Wall clock time and date at job start Tue Mar 31 2020 13:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.57699 * 2 1 4 4 O 1.43070 * 109.52809 * 239.83963 * 2 1 3 5 5 C 1.43074 * 113.59381 * 182.14737 * 4 2 1 6 6 C 1.53139 * 109.15510 * 57.94934 * 5 4 2 7 7 O 1.43080 * 109.14964 * 304.69141 * 6 5 4 8 8 C 1.43074 * 113.59420 * 57.94714 * 7 6 5 9 9 H 1.08999 * 109.52418 * 182.14529 * 8 7 6 10 10 C 1.50700 * 109.52128 * 62.01528 * 8 7 6 11 11 O 1.21283 * 120.00111 * 350.72869 * 10 8 7 12 12 N 1.34780 * 119.99921 * 170.71861 * 10 8 7 13 13 C 1.46496 * 119.99960 * 184.69364 * 12 10 8 14 14 C 1.53583 * 112.24304 * 298.98547 * 13 12 10 15 15 C 1.54224 * 106.67667 * 238.83687 * 14 13 12 16 16 C 1.54756 * 104.15529 * 335.05072 * 15 14 13 17 17 C 1.54778 * 103.21175 * 37.81519 * 16 15 14 18 18 H 1.09007 * 111.42065 * 84.68727 * 17 16 15 19 19 N 1.46981 * 109.16577 * 209.59150 * 17 16 15 20 20 C 1.36936 * 125.57787 * 294.38307 * 19 17 16 21 21 H 1.08001 * 120.00098 * 11.46079 * 20 19 17 22 22 C 1.38810 * 119.99876 * 191.46209 * 20 19 17 23 23 N 1.31619 * 120.00102 * 11.15614 * 22 20 19 24 24 Si 1.86807 * 120.00043 * 191.15622 * 22 20 19 25 25 H 1.48497 * 109.47291 * 94.97184 * 24 22 20 26 26 H 1.48499 * 109.46952 * 214.97489 * 24 22 20 27 27 H 1.48496 * 109.47086 * 334.96927 * 24 22 20 28 28 C 1.47366 * 108.84103 * 114.35268 * 19 17 16 29 29 C 1.54913 * 112.33624 * 62.35890 * 13 12 10 30 30 H 1.08991 * 109.47606 * 293.08175 * 1 2 3 31 31 H 1.09007 * 109.47016 * 53.08334 * 1 2 3 32 32 H 1.08999 * 109.46922 * 173.08079 * 1 2 3 33 33 H 1.09006 * 109.52365 * 298.04343 * 5 4 2 34 34 H 1.09001 * 109.57971 * 177.88658 * 5 4 2 35 35 H 1.08996 * 109.52748 * 184.79156 * 6 5 4 36 36 H 1.08997 * 109.52194 * 64.58981 * 6 5 4 37 37 H 0.97004 * 120.00008 * 4.69247 * 12 10 8 38 38 H 1.09007 * 110.01331 * 358.13539 * 14 13 12 39 39 H 1.09000 * 110.01694 * 119.48068 * 14 13 12 40 40 H 1.08992 * 110.49652 * 93.72619 * 15 14 13 41 41 H 1.09005 * 110.49165 * 216.25517 * 15 14 13 42 42 H 1.09003 * 110.66886 * 156.24718 * 16 15 14 43 43 H 1.09005 * 110.67163 * 279.21873 * 16 15 14 44 44 H 0.97001 * 119.99998 * 179.97438 * 23 22 20 45 45 H 1.09004 * 110.36672 * 94.15040 * 28 19 17 46 46 H 1.09004 * 110.37316 * 216.36111 * 28 19 17 47 47 H 1.09001 * 110.96614 * 204.33712 * 29 13 12 48 48 H 1.09001 * 110.96696 * 328.09385 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 8 2.0082 -0.6775 -1.1659 5 6 3.4345 -0.7711 -1.2292 6 6 3.9463 -1.4963 0.0187 7 8 3.4681 -0.8188 1.1847 8 6 2.0418 -0.7252 1.2479 9 1 1.7525 -0.1667 2.1382 10 6 1.4484 -2.1092 1.3066 11 8 2.1536 -3.0795 1.1269 12 7 0.1341 -2.2688 1.5590 13 6 -0.4231 -3.6143 1.7181 14 6 -0.2484 -4.4691 0.4542 15 6 -1.6627 -4.8893 0.0051 16 6 -2.5040 -4.8335 1.3028 17 6 -1.9414 -3.5920 2.0360 18 1 -2.4167 -2.6748 1.6879 19 7 -2.0816 -3.7836 3.4865 20 6 -3.2662 -3.8650 4.1686 21 1 -4.1945 -3.9735 3.6275 22 6 -3.2737 -3.8082 5.5555 23 7 -2.1841 -3.4586 6.2059 24 14 -4.8304 -4.2279 6.4991 25 1 -4.7905 -5.6542 6.9106 26 1 -4.9253 -3.3671 7.7054 27 1 -6.0129 -3.9960 5.6313 28 6 -0.7386 -3.8744 4.0865 29 6 0.1887 -4.3658 2.9267 30 1 -0.3634 0.4028 0.9453 31 1 -0.3633 0.6173 -0.8217 32 1 -0.3633 -1.0202 -0.1238 33 1 3.8638 0.2300 -1.2705 34 1 3.7248 -1.3289 -2.1195 35 1 5.0363 -1.4962 0.0188 36 1 3.5811 -2.5233 0.0187 37 1 -0.4428 -1.4927 1.6354 38 1 0.2330 -3.8831 -0.3289 39 1 0.3498 -5.3517 0.6804 40 1 -2.0527 -4.1886 -0.7331 41 1 -1.6494 -5.9011 -0.4003 42 1 -3.5604 -4.6976 1.0709 43 1 -2.3547 -5.7350 1.8971 44 1 -2.1895 -3.4186 7.1750 45 1 -0.4150 -2.8961 4.4421 46 1 -0.7366 -4.5944 4.9049 47 1 0.1120 -5.4450 2.7944 48 1 1.2244 -4.0668 3.0882 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991119106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:36 Heat of formation + Delta-G solvation = -85.062905 kcal Electronic energy + Delta-G solvation = -30498.301060 eV Core-core repulsion = 26554.499295 eV Total energy + Delta-G solvation = -3943.801766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.09807 -39.53242 -37.67220 -36.15801 -34.38024 -34.04340 -32.62008 -31.36577 -29.73303 -29.08949 -27.40960 -26.73007 -25.75127 -23.86488 -23.43159 -22.41174 -20.98405 -20.05164 -19.40040 -18.82484 -17.24454 -17.11084 -16.97497 -16.67383 -16.10308 -15.46214 -15.42554 -14.95445 -14.73694 -14.43348 -13.94658 -13.68760 -13.51849 -13.27920 -12.98070 -12.76716 -12.58696 -12.34335 -12.22535 -12.14061 -11.90635 -11.77921 -11.61461 -11.25956 -11.09757 -10.93812 -10.78997 -10.68634 -10.60312 -10.52024 -10.18673 -10.11912 -9.89765 -9.80014 -9.67871 -9.63896 -8.77278 -8.61555 -8.49542 -6.83643 -5.77541 -3.11026 2.72561 3.24374 3.37919 3.43843 3.45472 3.51358 3.60370 4.29981 4.46233 4.64218 4.71856 4.84305 4.91874 5.01438 5.09496 5.14472 5.18935 5.24747 5.31031 5.36347 5.48429 5.57367 5.62995 5.68645 5.80159 5.85109 5.91038 5.96181 5.97018 6.08660 6.13928 6.29502 6.33133 6.40067 6.51785 6.56921 6.72013 6.75343 6.80446 6.84461 6.96612 7.11355 7.49177 7.58780 7.74999 7.78632 8.22569 8.44094 9.16095 9.78540 10.45996 11.35026 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.003904 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.725406 B = 7170.905161 C = 7561.319208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.067 3.933 3 H 0.078 0.922 4 O -0.371 6.371 5 C 0.027 3.973 6 C 0.000 4.000 7 O -0.353 6.353 8 C 0.038 3.962 9 H 0.134 0.866 10 C 0.504 3.496 11 O -0.527 6.527 12 N -0.701 5.701 13 C 0.160 3.840 14 C -0.110 4.110 15 C -0.124 4.124 16 C -0.130 4.130 17 C 0.163 3.837 18 H 0.045 0.955 19 N -0.592 5.592 20 C -0.229 4.229 21 H 0.076 0.924 22 C -0.004 4.004 23 N -0.915 5.915 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.176 3.824 29 C -0.145 4.145 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.401 0.599 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.253 0.747 45 H 0.026 0.974 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.194 6.234 -14.439 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.008 3.992 3 H 0.096 0.904 4 O -0.290 6.290 5 C -0.050 4.050 6 C -0.076 4.076 7 O -0.270 6.270 8 C -0.024 4.024 9 H 0.152 0.848 10 C 0.289 3.711 11 O -0.404 6.404 12 N -0.355 5.355 13 C 0.074 3.926 14 C -0.149 4.149 15 C -0.163 4.163 16 C -0.170 4.170 17 C 0.055 3.945 18 H 0.063 0.937 19 N -0.316 5.316 20 C -0.358 4.358 21 H 0.094 0.906 22 C -0.201 4.201 23 N -0.561 5.561 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.052 3.948 29 C -0.184 4.184 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.238 0.762 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.644 5.567 -14.292 17.606 hybrid contribution -0.941 0.283 0.690 1.201 sum 7.703 5.850 -13.602 16.690 Atomic orbital electron populations 1.22141 0.92004 1.04835 1.03474 1.22617 0.96289 0.95551 0.84741 0.90418 1.88124 1.20909 1.78381 1.41612 1.23249 0.81583 1.00570 0.99573 1.23694 1.00033 0.99510 0.84366 1.88155 1.17619 1.77630 1.43572 1.22925 0.83623 0.94737 1.01075 0.84809 1.20920 0.82537 0.91183 0.76444 1.90560 1.59663 1.41175 1.48967 1.46327 1.08492 1.09314 1.71349 1.21653 0.94194 0.81456 0.95275 1.22263 0.96751 0.99389 0.96481 1.22358 0.95542 1.00408 0.97956 1.22931 0.98471 1.00382 0.95252 1.21755 0.90150 0.95598 0.87048 0.93701 1.44446 1.02529 1.84601 1.00046 1.18986 0.84739 1.43324 0.88712 0.90624 1.24824 0.97360 1.01320 0.96615 1.69975 1.27048 1.52073 1.07005 0.86162 0.82447 0.77918 0.79595 1.21630 1.21845 1.20576 1.21645 0.82226 0.98735 0.92234 1.23578 0.99484 0.99056 0.96300 0.90052 0.90709 0.89910 0.92643 0.87909 0.88234 0.87809 0.76205 0.92044 0.91361 0.92338 0.92299 0.92333 0.90879 0.93708 0.95573 0.91734 0.91377 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 7.99 37.16 0.30 -1.30 16 2 C 0.07 0.72 3.15 -26.66 -0.08 0.64 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 4 O -0.37 -4.63 10.23 -48.80 -0.50 -5.13 16 5 C 0.03 0.28 7.05 37.23 0.26 0.54 16 6 C 0.00 0.00 6.60 37.23 0.25 0.25 16 7 O -0.35 -4.95 10.54 -62.44 -0.66 -5.60 16 8 C 0.04 0.49 3.39 -27.81 -0.09 0.40 16 9 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 10 C 0.50 7.88 5.56 -10.98 -0.06 7.82 16 11 O -0.53 -9.60 11.57 -14.13 -0.16 -9.76 16 12 N -0.70 -10.85 3.95 -45.36 -0.18 -11.03 16 13 C 0.16 2.82 0.73 -129.38 -0.09 2.73 16 14 C -0.11 -1.78 5.21 -25.79 -0.13 -1.91 16 15 C -0.12 -1.84 6.84 -25.17 -0.17 -2.01 16 16 C -0.13 -2.29 6.25 -24.87 -0.16 -2.45 16 17 C 0.16 3.17 3.63 -65.60 -0.24 2.93 16 18 H 0.05 0.86 7.99 -51.92 -0.41 0.45 16 19 N -0.59 -14.25 3.06 -160.14 -0.49 -14.74 16 20 C -0.23 -6.10 9.97 -15.06 -0.15 -6.25 16 21 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 22 C 0.00 -0.11 5.37 -17.43 -0.09 -0.20 16 23 N -0.91 -26.28 10.80 55.49 0.60 -25.68 16 24 Si 0.91 21.60 29.57 -169.99 -5.03 16.58 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.18 4.22 5.45 -1.73 -0.01 4.22 16 29 C -0.14 -2.90 5.87 -23.88 -0.14 -3.04 16 30 H 0.08 0.65 7.64 -51.93 -0.40 0.25 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.93 5.95 -51.93 -0.31 0.62 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.52 5.31 -51.93 -0.28 1.25 16 37 H 0.40 5.53 5.86 -40.82 -0.24 5.29 16 38 H 0.06 1.00 7.40 -51.92 -0.38 0.62 16 39 H 0.07 1.14 7.37 -51.93 -0.38 0.76 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.03 0.68 8.05 -51.93 -0.42 0.26 16 46 H 0.06 1.74 7.04 -51.93 -0.37 1.37 16 47 H 0.07 1.35 7.63 -51.93 -0.40 0.96 16 48 H 0.07 1.38 6.80 -51.93 -0.35 1.02 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -31.39 358.66 -9.34 -40.73 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.71 Total: 6.89 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.62 Total: 2.35 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.07 Total: -51.45 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.32 Total: -20.50 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.39 -9.34 -40.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991119106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.335 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds