 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -3.95 Total: -95.86 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.72 Total: -44.20 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -70.64 1.60 -69.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838753539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.766 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds